ZSCAN16 (zinc finger and SCAN domain containing 16) - Rat Genome Database

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Gene: ZSCAN16 (zinc finger and SCAN domain containing 16) Homo sapiens
Analyze
Symbol: ZSCAN16
Name: zinc finger and SCAN domain containing 16
RGD ID: 1345084
HGNC Page HGNC:20813
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dJ265C24.3; FLJ22191; zinc finger and SCAN domain-containing protein 16; zinc finger protein 392; zinc finger protein 435; ZNF392; ZNF435
RGD Orthologs
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,124,609 - 28,130,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,107,689 - 28,130,082 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,092,387 - 28,097,860 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,200,366 - 28,205,836 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,200,365 - 28,205,833NCBI
Celera629,698,448 - 29,703,918 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,900,368 - 27,905,842 (+)NCBIHuRef
CHM1_1628,094,805 - 28,100,275 (+)NCBICHM1_1
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
megacolon  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14574404   PMID:14702039   PMID:15489334   PMID:16169070   PMID:16189514   PMID:16344560   PMID:16712791   PMID:17646705   PMID:18029348   PMID:18976975   PMID:21832049  
PMID:21873635   PMID:25416956   PMID:26186194   PMID:28473536   PMID:28514442   PMID:31391242   PMID:32172065   PMID:32296183   PMID:32814053   PMID:33961781  


Genomics

Comparative Map Data
ZSCAN16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,124,609 - 28,130,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,107,689 - 28,130,082 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,092,387 - 28,097,860 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,200,366 - 28,205,836 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,200,365 - 28,205,833NCBI
Celera629,698,448 - 29,703,918 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,900,368 - 27,905,842 (+)NCBIHuRef
CHM1_1628,094,805 - 28,100,275 (+)NCBICHM1_1
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBIT2T-CHM13v2.0
ZSCAN16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,730,370 - 42,736,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,731,373 - 38,743,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,916,678 - 27,922,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,590,966 - 28,596,499 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,591,001 - 28,596,499 (+)Ensemblpanpan1.1panPan2
ZSCAN16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,274,189 - 25,288,499 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,276,759 - 25,286,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,134,715 - 25,146,458 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,574,536 - 25,586,278 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,574,537 - 25,585,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,239,747 - 25,251,483 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,292,562 - 25,304,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,760,904 - 26,772,894 (+)NCBIUU_Cfam_GSD_1.0
Zscan16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,533,654 - 28,541,576 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936772243,715 - 251,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl721,950,413 - 21,965,692 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1721,950,344 - 21,966,020 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,730,858 - 23,746,518 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSCAN16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,464,628 - 44,470,366 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,464,761 - 44,469,173 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604427,759,154 - 27,764,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475624,501,886 - 24,503,692 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN16
15 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh38/hg38 6p22.2-22.1(chr6:26280579-28727313)x3 copy number gain See cases [RCV000133692] Chr6:26280579..28727313 [GRCh38]
Chr6:26280807..28695090 [GRCh37]
Chr6:26388786..28803069 [NCBI36]
Chr6:6p22.2-22.1		 uncertain significance
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p22.1(chr6:28007319-28174590)x3 copy number gain not provided [RCV000745590] Chr6:28007319..28174590 [GRCh37]
Chr6:6p22.1		 benign
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
NM_025231.3(ZSCAN16):c.958T>C (p.Tyr320His) single nucleotide variant not specified [RCV004320033] Chr6:28129861 [GRCh38]
Chr6:28097639 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.477T>A (p.His159Gln) single nucleotide variant not specified [RCV004226623] Chr6:28126872 [GRCh38]
Chr6:28094650 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.914C>G (p.Thr305Arg) single nucleotide variant not specified [RCV004122316] Chr6:28129817 [GRCh38]
