IGHV3OR16-16 (immunoglobulin heavy variable 3/OR16-16 (pseudogene)) - Rat Genome Database

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Gene: IGHV3OR16-16 (immunoglobulin heavy variable 3/OR16-16 (pseudogene)) Homo sapiens
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Symbol: IGHV3OR16-16 (Ensembl: IGHV3OR16-15)
Name: immunoglobulin heavy variable 3/OR16-16 (pseudogene) (Ensembl:immunoglobulin heavy variable 3/OR16-15 (pseudogene))
RGD ID: 1349167
HGNC Page HGNC:5640
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: INFERRED
Previously known as: IGHV3OR1616
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381633,949,898 - 33,950,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,903,442 - 32,903,894 (+)EnsemblGRCh38hg38GRCh38
GRCh371633,752,365 - 33,752,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.2NCBI
T2T-CHM13v2.01635,522,293 - 35,522,857 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7959766   PMID:8419161  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:254
Interacting mature miRNAs:273
Transcripts:ENST00000565463
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 7 1
Low 312 51 51 102 304 2 5 2 2 13 28 130 100 10 2
Below cutoff 418 424 187 87 444 47 216 58 66 51 251 426 41 130 111

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000565463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,903,442 - 32,903,894 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGHV3OR16-16 COSMIC
GTEx IGHV3OR16-16 GTEx
HGNC ID HGNC:5640 ENTREZGENE
Human Proteome Map IGHV3OR16-16 Human Proteome Map
NCBI Gene 28301 ENTREZGENE
PharmGKB PA35237 PharmGKB