CYP2G1P (cytochrome P450 family 2 subfamily G member 1, pseudogene) - Rat Genome Database

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Gene: CYP2G1P (cytochrome P450 family 2 subfamily G member 1, pseudogene) Homo sapiens
Analyze
Symbol: CYP2G1P
Name: cytochrome P450 family 2 subfamily G member 1, pseudogene
RGD ID: 1347954
HGNC Page HGNC:2633
Description: Predicted to enable heme binding activity; iron ion binding activity; and monooxygenase activity. Predicted to be involved in epoxygenase P450 pathway and xenobiotic metabolic process. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: CYP2G1; CYP2G2P; CYP2GP1
RGD Orthologs
Mouse
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,890,826 - 40,900,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,891,219 - 40,900,155 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,890,826 - 40,912,357 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,396,731 - 41,406,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,088,964 - 46,097,897 (+)NCBINCBI36Build 36hg18NCBI36
Celera1938,197,246 - 38,206,180 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,829,744 - 37,839,435 (+)NCBIHuRef
CHM1_11941,396,451 - 41,406,129 (+)NCBICHM1_1
T2T-CHM13v2.01943,711,502 - 43,721,205 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8561797   PMID:11186129   PMID:14702039   PMID:15128046   PMID:18085818   PMID:21873635  


Genomics

Comparative Map Data
CYP2G1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,890,826 - 40,900,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,891,219 - 40,900,155 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,890,826 - 40,912,357 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,396,731 - 41,406,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,088,964 - 46,097,897 (+)NCBINCBI36Build 36hg18NCBI36
Celera1938,197,246 - 38,206,180 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,829,744 - 37,839,435 (+)NCBIHuRef
CHM1_11941,396,451 - 41,406,129 (+)NCBICHM1_1
T2T-CHM13v2.01943,711,502 - 43,721,205 (+)NCBIT2T-CHM13v2.0
Cyp2g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39726,508,352 - 26,520,622 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl726,508,317 - 26,520,630 (+)EnsemblGRCm39 Ensembl
GRCm38726,808,927 - 26,821,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl726,808,892 - 26,821,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv37727,593,946 - 27,606,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36726,517,687 - 26,529,957 (+)NCBIMGSCv36mm8
Celera721,392,851 - 21,404,941 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.5NCBI
Cyp2g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,273,309 - 91,284,499 (+)NCBIGRCr8
mRatBN7.2182,145,635 - 82,156,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,145,073 - 82,156,828 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx187,562,682 - 87,573,880 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,048,902 - 96,060,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,318,549 - 89,329,750 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,626,639 - 83,638,154 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,626,639 - 83,637,780 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0184,842,671 - 84,853,812 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4181,918,200 - 81,929,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1181,996,312 - 82,007,746 (+)NCBI
Celera176,564,738 - 76,575,911 (+)NCBICelera
Cytogenetic Map1q21NCBI
LOC484492
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,873,533 - 112,883,620 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,237,166 - 112,286,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,432,522 - 113,482,149 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11112,992,538 - 113,042,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,623,934 - 112,673,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,618,432 - 113,667,970 (+)NCBIUU_Cfam_GSD_1.0
CYP2G2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1649,069,613 - 49,084,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,852,062 - 44,865,622 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:412
Count of miRNA genes:327
Interacting mature miRNAs:350
Transcripts:ENST00000252909, ENST00000597833
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D19S223  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371941,394,828 - 41,395,062UniSTSGRCh37
Build 361946,086,668 - 46,086,902RGDNCBI36
Celera1938,194,950 - 38,195,184RGD
Cytogenetic Map19q13.2UniSTS
HuRef1937,827,843 - 37,828,075UniSTS
Marshfield Genetic Map1964.16UniSTS
Marshfield Genetic Map1964.16RGD
Genethon Genetic Map1963.6UniSTS
TNG Radiation Hybrid Map1915503.0UniSTS
deCODE Assembly Map1966.68UniSTS
GeneMap99-GB4 RH Map19236.24UniSTS
NCBI RH Map19420.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 17 55 221 41 27 41 163 21 561 4 306 397 64 119
Below cutoff 2081 2452 1361 480 994 338 3674 2000 2969 184 975 1001 149 1110 2459 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000252909
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1940,890,826 - 40,900,508 (+)Ensembl
RefSeq Acc Id: ENST00000597833
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1940,891,219 - 40,900,155 (+)Ensembl
RefSeq Acc Id: ENST00000651727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1940,892,936 - 40,912,357 (+)Ensembl
RefSeq Acc Id: NR_040249
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381940,890,826 - 40,900,508 (+)NCBI
GRCh371941,396,731 - 41,406,413 (+)ENTREZGENE
HuRef1937,829,744 - 37,839,435 (+)ENTREZGENE
CHM1_11941,396,451 - 41,406,129 (+)NCBI
T2T-CHM13v2.01943,711,502 - 43,721,205 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAB35962 (Get FASTA)   NCBI Sequence Viewer  
  BAC86855 (Get FASTA)   NCBI Sequence Viewer  
  Q6ZSU1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZSU1-F1-model_v2 AlphaFold Q6ZSU1 1-146 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2633 AgrOrtholog
COSMIC CYP2G1P COSMIC
Ensembl Genes ENSG00000130612 Ensembl
  ENSG00000290611 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000252909 ENTREZGENE
Gene3D-CATH 1.10.630.10 UniProtKB/Swiss-Prot
GTEx ENSG00000130612 GTEx
  ENSG00000290611 GTEx
HGNC ID HGNC:2633 ENTREZGENE
Human Proteome Map CYP2G1P Human Proteome Map
InterPro Cyt_P450 UniProtKB/Swiss-Prot
  Cyt_P450_CS UniProtKB/Swiss-Prot
  Cyt_P450_E_grp-I UniProtKB/Swiss-Prot
  Cyt_P450_sf UniProtKB/Swiss-Prot
NCBI Gene 22952 ENTREZGENE
OMIM 601133 OMIM
PANTHER CYTOCHROME P450 UniProtKB/Swiss-Prot
  CYTOCHROME P450 508A4-RELATED UniProtKB/Swiss-Prot
Pfam p450 UniProtKB/Swiss-Prot
PharmGKB PA27110 PharmGKB
PRINTS EP450I UniProtKB/Swiss-Prot
  P450 UniProtKB/Swiss-Prot
PROSITE CYTOCHROME_P450 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48264 UniProtKB/Swiss-Prot
UniProt C2G1P_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 CYP2G1P  cytochrome P450 family 2 subfamily G member 1, pseudogene    cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene  Symbol and/or name change 5135510 APPROVED