CCDC13 (coiled-coil domain containing 13) - Rat Genome Database

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Gene: CCDC13 (coiled-coil domain containing 13) Homo sapiens
Analyze
Symbol: CCDC13
Name: coiled-coil domain containing 13
RGD ID: 1350707
HGNC Page HGNC:26358
Description: Acts upstream of or within DNA damage response; cytoplasmic microtubule organization; and non-motile cilium assembly. Located in centriolar satellite; cytosol; and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 13; FLJ25467
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,704,118 - 42,773,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,705,756 - 42,773,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37342,747,248 - 42,814,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,724,878 - 42,789,749 (-)NCBINCBI36Build 36hg18NCBI36
Build 34342,724,885 - 42,789,748NCBI
Celera342,690,269 - 42,755,122 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,795,514 - 42,860,384 (-)NCBIHuRef
CHM1_1342,701,048 - 42,765,907 (-)NCBICHM1_1
T2T-CHM13v2.0342,722,128 - 42,791,300 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:15489334   PMID:20379614   PMID:21873635   PMID:23251661   PMID:24024966   PMID:24816561   PMID:25187353   PMID:30021884   PMID:32296183   PMID:32393512   PMID:35914814  


Genomics

Comparative Map Data
CCDC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,704,118 - 42,773,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,705,756 - 42,773,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37342,747,248 - 42,814,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,724,878 - 42,789,749 (-)NCBINCBI36Build 36hg18NCBI36
Build 34342,724,885 - 42,789,748NCBI
Celera342,690,269 - 42,755,122 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,795,514 - 42,860,384 (-)NCBIHuRef
CHM1_1342,701,048 - 42,765,907 (-)NCBICHM1_1
T2T-CHM13v2.0342,722,128 - 42,791,300 (-)NCBIT2T-CHM13v2.0
Ccdc13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,626,690 - 121,668,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,626,693 - 121,668,527 (-)EnsemblGRCm39 Ensembl
GRCm389121,797,624 - 121,839,515 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,797,627 - 121,839,461 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,706,745 - 121,725,836 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,726,480 - 121,745,639 (-)NCBIMGSCv36mm8
Celera9122,271,004 - 122,290,099 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.63NCBI
Ccdc13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,335,797 - 130,391,658 (-)NCBIGRCr8
mRatBN7.28121,455,202 - 121,507,487 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,457,697 - 121,502,337 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08130,436,529 - 130,475,521 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,437,157 - 130,475,320 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,615,611 - 129,653,317 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,098,740 - 127,139,377 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8120,592,355 - 120,623,289 (-)NCBICelera
Cytogenetic Map8q32NCBI
Ccdc13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,061,449 - 28,107,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,061,460 - 28,107,509 (+)NCBIChiLan1.0ChiLan1.0
CCDC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,669,492 - 42,737,174 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,662,044 - 42,741,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,615,424 - 42,680,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1343,679,176 - 43,743,253 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,679,176 - 43,743,463 (-)Ensemblpanpan1.1panPan2
CCDC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,835,075 - 11,886,892 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,820,749 - 11,873,713 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,809,264 - 11,861,401 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,124,443 - 12,176,597 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,107,392 - 12,163,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12311,926,382 - 11,978,871 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,068,522 - 12,121,181 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,072,658 - 12,124,832 (-)NCBIUU_Cfam_GSD_1.0
Ccdc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,998,819 - 200,055,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,350,640 - 2,402,557 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,350,668 - 2,404,882 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,224,333 - 26,265,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,220,622 - 26,265,699 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,888,378 - 28,933,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,164,828 - 4,228,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,165,416 - 4,228,483 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041162,971,825 - 163,037,800 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473076,963,296 - 76,998,464 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC13
33 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh37/hg19 3p22.2-21.31(chr3:37028313-49929220)x3 copy number gain See cases [RCV000240519] Chr3:37028313..49929220 [GRCh37]
Chr3:3p22.2-21.31		 likely pathogenic
