IGKV2OR22-4 (immunoglobulin kappa variable 2/OR22-4 (pseudogene)) - Rat Genome Database

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Gene: IGKV2OR22-4 (immunoglobulin kappa variable 2/OR22-4 (pseudogene)) Homo sapiens
Analyze
Symbol: IGKV2OR22-4
Name: immunoglobulin kappa variable 2/OR22-4 (pseudogene)
RGD ID: 1351147
HGNC Page HGNC:5813
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: INFERRED
Previously known as: IGKV2OR224; IGKVP6
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382216,914,064 - 16,915,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2216,914,235 - 16,914,981 (-)EnsemblGRCh38hg38GRCh38
GRCh372217,394,954 - 17,396,067 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera221,017,223 - 1,018,336 (-)NCBICelera
Cytogenetic Map22q11.1NCBI
HuRef221,214,384 - 1,215,497 (-)NCBIHuRef
CHM1_12217,399,994 - 17,401,107 (-)NCBICHM1_1
T2T-CHM13v2.02217,590,724 - 17,591,837 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:2853099   PMID:12477932  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:249
Interacting mature miRNAs:258
Transcripts:ENST00000523309
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH77903  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map22q11UniSTS
Cytogenetic Map22q11.1UniSTS
HuRef221,214,506 - 1,214,625UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 4 3 29 1 1 10 2
Low 294 48 65 109 361 4 34 3 25 24 160 172 107 17 21
Below cutoff 467 354 176 85 388 54 365 91 346 64 309 312 31 102 251

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000523309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2216,914,235 - 16,914,981 (-)Ensembl
Protein Sequences
GenBank Protein AAA36093 (Get FASTA)   NCBI Sequence Viewer  
  AAI44531 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC IGKV2OR22-4 COSMIC
Ensembl Genes ENSG00000253691 Ensembl
GTEx ENSG00000253691 GTEx
HGNC ID HGNC:5813 ENTREZGENE
Human Proteome Map IGKV2OR22-4 Human Proteome Map
NCBI Gene 28847 ENTREZGENE
PharmGKB PA35390 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGKV2OR22-4  immunoglobulin kappa variable 2/OR22-4 (pseudogene)  IGKV2OR22-4  immunoglobulin kappa variable 2/OR22-4 pseudogene  Symbol and/or name change 5135510 APPROVED