Gene Ontology Annotations Click to see Annotation Detail View
Biological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | biological_process | involved_in | ND | | 150520179 | | UniProt | GO_REF:0000015 | |
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Gene Ontology Annotations Click to see Annotation Detail View
Biological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | biological_process | involved_in | ND | | 150520179 | | UniProt | GO_REF:0000015 | |
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# | Reference Title | Reference Citation |
1. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 6q25.3-27(chr6:160484810-170612011)x1 | copy number loss | See cases [RCV000134021] | Chr6:160484810..170612011 [GRCh38] Chr6:160905842..170921099 [GRCh37] Chr6:160825832..170763024 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:164790270-170612001)x1 | copy number loss | See cases [RCV000135415] | Chr6:164790270..170612001 [GRCh38] Chr6:165203779..170921089 [GRCh37] Chr6:165123769..170763014 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q27(chr6:167145050-170714507)x1 | copy number loss | See cases [RCV000137523] | Chr6:167145050..170714507 [GRCh38] Chr6:167558538..171023595 [GRCh37] Chr6:167478528..170865520 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:154539655-170714507)x1 | copy number loss | See cases [RCV000137381] | Chr6:154539655..170714507 [GRCh38] Chr6:154860789..171023595 [GRCh37] Chr6:154902481..170865520 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159915390-170714507)x1 | copy number loss | See cases [RCV000139636] | Chr6:159915390..170714507 [GRCh38] Chr6:160336422..171023595 [GRCh37] Chr6:160256412..170865520 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:167689219-167795754)x3 | copy number gain | See cases [RCV000140951] | Chr6:167689219..167795754 [GRCh38] Chr6:168089899..168196434 [GRCh37] Chr6:167832748..167939283 [NCBI36] Chr6:6q27 |
benign |
GRCh38/hg38 6q25.2-27(chr6:152793402-170610394)x1 | copy number loss | See cases [RCV000141880] | Chr6:152793402..170610394 [GRCh38] Chr6:153114537..170919482 [GRCh37] Chr6:153156230..170761407 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:152376338-170612001)x3 | copy number gain | See cases [RCV000142594] | Chr6:152376338..170612001 [GRCh38] Chr6:152697473..170921089 [GRCh37] Chr6:152739166..170763014 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:160899898-170610394)x1 | copy number loss | See cases [RCV000143619] | Chr6:160899898..170610394 [GRCh38] Chr6:161320930..170919482 [GRCh37] Chr6:161240920..170761407 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:167760366-170610394)x1 | copy number loss | See cases [RCV000143582] | Chr6:167760366..170610394 [GRCh38] Chr6:168161046..170919482 [GRCh37] Chr6:167903895..170761407 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q24.1-27(chr6:141132990-169339571)x3 | copy number gain | See cases [RCV000050604] | Chr6:141132990..169339571 [GRCh38] Chr6:141454127..169739666 [GRCh37] Chr6:141495820..169481591 [NCBI36] Chr6:6q24.1-27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:154118058-170602152)x1 | copy number loss | See cases [RCV000052207] | Chr6:154118058..170602152 [GRCh38] Chr6:154439193..170911240 [GRCh37] Chr6:154480885..170753165 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159825913-170612001)x1 | copy number loss | See cases [RCV000052211] | Chr6:159825913..170612001 [GRCh38] Chr6:160246945..170921089 [GRCh37] Chr6:160166935..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160328288-170612001)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|See cases [RCV000052212] | Chr6:160328288..170612001 [GRCh38] Chr6:160749320..170921089 [GRCh37] Chr6:160669310..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160359686-170608818)x1 | copy number loss | See cases [RCV000052213] | Chr6:160359686..170608818 [GRCh38] Chr6:160780718..170917906 [GRCh37] Chr6:160700708..170759831 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160422761-170612001)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|See cases [RCV000052214] | Chr6:160422761..170612001 [GRCh38] Chr6:160843793..170921089 [GRCh37] Chr6:160763783..