GRCh37/hg19 3p22.1-21.31(chr3:41104508-44636698)x1 copy number loss See cases [RCV000240302] Chr3:41104508..44636698 [GRCh37]
Chr3:3p22.1-21.31		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p24.3-21.31(chr3:16923595-45249923)x2,3 copy number gain not provided [RCV000682249] Chr3:16923595..45249923 [GRCh37]
Chr3:3p24.3-21.31		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_144719.4(CCDC13):c.1910G>T (p.Gly637Val) single nucleotide variant not specified [RCV004293915] Chr3:42709762 [GRCh38]
Chr3:42751254 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.10G>A (p.Asp4Asn) single nucleotide variant not specified [RCV004308570] Chr3:42758336 [GRCh38]
Chr3:42799828 [GRCh37]
Chr3:3p22.1		 uncertain significance
NC_000003.11:g.(?_40924962)_(43760024_?)dup duplication Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 8 [RCV001979130] Chr3:40924962..43760024 [GRCh37]
Chr3:3p22.1-21.33		 uncertain significance
NM_144719.4(CCDC13):c.1003C>T (p.Arg335Trp) single nucleotide variant not specified [RCV004305429] Chr3:42739795 [GRCh38]
Chr3:42781287 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.118C>T (p.Leu40Phe) single nucleotide variant not specified [RCV004301157] Chr3:42758228 [GRCh38]
Chr3:42799720 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.559G>A (p.Ala187Thr) single nucleotide variant not specified [RCV004083967] Chr3:42751980 [GRCh38]
Chr3:42793472 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.232G>A (p.Asp78Asn) single nucleotide variant not specified [RCV004079270] Chr3:42757204 [GRCh38]
Chr3:42798696 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1159C>G (p.Leu387Val) single nucleotide variant not specified [RCV004172745] Chr3:42739639 [GRCh38]
Chr3:42781131 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.83A>C (p.Lys28Thr) single nucleotide variant not specified [RCV004123882] Chr3:42758263 [GRCh38]
Chr3:42799755 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.968A>G (p.Glu323Gly) single nucleotide variant not specified [RCV004210837] Chr3:42742915 [GRCh38]
Chr3:42784407 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.2093A>G (p.Gln698Arg) single nucleotide variant not specified [RCV004202999] Chr3:42709035 [GRCh38]
Chr3:42750527 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.433C>T (p.Arg145Trp) single nucleotide variant not specified [RCV004161955] Chr3:42752655 [GRCh38]
Chr3:42794147 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.134A>T (p.Asp45Val) single nucleotide variant not specified [RCV004079779] Chr3:42758212 [GRCh38]
Chr3:42799704 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1717C>T (p.Arg573Trp) single nucleotide variant not specified [RCV004074231] Chr3:42730468 [GRCh38]
Chr3:42771960 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1693G>A (p.Glu565Lys) single nucleotide variant not specified [RCV004107816] Chr3:42730492 [GRCh38]
Chr3:42771984 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.379G>A (p.Gly127Ser) single nucleotide variant not specified [RCV004231728] Chr3:42752709 [GRCh38]
Chr3:42794201 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1556C>T (p.Thr519Met) single nucleotide variant not specified [RCV004120415] Chr3:42732926 [GRCh38]
Chr3:42774418 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.491G>A (p.Arg164His) single nucleotide variant not specified [RCV004203685] Chr3:42752597 [GRCh38]
Chr3:42794089 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1405A>G (p.Ser469Gly) single nucleotide variant not specified [RCV004179026] Chr3:42733576 [GRCh38]
Chr3:42775068 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.698A>G (p.Gln233Arg) single nucleotide variant not specified [RCV004082293] Chr3:42747279 [GRCh38]
Chr3:42788771 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1409G>T (p.Gly470Val) single nucleotide variant not specified [RCV004206501] Chr3:42733572 [GRCh38]
Chr3:42775064 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.8C>T (p.Ala3Val) single nucleotide variant not specified [RCV004187021] Chr3:42758338 [GRCh38]
Chr3:42799830 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.382G>A (p.Val128Ile) single nucleotide variant not specified [RCV004195527] Chr3:42752706 [GRCh38]
Chr3:42794198 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1801C>A (p.His601Asn) single nucleotide variant not specified [RCV004256974] Chr3:42713234 [GRCh38]
Chr3:42754726 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1069A>C (p.Lys357Gln) single nucleotide variant not specified [RCV004250578] Chr3:42739729 [GRCh38]
Chr3:42781221 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.58G>A (p.Glu20Lys) single nucleotide variant not specified [RCV004261224] Chr3:42758288 [GRCh38]
Chr3:42799780 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1378C>T (p.Arg460Trp) single nucleotide variant not specified [RCV004297435] Chr3:42733603 [GRCh38]
Chr3:42775095 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1846C>G (p.Gln616Glu) single nucleotide variant not specified [RCV004264513] Chr3:42713189 [GRCh38]
Chr3:42754681 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1685G>A (p.Arg562Gln) single nucleotide variant not specified [RCV004297708] Chr3:42730500 [GRCh38]
Chr3:42771992 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.2068C>T (p.Arg690Trp) single nucleotide variant not specified [RCV004342967] Chr3:42709060 [GRCh38]
