IGLVI-42 (immunoglobulin lambda variable (I)-42 (pseudogene)) - Rat Genome Database

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Pathways
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Gene: IGLVI-42 (immunoglobulin lambda variable (I)-42 (pseudogene)) Homo sapiens
Analyze
Symbol: IGLVI-42
Name: immunoglobulin lambda variable (I)-42 (pseudogene)
RGD ID: 1350879
HGNC Page HGNC:5936
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: IGLV(I)-42; IGLVI42; V1-15P
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,397,032 - 22,397,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,397,032 - 22,397,524 (+)EnsemblGRCh38hg38GRCh38
GRCh372222,751,369 - 22,751,827 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,081,537 - 21,081,827 (+)NCBINCBI36Build 36hg18NCBI36
Celera226,559,290 - 6,559,748 (+)NCBICelera
Cytogenetic Map22q11.22NCBI
HuRef225,709,821 - 5,710,279 (+)NCBIHuRef
CHM1_12222,751,502 - 22,751,960 (+)NCBICHM1_1
T2T-CHM13v2.02222,810,744 - 22,811,202 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1909789   PMID:2499871   PMID:9074928  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:226
Count of miRNA genes:220
Interacting mature miRNAs:226
Transcripts:ENST00000522485
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 12 4 82 5
Below cutoff 132 63 31 31 145 2 39 10 190 2 214 60 29 19 25 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000522485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,397,032 - 22,397,524 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGLVI-42 COSMIC
Ensembl Genes ENSG00000254175 Ensembl, ENTREZGENE
GTEx ENSG00000254175 GTEx
HGNC ID HGNC:5936 ENTREZGENE
Human Proteome Map IGLVI-42 Human Proteome Map
NCBI Gene 28767 ENTREZGENE
PharmGKB PA35479 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGLVI-42  immunoglobulin lambda variable (I)-42 (pseudogene)  IGLVI-42  immunoglobulin lambda variable (I)-42 pseudogene  Symbol and/or name change 5135510 APPROVED