NLRP11 (NLR family pyrin domain containing 11) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NLRP11 (NLR family pyrin domain containing 11) Homo sapiens
Analyze
Symbol: NLRP11
Name: NLR family pyrin domain containing 11
RGD ID: 1349443
HGNC Page HGNC:22945
Description: Enables RNA binding activity. Predicted to be involved in regulation of inflammatory response. Predicted to be active in cytoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CLR19.6; FLJ26273; NACHT, leucine rich repeat and PYD containing 11; NACHT, LRR and PYD containing protein 11; NACHT, LRR and PYD domains-containing protein 11; NALP11; NLR family, pyrin domain containing 11; NOD17; nucleotide-binding oligomerization domain protein 17; nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 11; PAAD- and NACHT-containing protein 10; PAAD- and NACHT-containing protein 10B; PAAD-and NACHT domain-containing protein 10; PAN10; PYPAF6; PYPAF7; PYRIN-containing APAF1-like protein 6
RGD Orthologs
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,785,399 - 55,836,575 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,785,397 - 55,836,800 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,296,765 - 56,347,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,988,577 - 61,035,172 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,988,576 - 61,035,166NCBI
Celera1953,341,920 - 53,393,276 (-)NCBICelera
Cytogenetic Map19q13.42-q13.43NCBI
HuRef1952,608,953 - 52,660,294 (-)NCBIHuRef
CHM1_11956,290,334 - 56,341,701 (-)NCBICHM1_1
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12019269   PMID:12387869   PMID:12477932   PMID:12563287   PMID:12615073   PMID:14702039   PMID:15489334   PMID:19010793   PMID:19074885   PMID:20403135   PMID:21873635   PMID:22267201  
PMID:22658674   PMID:23307926   PMID:23377640   PMID:29097393   PMID:29301940   PMID:30021884   PMID:32832566   PMID:34349018   PMID:36243803   PMID:37478192  


Genomics

Comparative Map Data
NLRP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,785,399 - 55,836,575 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,785,397 - 55,836,800 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,296,765 - 56,347,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,988,577 - 61,035,172 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,988,576 - 61,035,166NCBI
Celera1953,341,920 - 53,393,276 (-)NCBICelera
Cytogenetic Map19q13.42-q13.43NCBI
HuRef1952,608,953 - 52,660,294 (-)NCBIHuRef
CHM1_11956,290,334 - 56,341,701 (-)NCBICHM1_1
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBIT2T-CHM13v2.0
NLRP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22062,074,999 - 62,108,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,865,198 - 63,899,031 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,824,237 - 52,858,706 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,612,641 - 61,657,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,612,641 - 61,653,252 (-)Ensemblpanpan1.1panPan2
NLRP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl660,173,139 - 60,217,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1660,145,050 - 60,222,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2655,262,509 - 55,342,266 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NLRP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,381,009 - 48,428,934 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,381,227 - 48,415,552 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660451,051,930 - 1,097,425 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in NLRP11
69 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh37/hg19 19q13.42-13.43(chr19:56212463-57191708)x3 copy number gain See cases [RCV000510179] Chr19:56212463..57191708 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3 copy number gain See cases [RCV000050883] Chr19:50191219..58535818 [GRCh38]
Chr19:50694476..59047185 [GRCh37]
Chr19:55386288..63738997 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3 copy number gain See cases [RCV000052926] Chr19:51141518..58539965 [GRCh38]
