FXYD6P1 (FXYD domain containing ion transport regulator 6 pseudogene 1) - Rat Genome Database

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Gene: FXYD6P1 (FXYD domain containing ion transport regulator 6 pseudogene 1) Homo sapiens
Analyze
Symbol: FXYD6P1
Name: FXYD domain containing ion transport regulator 6 pseudogene 1
RGD ID: 1349556
HGNC Page HGNC:4031
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: FXYD6  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381042,555,366 - 42,555,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1042,555,440 - 42,555,724 (+)EnsemblGRCh38hg38GRCh38
GRCh371043,050,814 - 43,051,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361042,370,894 - 42,371,181 (+)NCBINCBI36Build 36hg18NCBI36
Celera1039,054,336 - 39,054,623 (+)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1039,577,752 - 39,578,039 (+)NCBIHuRef
CHM1_11043,090,382 - 43,090,669 (+)NCBICHM1_1
T2T-CHM13v2.01043,432,913 - 43,433,472 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:171
Interacting mature miRNAs:175
Transcripts:ENST00000604857
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 1 3 1 20 1 4 4 3 39 10 2
Below cutoff 56 42 90 32 64 21 170 61 221 56 203 98 11 24 113 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000604857
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1042,555,440 - 42,555,724 (+)Ensembl
RefSeq Acc Id: XM_001724154
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361042,370,894 - 42,371,181 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC FXYD6P1 COSMIC
Ensembl Genes ENSG00000270762 Ensembl
GTEx ENSG00000270762 GTEx
HGNC ID HGNC:4031 ENTREZGENE
Human Proteome Map FXYD6P1 Human Proteome Map
NCBI Gene 100128934 ENTREZGENE
PharmGKB PA28447 PharmGKB
UniProt L8E6T7_HUMAN UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-13 FXYD6P1  FXYD domain containing ion transport regulator 6 pseudogene 1  FXYD6P1  FXYD domain containing ion transport regulator 6, pseudogene 1  Symbol and/or name change 5135510 APPROVED