KCNMB3P1 (KCNMB3 pseudogene 1) - Rat Genome Database

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Gene: KCNMB3P1 (KCNMB3 pseudogene 1) Homo sapiens
Analyze
Symbol: KCNMB3P1
Name: KCNMB3 pseudogene 1
RGD ID: 1347636
HGNC Page HGNC:6288
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KCNMB2L; KCNMB3L; KCNMB3L1; KCNMBLP; potassium calcium-activated channel subfamily M regulatory beta subunit 3 pseudogene 1
Related Functional Gene: KCNMB3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382216,580,766 - 16,582,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2216,575,363 - 16,582,707 (-)EnsemblGRCh38hg38GRCh38
GRCh372217,061,656 - 17,063,597 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362215,441,456 - 15,443,795 (-)NCBINCBI36Build 36hg18NCBI36
Celera22683,616 - 685,957 (-)NCBICelera
Cytogenetic Map22q11.1NCBI
HuRef22881,087 - 883,428 (-)NCBIHuRef
CHM1_12217,066,332 - 17,068,671 (-)NCBICHM1_1
T2T-CHM13v2.02217,257,312 - 17,259,255 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
Additional References at PubMed
PMID:10585773   PMID:15461802   PMID:20424473  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:215
Interacting mature miRNAs:226
Transcripts:ENST00000472972, ENST00000493696
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
KCNMB3_1988  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372217,061,478 - 17,062,179UniSTSGRCh37
GRCh373178,960,370 - 178,961,074UniSTSGRCh37
Build 363180,443,064 - 180,443,768RGDNCBI36
Celera3177,391,234 - 177,391,938RGD
Celera22683,638 - 684,339UniSTS
HuRef22881,109 - 881,810UniSTS
HuRef3176,363,640 - 176,364,344UniSTS
RH65790  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372217,061,812 - 17,061,953UniSTSGRCh37
GRCh373178,960,707 - 178,960,848UniSTSGRCh37
Build 363180,443,401 - 180,443,542RGDNCBI36
Celera3177,391,571 - 177,391,712RGD
Celera22683,972 - 684,113UniSTS
Cytogenetic Map3q26.3-q27UniSTS
Cytogenetic Map22q11UniSTS
HuRef3176,363,977 - 176,364,118UniSTS
HuRef22881,443 - 881,584UniSTS
GeneMap99-GB4 RH Map3674.48UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 3 2 3 1 1 7 4
Below cutoff 780 847 600 118 312 34 1662 704 1596 108 729 590 84 455 1126

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000472972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2216,581,077 - 16,582,602 (-)Ensembl
RefSeq Acc Id: ENST00000493696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2216,575,363 - 16,582,707 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KCNMB3P1 COSMIC
Ensembl Genes ENSG00000239435 Ensembl
GTEx ENSG00000239435 GTEx
HGNC ID HGNC:6288 ENTREZGENE
Human Proteome Map KCNMB3P1 Human Proteome Map
NCBI Gene 27093 ENTREZGENE
PharmGKB PA30068 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-03 KCNMB3P1  KCNMB3 pseudogene 1  KCNMB3P1  potassium calcium-activated channel subfamily M regulatory beta subunit 3 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-02-10 KCNMB3P1  potassium calcium-activated channel subfamily M regulatory beta subunit 3 pseudogene 1    potassium channel subfamily M regulatory beta subunit 3 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2015-01-20 KCNMB3P1  potassium channel subfamily M regulatory beta subunit 3 pseudogene 1    potassium large conductance calcium-activated channel, subfamily M, beta member 3 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 KCNMB3P1  potassium large conductance calcium-activated channel, subfamily M, beta member 3 pseudogene 1  KCNMB3L  potassium large conductance calcium-activated channel, subfamily M, beta member 3-like  Symbol and/or name change 5135510 APPROVED