HERC2P5 (HERC2 pseudogene 5) - Rat Genome Database

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Gene: HERC2P5 (HERC2 pseudogene 5) Homo sapiens
Analyze
Symbol: HERC2P5
Name: HERC2 pseudogene 5
RGD ID: 1346601
HGNC Page HGNC:4873
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: D16F37S6; hect domain and RLD 2 pseudogene 5
Related Functional Gene: HERC2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381632,741,314 - 32,775,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,742,353 - 32,775,368 (+)EnsemblGRCh38hg38GRCh38
GRCh371632,752,635 - 32,786,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361632,660,066 - 32,694,290 (+)NCBINCBI36Build 36hg18NCBI36
Celera1630,267,097 - 30,285,221 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,569,677 - 29,601,384 (-)NCBIHuRef
CHM1_11633,481,887 - 33,518,128 (-)NCBICHM1_1
T2T-CHM13v2.01633,509,306 - 33,543,363 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9730612  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:370
Count of miRNA genes:337
Interacting mature miRNAs:354
Transcripts:ENST00000562687, ENST00000564458, ENST00000569679, ENST00000569697
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 6 1 16 14 15 15 35 7 33 6 23 54 1 1 1
Below cutoff 1695 1650 1076 275 526 158 2992 1434 2872 173 1088 1071 122 933 1947 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000562687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,742,353 - 32,775,368 (+)Ensembl
RefSeq Acc Id: ENST00000564458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,774,929 - 32,776,196 (+)Ensembl
RefSeq Acc Id: ENST00000569679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,760,943 - 32,771,598 (+)Ensembl
RefSeq Acc Id: ENST00000569697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,741,314 - 32,753,338 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HERC2P5 COSMIC
Ensembl Genes ENSG00000260644 Ensembl, ENTREZGENE
GTEx ENSG00000260644 GTEx
HGNC ID HGNC:4873 ENTREZGENE
Human Proteome Map HERC2P5 Human Proteome Map
NCBI Gene 388254 ENTREZGENE
PharmGKB PA29248 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-12 HERC2P5  HERC2 pseudogene 5  HERC2P5  hect domain and RLD 2 pseudogene 5  Symbol and/or name change 19259463 PROVISIONAL