Chr19:51644775..59051332 [GRCh37]
Chr19:56336587..63743144 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
NM_145007.3(NLRP11):c.1993C>T (p.Arg665Cys) single nucleotide variant Malignant melanoma [RCV000063641] Chr19:55807863 [GRCh38]
Chr19:56319229 [GRCh37]
Chr19:61011041 [NCBI36]
Chr19:19q13.43
not provided
NM_134444.5(NLRP4):c.-458G>A single nucleotide variant not provided [RCV000089242] Chr19:55836542 [GRCh38]
Chr19:56347908 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.*85A>G single nucleotide variant not provided [RCV000089524] Chr19:55785540 [GRCh38]
Chr19:56296906 [GRCh37]
Chr19:19q13.42
not provided
NM_145007.3(NLRP11):c.1091A>G (p.Gln364Arg) single nucleotide variant Malignant melanoma [RCV000072373] Chr19:55809519 [GRCh38]
Chr19:56320885 [GRCh37]
Chr19:61012697 [NCBI36]
Chr19:19q13.43
not provided
NM_145007.5(NLRP11):c.-194-7C>T single nucleotide variant not provided [RCV000089525] Chr19:55832101 [GRCh38]
Chr19:56343467 [GRCh37]
Chr19:19q13.43
not provided
NM_145007.5(NLRP11):c.-284-50A>G single nucleotide variant not provided [RCV000089526] Chr19:55832965 [GRCh38]
Chr19:56344331 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.-63+110T>C single nucleotide variant not provided [RCV000089527] Chr19:55831853 [GRCh38]
Chr19:56343219 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.150A>G (p.Glu50=) single nucleotide variant not provided [RCV000089528] Chr19:55818025 [GRCh38]
Chr19:56329391 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.1841+256A>G single nucleotide variant not provided [RCV000089529] Chr19:55808513 [GRCh38]
Chr19:56319879 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.1841+73A>G single nucleotide variant not provided [RCV000089530] Chr19:55808696 [GRCh38]
Chr19:56320062 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.1842-128T>C single nucleotide variant not provided [RCV000089531] Chr19:55808142 [GRCh38]
Chr19:56319508 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.1842-149C>T single nucleotide variant not provided [RCV000089532] Chr19:55808163 [GRCh38]
Chr19:56319529 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.1842-6A>G single nucleotide variant not provided [RCV000089533] Chr19:55808020 [GRCh38]
Chr19:56319386 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.2343-32A>G single nucleotide variant not provided [RCV000089534] Chr19:55792503 [GRCh38]
Chr19:56303869 [GRCh37]
Chr19:19q13.42
not provided
NM_001394894.2(NLRP11):c.2454C>T (p.Tyr818=) single nucleotide variant not provided [RCV000089535] Chr19:55792360 [GRCh38]
Chr19:56303726 [GRCh37]
Chr19:19q13.42
not provided
NM_001394894.2(NLRP11):c.271+53C>G single nucleotide variant not provided [RCV000089536] Chr19:55817851 [GRCh38]
Chr19:56329217 [GRCh37]
Chr19:19q13.43
not provided
NM_001394894.2(NLRP11):c.2744C>T (p.Thr915Ile) single nucleotide variant not provided [RCV000089537] Chr19:55788918 [GRCh38]
Chr19:56300284 [GRCh37]
Chr19:19q13.42
not provided
NM_145007.5(NLRP11):c.-405G>A single nucleotide variant not provided [RCV000089241] Chr19:55836456 [GRCh38]
Chr19:56347822 [GRCh37]
Chr19:19q13.43
not provided
NM_145007.3(NLRP11):c.2171+1589T>C single nucleotide variant Lung cancer [RCV000101321] Chr19:55799983 [GRCh38]
Chr19:56311349 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3 copy number gain See cases [RCV000134174] Chr19:52612432..58581203 [GRCh38]
Chr19:53115685..59092570 [GRCh37]
Chr19:57807497..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55550939-57031576)x1 copy number loss See cases [RCV000135287] Chr19:55550939..57031576 [GRCh38]
Chr19:56062305..57542944 [GRCh37]
Chr19:60754117..62234756 [NCBI36]
Chr19:19q13.42-13.43
likely pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:50152520-58581203)x3 copy number gain See cases [RCV000135843] Chr19:50152520..58581203 [GRCh38]
Chr19:50655777..59092570 [GRCh37]
Chr19:55347589..63784382 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55048514-56972458)x3 copy number gain See cases [RCV000138139] Chr19:55048514..56972458 [GRCh38]
