MTCO2P1 (MT-CO2 pseudogene 1) - Rat Genome Database

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Pathways
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Gene: MTCO2P1 (MT-CO2 pseudogene 1) Homo sapiens
Analyze
Symbol: MTCO2P1
Name: MT-CO2 pseudogene 1
RGD ID: 1347360
HGNC Page HGNC:16564
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: cytochrome c oxidase ii-like; dJ342K12.1; mitochondrially encoded cytochrome c oxidase II pseudogene 1; MTCO2L
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382060,414,396 - 60,414,872 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2060,414,396 - 60,414,872 (-)EnsemblGRCh38hg38GRCh38
GRCh372058,989,454 - 58,989,930 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362058,422,749 - 58,423,425 (-)NCBINCBI36Build 36hg18NCBI36
Celera2055,729,277 - 55,729,753 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2055,776,340 - 55,776,816 (-)NCBIHuRef
CHM1_12058,890,755 - 58,891,231 (-)NCBICHM1_1
T2T-CHM13v2.02062,199,673 - 62,200,149 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19531499  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:78
Interacting mature miRNAs:78
Transcripts:ENST00000424648
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 9 7 9 1 7 6 7
Below cutoff 77 94 126 29 102 14 266 72 260 22 92 120 16 56 206

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000424648
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2060,414,396 - 60,414,872 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTCO2P1 COSMIC
Ensembl Genes ENSG00000229690 Ensembl, ENTREZGENE
GTEx ENSG00000229690 GTEx
HGNC ID HGNC:16564 ENTREZGENE
Human Proteome Map MTCO2P1 Human Proteome Map
NCBI Gene 140909 ENTREZGENE
PharmGKB PA31228 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTCO2P1  MT-CO2 pseudogene 1    mitochondrially encoded cytochrome c oxidase II pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-07-26 MTCO2P1  mitochondrially encoded cytochrome c oxidase II pseudogene 1    MT-CO2 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 MTCO2P1  MT-CO2 pseudogene 1  MTCO2L  MTCO2 like  Symbol and/or name change 5135510 APPROVED