OR2L1P (olfactory receptor family 2 subfamily L member 1 pseudogene) - Rat Genome Database

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Gene: OR2L1P (olfactory receptor family 2 subfamily L member 1 pseudogene) Homo sapiens
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Symbol: OR2L1P
Name: olfactory receptor family 2 subfamily L member 1 pseudogene
RGD ID: 1346691
HGNC Page HGNC:8265
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: HSHTPCRX02; HTPCRX02; OR2L1; OR2L7P
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,990,267 - 247,991,191 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,990,267 - 247,991,204 (+)EnsemblGRCh38hg38GRCh38
GRCh371248,153,569 - 248,154,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,220,192 - 246,221,116 (+)NCBINCBI36Build 36hg18NCBI36
Build 341244,479,981 - 244,480,324NCBI
Celera1221,438,974 - 221,439,898 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,537,288 - 218,538,212 (+)NCBIHuRef
CHM1_11249,425,902 - 249,426,826 (+)NCBICHM1_1
T2T-CHM13v2.01247,416,312 - 247,417,236 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
lead(0)  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1370859  


Genomics

Variants

.
Variants in OR2L1P
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:72
Interacting mature miRNAs:74
Transcripts:ENST00000422727
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 7 2 27 1 87 1 95 12 87 5 263 32 3 45
Below cutoff 395 261 506 71 495 23 1072 157 1570 54 428 510 49 271 615 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_002145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB065442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X64980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000422727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1247,990,267 - 247,991,204 (+)Ensembl
RefSeq Acc Id: ENST00000641567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1247,980,872 - 247,991,204 (+)Ensembl
RefSeq Acc Id: NR_002145
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381247,990,267 - 247,991,191 (+)NCBI
GRCh371248,153,569 - 248,154,493 (+)RGD
Build 361246,220,192 - 246,221,116 (+)NCBI Archive
Celera1221,438,974 - 221,439,898 (+)RGD
HuRef1218,537,288 - 218,538,212 (+)RGD
CHM1_11249,425,902 - 249,426,826 (+)NCBI
T2T-CHM13v2.01247,416,312 - 247,417,236 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC OR2L1P COSMIC
Ensembl Genes ENSG00000224227 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000422727 ENTREZGENE
GTEx ENSG00000224227 GTEx
HGNC ID HGNC:8265 ENTREZGENE
Human Proteome Map OR2L1P Human Proteome Map
NCBI Gene 26247 ENTREZGENE
PharmGKB PA32182 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR2L1P  olfactory receptor family 2 subfamily L member 1 pseudogene  OR2L1P  olfactory receptor, family 2, subfamily L, member 1 pseudogene  Symbol and/or name change 5135510 APPROVED