Chr6:28097595 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.304C>T (p.Arg102Cys) single nucleotide variant not specified [RCV004113942] Chr6:28125747 [GRCh38]
Chr6:28093525 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.725G>C (p.Gly242Ala) single nucleotide variant not specified [RCV004311509] Chr6:28129628 [GRCh38]
Chr6:28097406 [GRCh37]
Chr6:6p22.1		 uncertain significance
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33		 likely pathogenic
NM_025231.3(ZSCAN16):c.353A>G (p.Asp118Gly) single nucleotide variant not specified [RCV004162554] Chr6:28125796 [GRCh38]
Chr6:28093574 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.1007T>C (p.Ile336Thr) single nucleotide variant not specified [RCV004208600] Chr6:28129910 [GRCh38]
Chr6:28097688 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.185T>G (p.Leu62Arg) single nucleotide variant not specified [RCV004117409] Chr6:28125628 [GRCh38]
Chr6:28093406 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.977G>A (p.Gly326Glu) single nucleotide variant not specified [RCV004128272] Chr6:28129880 [GRCh38]
Chr6:28097658 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.935G>A (p.Arg312Lys) single nucleotide variant not specified [RCV004487681] Chr6:28129838 [GRCh38]
Chr6:28097616 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.587A>G (p.Lys196Arg) single nucleotide variant not specified [RCV004084469] Chr6:28129490 [GRCh38]
Chr6:28097268 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.246C>A (p.Asp82Glu) single nucleotide variant not specified [RCV004278120] Chr6:28125689 [GRCh38]
Chr6:28093467 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.796T>C (p.Cys266Arg) single nucleotide variant not specified [RCV004262015] Chr6:28129699 [GRCh38]
Chr6:28097477 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.262C>A (p.Gln88Lys) single nucleotide variant not specified [RCV004342751] Chr6:28125705 [GRCh38]
Chr6:28093483 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.97A>C (p.Ser33Arg) single nucleotide variant not specified [RCV004336157] Chr6:28125540 [GRCh38]
Chr6:28093318 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.379G>A (p.Gly127Arg) single nucleotide variant not specified [RCV004347981] Chr6:28125822 [GRCh38]
Chr6:28093600 [GRCh37]
Chr6:6p22.1		 likely benign
NM_025231.3(ZSCAN16):c.799G>A (p.Asp267Asn) single nucleotide variant not specified [RCV004487679] Chr6:28129702 [GRCh38]
Chr6:28097480 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.501G>C (p.Gln167His) single nucleotide variant not specified [RCV004487678] Chr6:28126896 [GRCh38]
Chr6:28094674 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_025231.3(ZSCAN16):c.877A>C (p.Lys293Gln) single nucleotide variant not specified [RCV004487680] Chr6:28129780 [GRCh38]
Chr6:28097558 [GRCh37]
Chr6:6p22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:63
Interacting mature miRNAs:63
Transcripts:ENST00000340487
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH46748  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,097,643 - 28,097,768UniSTSGRCh37
Build 36628,205,622 - 28,205,747RGDNCBI36
Celera629,703,704 - 29,703,829RGD
Cytogenetic Map6p22.1UniSTS
HuRef627,905,628 - 27,905,753UniSTS
GeneMap99-GB4 RH Map6113.6UniSTS
NCBI RH Map6385.5UniSTS
WI-13567  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,097,699 - 28,097,848UniSTSGRCh37
Build 36628,205,678 - 28,205,827RGDNCBI36
Celera629,703,760 - 29,703,909RGD
Cytogenetic Map6p22.1UniSTS
HuRef627,905,684 - 27,905,833UniSTS
GeneMap99-GB4 RH Map6115.78UniSTS
Whitehead-RH Map6164.9UniSTS
NCBI RH Map6501.0UniSTS
RH41988  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,090,824 - 28,090,950UniSTSGRCh37
Build 36628,198,803 - 28,198,929RGDNCBI36
Celera629,696,885 - 29,697,011RGD
Cytogenetic Map6p22.1UniSTS
HuRef627,898,805 - 27,898,931UniSTS
GeneMap99-GB4 RH Map6114.0UniSTS
NCBI RH Map6490.5UniSTS
D6S2214  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,091,404 - 28,091,501UniSTSGRCh37
GRCh37628,091,397 - 28,091,501UniSTSGRCh37
Build 36628,199,383 - 28,199,480RGDNCBI36
Celera629,697,458 - 29,697,562UniSTS
Celera629,697,465 - 29,697,562RGD
Cytogenetic Map6p22.1UniSTS
HuRef627,899,385 - 27,899,482UniSTS
HuRef627,899,378 - 27,899,482UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 396 113 242 103 916 61 312 57 400 92 324 414 49 6 96
Low 2036 2845 1479 518 1017 402 4039 2115 3296 324 1119 1188 121 1198 2690 4
Below cutoff 25 1 1 12 1 2 16 12 2 4 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001320555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK025844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL358933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA306342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB158915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS300526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX865974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA093436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA108362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB158261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000340487   ⟹   ENSP00000366527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,124,609 - 28,130,082 (+)Ensembl