Chr19:55595687..57483826 [GRCh37]
Chr19:60251694..62175638 [NCBI36]
Chr19:19q13.42-13.43
likely pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52143873-58445521)x3 copy number gain See cases [RCV000142008] Chr19:52143873..58445521 [GRCh38]
Chr19:52647126..58956888 [GRCh37]
Chr19:57338938..63648700 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55037146-56982033)x3 copy number gain See cases [RCV000142245] Chr19:55037146..56982033 [GRCh38]
Chr19:55548514..57493401 [GRCh37]
Chr19:60240326..62185213 [NCBI36]
Chr19:19q13.42-13.43
uncertain significance
GRCh38/hg38 19q13.42(chr19:55066790-55789870)x3 copy number gain See cases [RCV000142067] Chr19:55066790..55789870 [GRCh38]
Chr19:55578158..56301236 [GRCh37]
Chr19:60269970..60993048 [NCBI36]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:56200298-57654005)x1 copy number loss Breast ductal adenocarcinoma [RCV000207313] Chr19:56200298..57654005 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
chr19:56133299..57648277 complex variant complex Breast ductal adenocarcinoma [RCV000207023] Chr19:56133299..57648277 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55549385-57489784)x3 copy number gain See cases [RCV000510290] Chr19:55549385..57489784 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:56286299-56368427)x3 copy number gain not provided [RCV000752788] Chr19:56286299..56368427 [GRCh37]
Chr19:19q13.42-13.43
benign
GRCh37/hg19 19q13.42-13.43(chr19:54344821-58956888)x3 copy number gain See cases [RCV000448186] Chr19:54344821..58956888 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
NM_001394894.2(NLRP11):c.625G>A (p.Asp209Asn) single nucleotide variant not specified [RCV004319588] Chr19:55809985 [GRCh38]
Chr19:56321351 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.3066G>C (p.Met1022Ile) single nucleotide variant not specified [RCV004331833] Chr19:55785661 [GRCh38]
Chr19:56297027 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic|uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55844155-57408007)x3 copy number gain See cases [RCV000511123] Chr19:55844155..57408007 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.223A>G (p.Met75Val) single nucleotide variant not specified [RCV004332861] Chr19:55817952 [GRCh38]
Chr19:56329318 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
Single allele deletion not provided [RCV000678017] Chr19:55583239..55929986 [GRCh38]
Chr19:56094605..56441352 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55779884-56896574)x1 copy number loss not provided [RCV000684089] Chr19:55779884..56896574 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54196216-58759679)x3 copy number gain not provided [RCV000684095] Chr19:54196216..58759679 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:56246520-56342061)x3 copy number gain not provided [RCV000752786] Chr19:56246520..56342061 [GRCh37]
Chr19:19q13.42-13.43
benign
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
NM_001394894.2(NLRP11):c.597G>T (p.Leu199Phe) single nucleotide variant not specified [RCV004315107] Chr19:55810013 [GRCh38]
Chr19:56321379 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.3074C>T (p.Ser1025Leu) single nucleotide variant not provided [RCV000971969] Chr19:55785653 [GRCh38]
Chr19:56297019 [GRCh37]
Chr19:19q13.42
benign
NM_001394894.2(NLRP11):c.2374T>G (p.Cys792Gly) single nucleotide variant not provided [RCV000882529] Chr19:55792440 [GRCh38]
Chr19:56303806 [GRCh37]
Chr19:19q13.42
benign
GRCh37/hg19 19q13.43(chr19:56309732-56393350)x1 copy number loss not provided [RCV000849228] Chr19:56309732..56393350 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:56286280-56321640)x1 copy number loss not provided [RCV000849480] Chr19:56286280..56321640 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.3004A>G (p.Ile1002Val) single nucleotide variant not specified [RCV004301517] Chr19:55785723 [GRCh38]
Chr19:56297089 [GRCh37]