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:161205328-170581161)x1 | copy number loss | See cases [RCV000052215] | Chr6:161205328..170581161 [GRCh38] Chr6:161626360..170890249 [GRCh37] Chr6:161546350..170732174 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:162042846-170608818)x1 | copy number loss | See cases [RCV000052223] | Chr6:162042846..170608818 [GRCh38] Chr6:162463878..170917906 [GRCh37] Chr6:162383868..170759831 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:162789915-170602152)x1 | copy number loss | See cases [RCV000052224] | Chr6:162789915..170602152 [GRCh38] Chr6:163210947..170911240 [GRCh37] Chr6:163130937..170753165 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:163420224-170608818)x1 | copy number loss | See cases [RCV000052225] | Chr6:163420224..170608818 [GRCh38] Chr6:163841256..170917906 [GRCh37] Chr6:163761246..170759831 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:165126489-170581161)x1 | copy number loss | See cases [RCV000052226] | Chr6:165126489..170581161 [GRCh38] Chr6:165539978..170890249 [GRCh37] Chr6:165459968..170732174 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q27(chr6:166370159-170602152)x1 | copy number loss | See cases [RCV000052227] | Chr6:166370159..170602152 [GRCh38] Chr6:166783647..170911240 [GRCh37] Chr6:166703637..170753165 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:152376338-170583214)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|See cases [RCV000051902] | Chr6:152376338..170583214 [GRCh38] Chr6:152697473..170892302 [GRCh37] Chr6:152739166..170734227 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:158664768-170612001)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|See cases [RCV000051904] | Chr6:158664768..170612001 [GRCh38] Chr6:159085800..170921089 [GRCh37] Chr6:159005788..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159454639-170612001)x1 | copy number loss | See cases [RCV000052209] | Chr6:159454639..170612001 [GRCh38] Chr6:159875671..170921089 [GRCh37] Chr6:159795661..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:161349282-170584790)x1 | copy number loss | Neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures [RCV003327715] | Chr6:161349282..170584790 [GRCh38] Chr6:6q26-27 |
pathogenic |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
D6S503 |
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GDB:434012 |
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D16S325 |
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D8S2279 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 12 | 133 | 133 | 5 | 133 | 7 | 8 | 2 | 38 | 7 | 7 | |||||||
Low | 1363 | 316 | 1023 | 431 | 468 | 301 | 1611 | 558 | 644 | 250 | 901 | 1186 | 132 | 754 | 965 | 2 | ||
Below cutoff | 1023 | 1829 | 507 | 55 | 384 | 27 | 2436 | 1494 | 2672 | 134 | 466 | 360 | 37 | 1 | 445 | 1606 | 2 | 1 |
RefSeq Acc Id: | ENST00000366822 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000495520 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000687268 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000701277 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_026773 | ||||||||||||||||||||||||||||
RefSeq Status: | PREDICTED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
GenBank Protein | BAA78636 | (Get FASTA) | NCBI Sequence Viewer |
EAW47488 | (Get FASTA) | NCBI Sequence Viewer | |
EAW47489 | (Get FASTA) | NCBI Sequence Viewer | |
Q9Y6Z2 | (Get FASTA) | NCBI Sequence Viewer |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9Y6Z2-F1-model_v2 | AlphaFold | Q9Y6Z2 | 1-57 | view protein structure |
RGD ID: | 15096114 | ||||||||
Promoter ID: | EPDNEWNC_H928 | ||||||||
Type: | initiation region | ||||||||
Name: | LINC01558_1 | ||||||||
Description: | long intergenic non-protein coding RNA 1558 [Source:HGNCSymbol;Acc:HGNC:21235] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
COSMIC | LINC01558 | COSMIC |
Ensembl Genes | ENSG00000146521 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000495520 | ENTREZGENE |
GTEx | ENSG00000146521 | GTEx |
HGNC ID | HGNC:21235 | ENTREZGENE |
Human Proteome Map | LINC01558 | Human Proteome Map |
NCBI Gene | 26238 | ENTREZGENE |
RNAcentral | URS000075EDEF | RNACentral |
UniProt | CF123_HUMAN | UniProtKB/Swiss-Prot, ENTREZGENE |
UniProt Secondary | E1P5C8 | UniProtKB/Swiss-Prot |
Q5TIG8 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2014-10-07 | LINC01558 | long intergenic non-protein coding RNA 1558 | C6orf123 | chromosome 6 open reading frame 123 | Symbol and/or name change | 5135510 | APPROVED |