ST13P3 (ST13, Hsp70 interacting protein pseudogene 3) - Rat Genome Database

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Gene: ST13P3 (ST13, Hsp70 interacting protein pseudogene 3) Homo sapiens
Analyze
Symbol: ST13P3
Name: ST13, Hsp70 interacting protein pseudogene 3
RGD ID: 1346696
HGNC Page HGNC:18552
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FAM10A3; FAM10A3P; suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3
Related Functional Gene: ST13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,015,813 - 106,018,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,015,897 - 106,017,006 (+)EnsemblGRCh38hg38GRCh38
GRCh3712106,409,591 - 106,412,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612104,933,621 - 104,936,417 (+)NCBINCBI36Build 36hg18NCBI36
Celera12106,074,973 - 106,077,569 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12103,470,109 - 103,472,705 (+)NCBIHuRef
CHM1_112106,375,183 - 106,377,779 (+)NCBICHM1_1
T2T-CHM13v2.012105,978,566 - 105,981,162 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12079276  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:121
Interacting mature miRNAs:124
Transcripts:ENST00000546640
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 1 1
Low 368 389 333 94 185 86 1051 298 351 181 484 487 15 269 608 2
Below cutoff 1844 2178 1134 371 1110 229 3067 1691 2869 164 820 980 147 891 2033 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000546640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,015,897 - 106,017,006 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ST13P3 COSMIC
Ensembl Genes ENSG00000257773 Ensembl
GTEx ENSG00000257773 GTEx
HGNC ID HGNC:18552 ENTREZGENE
Human Proteome Map ST13P3 Human Proteome Map
NCBI Gene 144638 ENTREZGENE
PharmGKB PA38571 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 ST13P3  ST13, Hsp70 interacting protein pseudogene 3    suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-07-27 ST13P3  suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3  FAM10A3  family with sequence similarity 10, member A3  Symbol and/or name change 5135510 APPROVED