Chr19:19q13.42
likely benign
NM_001394894.2(NLRP11):c.252G>C (p.Lys84Asn) single nucleotide variant not specified [RCV004288699] Chr19:55817923 [GRCh38]
Chr19:56329289 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2929A>C (p.Ile977Leu) single nucleotide variant not provided [RCV000969832] Chr19:55785798 [GRCh38]
Chr19:56297164 [GRCh37]
Chr19:19q13.42
benign
GRCh37/hg19 19q13.43(chr19:56332374-56796637)x3 copy number gain not provided [RCV002472859] Chr19:56332374..56796637 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:48463931-57095254)x3 copy number gain not provided [RCV001259944] Chr19:48463931..57095254 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:56273044-56374621)x1 copy number loss not provided [RCV001259949] Chr19:56273044..56374621 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55247893-56503347)x1 copy number loss not provided [RCV001834407] Chr19:55247893..56503347 [GRCh37]
Chr19:19q13.42-13.43
likely pathogenic
GRCh37/hg19 19q13.43(chr19:56332200-57126728) copy number gain not specified [RCV002052691] Chr19:56332200..57126728 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55434660-56463734)x1 copy number loss not provided [RCV002279751] Chr19:55434660..56463734 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.2391A>T (p.Arg797Ser) single nucleotide variant not specified [RCV004332368] Chr19:55792423 [GRCh38]
Chr19:56303789 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:56286281-56395259)x1 copy number loss not provided [RCV002472684] Chr19:56286281..56395259 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.1742C>T (p.Ser581Leu) single nucleotide variant not specified [RCV004171366] Chr19:55808868 [GRCh38]
Chr19:56320234 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2450A>T (p.Asn817Ile) single nucleotide variant not specified [RCV004077007] Chr19:55792364 [GRCh38]
Chr19:56303730 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2129A>G (p.His710Arg) single nucleotide variant not specified [RCV004107707] Chr19:55801614 [GRCh38]
Chr19:56312980 [GRCh37]
Chr19:19q13.43
likely benign
NM_001394894.2(NLRP11):c.2606G>A (p.Ser869Asn) single nucleotide variant not specified [RCV004218662] Chr19:55789307 [GRCh38]
Chr19:56300673 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.841C>T (p.Arg281Cys) single nucleotide variant not specified [RCV004140690] Chr19:55809769 [GRCh38]
Chr19:56321135 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2143G>A (p.Glu715Lys) single nucleotide variant not specified [RCV004132085] Chr19:55801600 [GRCh38]
Chr19:56312966 [GRCh37]
Chr19:19q13.43
likely benign
NM_001394894.2(NLRP11):c.2185G>C (p.Asp729His) single nucleotide variant not specified [RCV004228595] Chr19:55796237 [GRCh38]
Chr19:56307603 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.617A>T (p.Asp206Val) single nucleotide variant not specified [RCV004209423] Chr19:55809993 [GRCh38]
Chr19:56321359 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.535A>G (p.Met179Val) single nucleotide variant not specified [RCV004099812] Chr19:55810075 [GRCh38]
Chr19:56321441 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1382C>T (p.Ala461Val) single nucleotide variant not specified [RCV004229822] Chr19:55809228 [GRCh38]
Chr19:56320594 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2329C>A (p.Leu777Ile) single nucleotide variant not specified [RCV004165315] Chr19:55796093 [GRCh38]
Chr19:56307459 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.1953G>T (p.Arg651Ser) single nucleotide variant not specified [RCV004091506] Chr19:55807903 [GRCh38]
Chr19:56319269 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.567C>A (p.His189Gln) single nucleotide variant not specified [RCV004185572] Chr19:55810043 [GRCh38]
Chr19:56321409 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2278A>G (p.Ser760Gly) single nucleotide variant not specified [RCV004079841] Chr19:55796144 [GRCh38]
Chr19:56307510 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2906T>C (p.Val969Ala) single nucleotide variant not specified [RCV004122349] Chr19:55785821 [GRCh38]
