CSF2RBP1 (CSF2RB pseudogene 1) - Rat Genome Database

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Gene: CSF2RBP1 (CSF2RB pseudogene 1) Homo sapiens
Analyze
Symbol: CSF2RBP1
Name: CSF2RB pseudogene 1
RGD ID: 1349987
HGNC Page HGNC:2437
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: colony stimulating factor 2 receptor beta common subunit pseudogene 1; CSF2RB2; fF45C1.2
Related Functional Gene: CSF2RB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,950,530 - 36,953,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,950,529 - 36,953,723 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,346,572 - 37,349,765 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,676,417 - 35,679,810 (-)NCBINCBI36Build 36hg18NCBI36
Celera2221,147,893 - 21,151,087 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,310,556 - 20,313,781 (-)NCBIHuRef
CHM1_12237,306,102 - 37,309,296 (-)NCBICHM1_1
T2T-CHM13v2.02237,409,471 - 37,412,665 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9361008   PMID:10591208  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:285
Interacting mature miRNAs:308
Transcripts:ENST00000447905
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 10 10 1
Low 16 391 1 2 529 1 18 4 6 2 44 65 1 14 2 1
Below cutoff 218 459 124 61 456 48 617 157 192 29 385 311 13 161 304 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447905
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,950,529 - 36,953,723 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CSF2RBP1 COSMIC
Ensembl Genes ENSG00000232254 Ensembl, ENTREZGENE
GTEx ENSG00000232254 GTEx
HGNC ID HGNC:2437 ENTREZGENE
Human Proteome Map CSF2RBP1 Human Proteome Map
NCBI Gene 23772 ENTREZGENE
PharmGKB PA26940 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-03 CSF2RBP1  CSF2RB pseudogene 1  CSF2RBP1  colony stimulating factor 2 receptor beta common subunit pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-01-19 CSF2RBP1  colony stimulating factor 2 receptor beta common subunit pseudogene 1    colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 CSF2RBP1  colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) pseudogene 1  CSF2RB2  colony stimulating factor 2 receptor, beta, 2 pseudogene  Symbol and/or name change 5135510 APPROVED