RefSeq Acc Id: ENST00000685330   ⟹   ENSP00000510203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,107,689 - 28,130,082 (+)Ensembl
RefSeq Acc Id: NM_001320555   ⟹   NP_001307484
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
CHM1_1628,094,752 - 28,100,282 (+)NCBI
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320556   ⟹   NP_001307485
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
CHM1_1628,094,752 - 28,100,282 (+)NCBI
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320557   ⟹   NP_001307486
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
CHM1_1628,094,752 - 28,100,282 (+)NCBI
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320558   ⟹   NP_001307487
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,127,572 (+)NCBI
CHM1_1628,094,752 - 28,097,768 (+)NCBI
T2T-CHM13v2.0627,994,629 - 27,997,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025231   ⟹   NP_079507
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
GRCh37628,092,334 - 28,097,864 (+)NCBI
Build 36628,200,366 - 28,205,836 (+)NCBI Archive
Celera629,698,448 - 29,703,918 (+)RGD
HuRef627,900,368 - 27,905,842 (+)RGD
CHM1_1628,094,752 - 28,100,282 (+)NCBI
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017011324   ⟹   XP_016866813
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047419378   ⟹   XP_047275334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
RefSeq Acc Id: XM_047419379   ⟹   XP_047275335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,609 - 28,130,082 (+)NCBI
RefSeq Acc Id: XM_054356469   ⟹   XP_054212444
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
RefSeq Acc Id: XM_054356470   ⟹   XP_054212445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
RefSeq Acc Id: XM_054356471   ⟹   XP_054212446
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0627,994,629 - 28,000,107 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_079507   ⟸   NM_025231
- Peptide Label: isoform a
- UniProtKB: Q9H6K2 (UniProtKB/Swiss-Prot),   Q9H4T2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307484   ⟸   NM_001320555
- Peptide Label: isoform a
- UniProtKB: Q9H6K2 (UniProtKB/Swiss-Prot),   Q9H4T2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307486   ⟸   NM_001320557
- Peptide Label: isoform c
- UniProtKB: Q9H4T2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307485   ⟸   NM_001320556
- Peptide Label: isoform b
- UniProtKB: Q9H4T2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307487   ⟸   NM_001320558
- Peptide Label: isoform d
- UniProtKB: B4DFB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016866813   ⟸   XM_017011324
- Peptide Label: isoform X1
- UniProtKB: Q9H6K2 (UniProtKB/Swiss-Prot),   Q9H4T2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000366527   ⟸   ENST00000340487
RefSeq Acc Id: ENSP00000510203   ⟸   ENST00000685330
RefSeq Acc Id: XP_047275334   ⟸   XM_047419378
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047275335   ⟸   XM_047419379
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054212445   ⟸   XM_054356470
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054212444   ⟸   XM_054356469
- Peptide Label: isoform X1
- UniProtKB: Q9H6K2 (UniProtKB/Swiss-Prot),   Q9H4T2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054212446   ⟸   XM_054356471
- Peptide Label: isoform X2
Protein Domains
SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H4T2-F1-model_v2 AlphaFold Q9H4T2 1-348 view protein structure

Promoters
RGD ID:6872302
Promoter ID:EPDNEW_H9315
Type:initiation region
Name:ZSCAN16_1
Description:zinc finger and SCAN domain containing 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,124,622 - 28,124,682EPDNEW
RGD ID:6805053
Promoter ID:HG_KWN:52667
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000040177
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,200,126 - 28,200,626 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC ZSCAN16 COSMIC
Ensembl Genes ENSG00000196812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000340487 ENTREZGENE
  ENST00000340487.5 UniProtKB/Swiss-Prot
  ENST00000685330.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000196812 GTEx
HGNC ID HGNC:20813 ENTREZGENE
Human Proteome Map ZSCAN16 Human Proteome Map
InterPro SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:80345 UniProtKB/Swiss-Prot
NCBI Gene 80345 ENTREZGENE
OMIM 618544 OMIM
PANTHER PROTEIN ZBED8-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA162410958 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot
UniProt B4DFB7 ENTREZGENE, UniProtKB/TrEMBL
  Q9H4T2 ENTREZGENE
  Q9H6K2 ENTREZGENE
  ZSC16_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q9H6K2 UniProtKB/Swiss-Prot