Chr19:56297187 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.103C>A (p.Leu35Ile) single nucleotide variant not specified [RCV004112306] Chr19:55818072 [GRCh38]
Chr19:56329438 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2698A>C (p.Met900Leu) single nucleotide variant not specified [RCV004225406] Chr19:55788964 [GRCh38]
Chr19:56300330 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.1445G>A (p.Arg482Lys) single nucleotide variant not specified [RCV004149787] Chr19:55809165 [GRCh38]
Chr19:56320531 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2060G>A (p.Arg687His) single nucleotide variant not specified [RCV004078675] Chr19:55801683 [GRCh38]
Chr19:56313049 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1994G>A (p.Arg665His) single nucleotide variant not specified [RCV004069463] Chr19:55807862 [GRCh38]
Chr19:56319228 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.230G>A (p.Arg77His) single nucleotide variant not specified [RCV004215854] Chr19:55817945 [GRCh38]
Chr19:56329311 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.841C>G (p.Arg281Gly) single nucleotide variant not specified [RCV004125623] Chr19:55809769 [GRCh38]
Chr19:56321135 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2798G>C (p.Gly933Ala) single nucleotide variant not specified [RCV004211329] Chr19:55788864 [GRCh38]
Chr19:56300230 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.520G>A (p.Glu174Lys) single nucleotide variant not specified [RCV004080258] Chr19:55810090 [GRCh38]
Chr19:56321456 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2830C>T (p.Pro944Ser) single nucleotide variant not specified [RCV004180809] Chr19:55788832 [GRCh38]
Chr19:56300198 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.134T>C (p.Ile45Thr) single nucleotide variant not specified [RCV004182515] Chr19:55818041 [GRCh38]
Chr19:56329407 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1172T>G (p.Leu391Arg) single nucleotide variant not specified [RCV004263255] Chr19:55809438 [GRCh38]
Chr19:56320804 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1253G>C (p.Arg418Thr) single nucleotide variant not specified [RCV004265056] Chr19:55809357 [GRCh38]
Chr19:56320723 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2783A>G (p.His928Arg) single nucleotide variant not specified [RCV004277852] Chr19:55788879 [GRCh38]
Chr19:56300245 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.1574C>T (p.Ser525Leu) single nucleotide variant not specified [RCV004356215] Chr19:55809036 [GRCh38]
Chr19:56320402 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.229C>T (p.Arg77Cys) single nucleotide variant not specified [RCV004352189] Chr19:55817946 [GRCh38]
Chr19:56329312 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.370G>A (p.Val124Ile) single nucleotide variant not specified [RCV004354846] Chr19:55810240 [GRCh38]
Chr19:56321606 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1023A>T (p.Leu341Phe) single nucleotide variant not specified [RCV004351000] Chr19:55809587 [GRCh38]
Chr19:56320953 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:49625130-57647352)x3 copy number gain not provided [RCV003485200] Chr19:49625130..57647352 [GRCh37]
Chr19:19q13.33-13.43
likely pathogenic
NM_001394894.2(NLRP11):c.1347A>C (p.Ile449=) single nucleotide variant not provided [RCV003415461] Chr19:55809263 [GRCh38]
Chr19:56320629 [GRCh37]
Chr19:19q13.43
likely benign
GRCh37/hg19 19q13.42-13.43(chr19:56080158-57672397)x1 copy number loss not specified [RCV003986104] Chr19:56080158..57672397 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.1906C>T (p.Arg636Trp) single nucleotide variant not specified [RCV004495423] Chr19:55807950 [GRCh38]
Chr19:56319316 [GRCh37]
Chr19:19q13.43
likely benign
NM_001394894.2(NLRP11):c.591C>A (p.Ser197Arg) single nucleotide variant not specified [RCV004495440] Chr19:55810019 [GRCh38]
