RPL13AP7 (ribosomal protein L13a pseudogene 7) - Rat Genome Database

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Gene: RPL13AP7 (ribosomal protein L13a pseudogene 7) Homo sapiens
Analyze
Symbol: RPL13AP7
Name: ribosomal protein L13a pseudogene 7
RGD ID: 1350057
HGNC Page HGNC:23755
Description: INTERACTS WITH chloropicrin; methylparaben; temozolomide
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL13A_12_1722
Related Functional Gene: RPL13A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382125,361,800 - 25,362,920 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2125,361,821 - 25,362,431 (+)EnsemblGRCh38hg38GRCh38
GRCh372126,734,114 - 26,735,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362125,655,977 - 25,657,120 (+)NCBINCBI36Build 36hg18NCBI36
Celera2111,917,769 - 11,918,906 (+)NCBICelera
Cytogenetic Map21q21.2NCBI
HuRef2112,137,622 - 12,138,753 (+)NCBIHuRef
CHM1_12126,294,647 - 26,295,778 (+)NCBICHM1_1
T2T-CHM13v2.02123,719,659 - 23,720,781 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:358
Count of miRNA genes:335
Interacting mature miRNAs:358
Transcripts:ENST00000425147
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH38886  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371949,995,366 - 49,995,502UniSTSGRCh37
GRCh372126,735,038 - 26,735,174UniSTSGRCh37
Build 361954,687,178 - 54,687,314RGDNCBI36
Celera1946,864,688 - 46,864,824RGD
Celera2111,918,695 - 11,918,831UniSTS
Cytogenetic Map21q21.2UniSTS
Cytogenetic Map19q13.3UniSTS
HuRef1946,372,904 - 46,373,040UniSTS
HuRef2112,138,553 - 12,138,689UniSTS
D21S1422  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372126,739,959 - 26,740,059UniSTSGRCh37
Build 362125,661,830 - 25,661,930RGDNCBI36
Celera2111,923,616 - 11,923,716RGD
Cytogenetic Map21q21.2UniSTS
HuRef2112,143,475 - 12,143,575UniSTS
TNG Radiation Hybrid Map215671.0UniSTS
Stanford-G3 RH Map21396.0UniSTS
NCBI RH Map21144.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 8 8 3 37 1 7
Low 2319 2595 1560 479 1736 320 4177 1968 2819 335 1334 1481 167 1190 2706 2
Below cutoff 94 380 146 127 189 128 149 218 868 76 66 111 4 14 71 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000425147
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2125,361,821 - 25,362,431 (+)Ensembl
RefSeq Acc Id: ENST00000672784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2125,362,085 - 25,381,756 (+)Ensembl
RefSeq Acc Id: XR_016232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 362125,655,977 - 25,657,120 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPL13AP7 COSMIC
Ensembl Genes ENSG00000213885 Ensembl
GTEx ENSG00000213885 GTEx
HGNC ID HGNC:23755 ENTREZGENE
Human Proteome Map RPL13AP7 Human Proteome Map
NCBI Gene 284821 ENTREZGENE
PharmGKB PA134920027 PharmGKB