Chr3:42750552 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1412G>A (p.Arg471His) single nucleotide variant not specified [RCV004340603] Chr3:42733569 [GRCh38]
Chr3:42775061 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.164A>G (p.Asp55Gly) single nucleotide variant not provided [RCV003437783] Chr3:42758182 [GRCh38]
Chr3:42799674 [GRCh37]
Chr3:3p22.1		 benign
NM_144719.4(CCDC13):c.1433C>T (p.Thr478Ile) single nucleotide variant not specified [RCV004432710] Chr3:42733548 [GRCh38]
Chr3:42775040 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1684C>T (p.Arg562Trp) single nucleotide variant not specified [RCV004432714] Chr3:42730501 [GRCh38]
Chr3:42771993 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.311G>C (p.Arg104Thr) single nucleotide variant not specified [RCV004432717] Chr3:42757125 [GRCh38]
Chr3:42798617 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.434G>A (p.Arg145Gln) single nucleotide variant not specified [RCV004432719] Chr3:42752654 [GRCh38]
Chr3:42794146 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1273C>T (p.Arg425Trp) single nucleotide variant not specified [RCV004432708] Chr3:42735805 [GRCh38]
Chr3:42777297 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1412G>T (p.Arg471Leu) single nucleotide variant not specified [RCV004432709] Chr3:42733569 [GRCh38]
Chr3:42775061 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1601C>T (p.Ser534Leu) single nucleotide variant not specified [RCV004432713] Chr3:42730584 [GRCh38]
Chr3:42772076 [GRCh37]
Chr3:3p22.1		 likely benign
NM_144719.4(CCDC13):c.1531C>T (p.His511Tyr) single nucleotide variant not specified [RCV004432711] Chr3:42732951 [GRCh38]
Chr3:42774443 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1726G>A (p.Glu576Lys) single nucleotide variant not specified [RCV004432715] Chr3:42713309 [GRCh38]
Chr3:42754801 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1909G>A (p.Gly637Arg) single nucleotide variant not specified [RCV004432716] Chr3:42709763 [GRCh38]
Chr3:42751255 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.394G>T (p.Val132Leu) single nucleotide variant not specified [RCV004432718] Chr3:42752694 [GRCh38]
Chr3:42794186 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.1058G>A (p.Arg353Lys) single nucleotide variant not specified [RCV004432707] Chr3:42739740 [GRCh38]
Chr3:42781232 [GRCh37]
Chr3:3p22.1		 likely benign
NM_144719.4(CCDC13):c.1561C>T (p.Pro521Ser) single nucleotide variant not specified [RCV004432712] Chr3:42732921 [GRCh38]
Chr3:42774413 [GRCh37]
Chr3:3p22.1		 uncertain significance
NM_144719.4(CCDC13):c.490C>T (p.Arg164Cys) single nucleotide variant not specified [RCV004432720] Chr3:42752598 [GRCh38]
Chr3:42794090 [GRCh37]
Chr3:3p22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2266
Count of miRNA genes:971
Interacting mature miRNAs:1197
Transcripts:ENST00000310232, ENST00000435327, ENST00000466031, ENST00000472921, ENST00000479576, ENST00000479631, ENST00000482100, ENST00000492806, ENST00000496027
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D3S2304  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37342,815,349 - 42,815,461UniSTSGRCh37
Build 36342,790,353 - 42,790,465RGDNCBI36
Celera342,755,724 - 42,755,836RGD
Cytogenetic Map3p22.1UniSTS
HuRef342,860,986 - 42,861,102UniSTS
Marshfield Genetic Map367.94UniSTS
Marshfield Genetic Map367.94RGD
deCODE Assembly Map367.22UniSTS
D3S4039  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37342,767,320 - 42,767,455UniSTSGRCh37
Build 36342,742,324 - 42,742,459RGDNCBI36
Celera342,707,711 - 42,707,846RGD
Cytogenetic Map3p22.1UniSTS
HuRef342,812,945 - 42,813,080UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 3 3 3 1 16 1 288 18 1
Low 1957 2035 1245 216 924 164 2313 1153 3520 272 824 1336 56 1 918 1614 3 1
Below cutoff 465 944 458 385 821 279 2031 1031 196 137 335 238 117 285 1173 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_144719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005264898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005264899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_940385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK058196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM664398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000310232   ⟹   ENSP00000309836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,705,756 - 42,773,253 (-)Ensembl
RefSeq Acc Id: ENST00000435327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,749,815 - 42,773,243 (-)Ensembl
RefSeq Acc Id: ENST00000466031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,709,698 - 42,714,149 (-)Ensembl
RefSeq Acc Id: ENST00000472921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,713,162 - 42,733,544 (-)Ensembl
RefSeq Acc Id: ENST00000479576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,745,735 - 42,757,120 (-)Ensembl
RefSeq Acc Id: ENST00000482100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,717,968 - 42,719,525 (-)Ensembl
RefSeq Acc Id: ENST00000492806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,746,794 - 42,773,253 (-)Ensembl
RefSeq Acc Id: NM_144719   ⟹   NP_653320
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,705,756 - 42,773,253 (-)NCBI
GRCh37342,749,764 - 42,814,745 (-)NCBI
Build 36342,724,878 - 42,789,749 (-)NCBI Archive
