OR7A18P (olfactory receptor family 7 subfamily A member 18 pseudogene) - Rat Genome Database

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Gene: OR7A18P (olfactory receptor family 7 subfamily A member 18 pseudogene) Homo sapiens
Analyze
Symbol: OR7A18P
Name: olfactory receptor family 7 subfamily A member 18 pseudogene
RGD ID: 1348742
HGNC Page HGNC:15399
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,886,846 - 14,887,272 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,886,839 - 14,887,115 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,997,658 - 14,998,084 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,858,558 - 14,859,184 (-)NCBINCBI36Build 36hg18NCBI36
Celera1914,893,403 - 14,893,829 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,565,605 - 14,566,031 (-)NCBIHuRef
CHM1_11914,997,146 - 14,997,572 (-)NCBICHM1_1
T2T-CHM13v2.01915,014,441 - 15,014,867 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:246
Count of miRNA genes:241
Interacting mature miRNAs:244
Transcripts:ENST00000600416
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 2 1 1 6 2 1
Below cutoff 29 39 21 9 33 2 62 24 38 3 26 18 7 17 38

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000600416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1914,886,839 - 14,887,115 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR7A18P COSMIC
Ensembl Genes ENSG00000269678 Ensembl
GTEx ENSG00000269678 GTEx
HGNC ID HGNC:15399 ENTREZGENE
Human Proteome Map OR7A18P Human Proteome Map
NCBI Gene 81081 ENTREZGENE
PharmGKB PA32617 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR7A18P  olfactory receptor family 7 subfamily A member 18 pseudogene    olfactory receptor, family 7, subfamily A, member 18 pseudogene  Symbol and/or name change 5135510 APPROVED
2011-09-01 OR7A18P  olfactory receptor, family 7, subfamily A, member 18 pseudogene  OR7A18P  olfactory receptor, family 7, subfamily A, member 18 pseudogene  Symbol and/or name change 5135510 APPROVED