Chr19:56321385 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1734G>C (p.Met578Ile) single nucleotide variant not specified [RCV004495422] Chr19:55808876 [GRCh38]
Chr19:56320242 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2175G>T (p.Leu725Phe) single nucleotide variant not specified [RCV004495426] Chr19:55796247 [GRCh38]
Chr19:56307613 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.556C>T (p.Leu186Phe) single nucleotide variant not specified [RCV004495438] Chr19:55810054 [GRCh38]
Chr19:56321420 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.602A>G (p.Glu201Gly) single nucleotide variant not specified [RCV004495441] Chr19:55810008 [GRCh38]
Chr19:56321374 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1567T>C (p.Trp523Arg) single nucleotide variant not specified [RCV004495421] Chr19:55809043 [GRCh38]
Chr19:56320409 [GRCh37]
Chr19:19q13.43
likely benign
NM_001394894.2(NLRP11):c.236A>G (p.Glu79Gly) single nucleotide variant not specified [RCV004495431] Chr19:55817939 [GRCh38]
Chr19:56329305 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2720G>T (p.Arg907Leu) single nucleotide variant not specified [RCV004495433] Chr19:55788942 [GRCh38]
Chr19:56300308 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2287A>T (p.Met763Leu) single nucleotide variant not specified [RCV004495429] Chr19:55796135 [GRCh38]
Chr19:56307501 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2404A>T (p.Ser802Cys) single nucleotide variant not specified [RCV004495432] Chr19:55792410 [GRCh38]
Chr19:56303776 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.3071C>T (p.Thr1024Met) single nucleotide variant not specified [RCV004495437] Chr19:55785656 [GRCh38]
Chr19:56297022 [GRCh37]
Chr19:19q13.42
likely benign
NM_001394894.2(NLRP11):c.993A>G (p.Ile331Met) single nucleotide variant not specified [RCV004495442] Chr19:55809617 [GRCh38]
Chr19:56320983 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.1951A>G (p.Arg651Gly) single nucleotide variant not specified [RCV004495425] Chr19:55807905 [GRCh38]
Chr19:56319271 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2311C>A (p.Leu771Ile) single nucleotide variant not specified [RCV004495430] Chr19:55796111 [GRCh38]
Chr19:56307477 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2833G>A (p.Asp945Asn) single nucleotide variant not specified [RCV004495435] Chr19:55788829 [GRCh38]
Chr19:56300195 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2192G>A (p.Arg731Gln) single nucleotide variant not specified [RCV004495427] Chr19:55796230 [GRCh38]
Chr19:56307596 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.2723C>A (p.Ser908Tyr) single nucleotide variant not specified [RCV004495434] Chr19:55788939 [GRCh38]
Chr19:56300305 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.3010C>T (p.Pro1004Ser) single nucleotide variant not specified [RCV004495436] Chr19:55785717 [GRCh38]
Chr19:56297083 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_001394894.2(NLRP11):c.1766G>A (p.Cys589Tyr) single nucleotide variant not specified [RCV004343688] Chr19:55808844 [GRCh38]
Chr19:56320210 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3 copy number gain See cases [RCV000134139] Chr19:52955056..58581203 [GRCh38]
Chr19:53458309..59092570 [GRCh37]
Chr19:58150121..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50489390-59095359)x3 copy number gain See cases [RCV000445925] Chr19:50489390..59095359 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
NM_001394894.2(NLRP11):c.1511G>A (p.Arg504Lys) single nucleotide variant not specified [RCV004322030] Chr19:55809099 [GRCh38]
Chr19:56320465 [GRCh37]
Chr19:19q13.43
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:50740074-59097160)x3 copy number gain not provided [RCV000740208] Chr19:50740074..59097160 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:54334195-56434037)x3 copy number gain not provided [RCV001259948] Chr19:54334195..56434037 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_001394894.2(NLRP11):c.2333T>C (p.Ile778Thr) single nucleotide variant not specified [RCV004181548] Chr19:55796089 [GRCh38]