Celera342,690,269 - 42,755,122 (-)RGD
HuRef342,795,514 - 42,860,384 (-)ENTREZGENE
CHM1_1342,701,048 - 42,765,907 (-)NCBI
T2T-CHM13v2.0342,723,770 - 42,791,300 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005264898   ⟹   XP_005264955
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,705,756 - 42,773,253 (-)NCBI
GRCh37342,749,764 - 42,814,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005264899   ⟹   XP_005264956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,733,535 - 42,773,253 (-)NCBI
GRCh37342,749,764 - 42,814,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011533418   ⟹   XP_011531720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,705,756 - 42,773,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011533419   ⟹   XP_011531721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,705,756 - 42,750,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011533420   ⟹   XP_011531722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,733,665 - 42,773,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011533421   ⟹   XP_011531723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,734,905 - 42,773,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017005781   ⟹   XP_016861270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,705,756 - 42,751,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054345388   ⟹   XP_054201363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,723,770 - 42,791,300 (-)NCBI
RefSeq Acc Id: XM_054345389   ⟹   XP_054201364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,723,770 - 42,791,300 (-)NCBI
RefSeq Acc Id: XM_054345390   ⟹   XP_054201365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,723,770 - 42,768,550 (-)NCBI
RefSeq Acc Id: XM_054345391   ⟹   XP_054201366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,723,770 - 42,769,979 (-)NCBI
RefSeq Acc Id: XM_054345392   ⟹   XP_054201367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,751,689 - 42,791,300 (-)NCBI
RefSeq Acc Id: XM_054345393   ⟹   XP_054201368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,752,386 - 42,791,300 (-)NCBI
RefSeq Acc Id: XM_054345394   ⟹   XP_054201369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,751,559 - 42,791,300 (-)NCBI
RefSeq Acc Id: XR_008486665
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0342,722,128 - 42,791,300 (-)NCBI
RefSeq Acc Id: XR_940385
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,704,118 - 42,773,253 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_653320   ⟸   NM_144719
- UniProtKB: Q8IYE1 (UniProtKB/Swiss-Prot),   A0A3B3IRZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005264955   ⟸   XM_005264898
- Peptide Label: isoform X1
- UniProtKB: A0A3B3IRZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005264956   ⟸   XM_005264899
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011531720   ⟸   XM_011533418
- Peptide Label: isoform X2
- UniProtKB: A0A3B3IRZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011531721   ⟸   XM_011533419
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011531722   ⟸   XM_011533420
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011531723   ⟸   XM_011533421
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016861270   ⟸   XM_017005781
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000309836   ⟸   ENST00000310232
RefSeq Acc Id: XP_054201364   ⟸   XM_054345389
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054201363   ⟸   XM_054345388
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054201366   ⟸   XM_054345391
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054201365   ⟸   XM_054345390
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054201369   ⟸   XM_054345394
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054201367   ⟸   XM_054345392
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054201368   ⟸   XM_054345393
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IYE1-F1-model_v2 AlphaFold Q8IYE1 1-715 view protein structure

Promoters
RGD ID:6864074
Promoter ID:EPDNEW_H5202
Type:initiation region
Name:CCDC13_1
Description:coiled-coil domain containing 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38342,773,253 - 42,773,313EPDNEW
RGD ID:6800720
Promoter ID:HG_KWN:44609
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000256652,   OTTHUMT00000343641,   OTTHUMT00000343642
Position:
Human AssemblyChrPosition (strand)Source
Build 36342,789,419 - 42,789,919 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26358 AgrOrtholog
COSMIC CCDC13 COSMIC
Ensembl Genes ENSG00000244607 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000280571 UniProtKB/TrEMBL
Ensembl Transcript ENST00000310232 ENTREZGENE
  ENST00000310232.11 UniProtKB/Swiss-Prot
  ENST00000648550.1 UniProtKB/TrEMBL
Gene3D-CATH Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
GTEx ENSG00000244607 GTEx
  ENSG00000280571 GTEx
HGNC ID HGNC:26358 ENTREZGENE
Human Proteome Map CCDC13 Human Proteome Map
InterPro CCDC13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:152206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 152206 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31935 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134974073 PharmGKB
UniProt A0A3B3IRZ5 ENTREZGENE, UniProtKB/TrEMBL
  CCD13_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q96LI1_HUMAN UniProtKB/TrEMBL