RPL10P1 (ribosomal protein L10 pseudogene 1) - Rat Genome Database

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Gene: RPL10P1 (ribosomal protein L10 pseudogene 1) Homo sapiens
Analyze
Symbol: RPL10P1
Name: ribosomal protein L10 pseudogene 1
RGD ID: 1345803
HGNC Page HGNC:10300
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL10_7_1723; RPL10P
Related Functional Gene: RPL10  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: This locus, originally represented by GeneID:54030, was annotated on the wrong strand in build GRCh37.p10 (Annotation Release 104). GeneID:54030 was discontinued and replaced by GeneID:100288252 on the correct strand. [17 Jun 2014]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,420,318 - 27,421,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,420,380 - 27,421,023 (-)EnsemblGRCh38hg38GRCh38
GRCh372128,792,637 - 28,793,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,714,413 - 27,715,354 (+)NCBINCBI36Build 36hg18NCBI36
Celera2113,975,851 - 13,976,561 (-)NCBICelera
Cytogenetic Map21q21.3NCBI
HuRef2114,196,954 - 14,197,912 (-)NCBIHuRef
CHM1_12128,354,792 - 28,355,750 (-)NCBICHM1_1
T2T-CHM13v2.02125,779,051 - 25,779,797 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:142
Interacting mature miRNAs:144
Transcripts:ENST00000447844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RPL10  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372128,792,890 - 28,793,121UniSTSGRCh37
Celera2113,976,065 - 13,976,296UniSTS
HuRef2114,197,312 - 14,197,543UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 55
Low 332 285 125 14 352 6 793 193 172 24 375 205 8 303 474
Below cutoff 1740 2198 1134 364 844 239 3025 1678 2112 220 824 1019 126 821 2046 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2127,420,380 - 27,421,023 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL10P1 COSMIC
Ensembl Genes ENSG00000217026 Ensembl, ENTREZGENE
GTEx ENSG00000217026 GTEx
HGNC ID HGNC:10300 ENTREZGENE
Human Proteome Map RPL10P1 Human Proteome Map
NCBI Gene RPL10P1 ENTREZGENE
PharmGKB PA34663 PharmGKB