Chr19:56307455 [GRCh37]
Chr19:19q13.42
likely benign
NM_001394894.2(NLRP11):c.1920C>G (p.Ile640Met) single nucleotide variant not specified [RCV004273393] Chr19:55807936 [GRCh38]
Chr19:56319302 [GRCh37]
Chr19:19q13.43
uncertain significance
NM_001394894.2(NLRP11):c.2236G>A (p.Gly746Arg) single nucleotide variant not specified [RCV004256463] Chr19:55796186 [GRCh38]
Chr19:56307552 [GRCh37]
Chr19:19q13.42
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:935
Count of miRNA genes:425
Interacting mature miRNAs:455
Transcripts:ENST00000360133, ENST00000443188, ENST00000589093, ENST00000589824, ENST00000590409, ENST00000592953, ENST00000593208, ENST00000593244
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-153591  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371956,308,407 - 56,308,737UniSTSGRCh37
Build 361961,000,219 - 61,000,549RGDNCBI36
Celera1953,353,565 - 53,353,895RGD
Cytogenetic Map19q13.43UniSTS
HuRef1952,620,594 - 52,620,924UniSTS
TNG Radiation Hybrid Map1919976.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 68 1 2 8
Low 50 2 147 140 228 141 33 17 40 98 510 62 1
Below cutoff 1389 1017 1101 388 943 272 1632 906 1907 230 582 798 119 511 1108 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_054722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_169622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY095145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY154466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY168967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY168968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY226382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU622142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000589093   ⟹   ENSP00000466285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,785,399 - 55,831,999 (-)Ensembl
RefSeq Acc Id: ENST00000589824   ⟹   ENSP00000468082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,785,397 - 55,818,237 (-)Ensembl
RefSeq Acc Id: ENST00000590409   ⟹   ENSP00000466582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,785,404 - 55,836,762 (-)Ensembl
RefSeq Acc Id: ENST00000592953   ⟹   ENSP00000468196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,785,404 - 55,831,987 (-)Ensembl
RefSeq Acc Id: ENST00000593208   ⟹   ENSP00000468696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,810,236 - 55,836,800 (-)Ensembl
RefSeq Acc Id: ENST00000593244   ⟹   ENSP00000467988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,792,370 - 55,836,439 (-)Ensembl
RefSeq Acc Id: NM_001297743   ⟹   NP_001284672
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
CHM1_11956,290,334 - 56,337,032 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001385451   ⟹   NP_001372380
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001385453   ⟹   NP_001372382
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394894   ⟹   NP_001381823
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,831,999 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,931,345 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145007   ⟹   NP_659444
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
GRCh371956,296,763 - 56,348,128 (-)RGD
Build 361960,988,577 - 61,035,172 (-)NCBI Archive
Celera1953,341,920 - 53,393,276 (-)RGD
HuRef1952,608,953 - 52,660,294 (-)ENTREZGENE
CHM1_11956,290,334 - 56,341,701 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169620
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169621
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NR_169622
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,785,399 - 55,836,575 (-)NCBI
T2T-CHM13v2.01958,884,750 - 58,935,921 (-)NCBI
Sequence:
RefSeq Acc Id: NP_659444   ⟸   NM_145007
- Peptide Label: isoform 1
- UniProtKB: Q53ZZ0 (UniProtKB/Swiss-Prot),   Q2TV86 (UniProtKB/Swiss-Prot),   Q2TV85 (UniProtKB/Swiss-Prot),   C9JSF5 (UniProtKB/Swiss-Prot),   Q8NBF5 (UniProtKB/Swiss-Prot),   P59045 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001284672   ⟸   NM_001297743
- Peptide Label: isoform 2
- UniProtKB: P59045 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000466285   ⟸   ENST00000589093
RefSeq Acc Id: ENSP00000468082   ⟸   ENST00000589824
RefSeq Acc Id: ENSP00000466582   ⟸   ENST00000590409
RefSeq Acc Id: ENSP00000468196   ⟸   ENST00000592953
RefSeq Acc Id: ENSP00000468696   ⟸   ENST00000593208
RefSeq Acc Id: ENSP00000467988   ⟸   ENST00000593244
RefSeq Acc Id: NP_001372380   ⟸   NM_001385451
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001372382   ⟸   NM_001385453
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001381823   ⟸   NM_001394894
- Peptide Label: isoform 1
- UniProtKB: Q53ZZ0 (UniProtKB/Swiss-Prot),   Q2TV86 (UniProtKB/Swiss-Prot),   Q2TV85 (UniProtKB/Swiss-Prot),   P59045 (UniProtKB/Swiss-Prot),   C9JSF5 (UniProtKB/Swiss-Prot),   Q8NBF5 (UniProtKB/Swiss-Prot)
Protein Domains
NACHT   Pyrin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59045-F1-model_v2 AlphaFold P59045 1-1033 view protein structure

Promoters
RGD ID:13205801
Promoter ID:EPDNEW_H26481
Type:initiation region
Name:NLRP11_1
Description:NLR family pyrin domain containing 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26483  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,831,985 - 55,832,045EPDNEW
RGD ID:13205805
Promoter ID:EPDNEW_H26483
Type:multiple initiation site
Name:NLRP11_2
Description:NLR family pyrin domain containing 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26481  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381955,836,800 - 55,836,860EPDNEW
RGD ID:6795854
Promoter ID:HG_KWN:31091
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:UC002QLZ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361961,012,466 - 61,012,966 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:22945 AgrOrtholog
COSMIC NLRP11 COSMIC
Ensembl Genes ENSG00000179873 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000589093 ENTREZGENE
  ENST00000589093.6 UniProtKB/Swiss-Prot
  ENST00000589824 ENTREZGENE
  ENST00000589824.6 UniProtKB/Swiss-Prot
  ENST00000590409 ENTREZGENE
  ENST00000590409.5 UniProtKB/TrEMBL
  ENST00000592953 ENTREZGENE
  ENST00000592953.5 UniProtKB/Swiss-Prot
  ENST00000593208.1 UniProtKB/TrEMBL
  ENST00000593244.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000179873 GTEx
HGNC ID HGNC:22945 ENTREZGENE
Human Proteome Map NLRP11 Human Proteome Map
InterPro Cu2_ascorb_mOase_CS-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DAPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NACHT_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NLRC_HD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOD2_WH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:204801 UniProtKB/Swiss-Prot
NCBI Gene 204801 ENTREZGENE
OMIM 609664 OMIM
PANTHER NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/Swiss-Prot
  NACHT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NLRC4_HD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOD2_WH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162397841 PharmGKB
PROSITE CU2_MONOOXYGENASE_1 UniProtKB/TrEMBL
  DAPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NACHT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/Swiss-Prot
  PYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47986 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C9JSF5 ENTREZGENE
  K7EMN8_HUMAN UniProtKB/TrEMBL
  K7EQV0_HUMAN UniProtKB/TrEMBL
  K7ESF9_HUMAN UniProtKB/TrEMBL
  NAL11_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q2TV85 ENTREZGENE
  Q2TV86 ENTREZGENE
  Q53ZZ0 ENTREZGENE
  Q8NBF5 ENTREZGENE
UniProt Secondary C9JSF5 UniProtKB/Swiss-Prot
  Q2TV85 UniProtKB/Swiss-Prot
  Q2TV86 UniProtKB/Swiss-Prot
  Q53ZZ0 UniProtKB/Swiss-Prot
  Q8NBF5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 NLRP11  NLR family pyrin domain containing 11  NLRP11  NLR family, pyrin domain containing 11  Symbol and/or name change 5135510 APPROVED