ZNF252P (zinc finger protein 252, pseudogene) - Rat Genome Database

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Gene: ZNF252P (zinc finger protein 252, pseudogene) Homo sapiens
Analyze
Symbol: ZNF252P
Name: zinc finger protein 252, pseudogene
RGD ID: 1345050
HGNC Page HGNC:13046
Description: INTERACTS WITH (-)-epigallocatechin 3-gallate; aristolochic acid A; bisphenol A
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ZNF252
Related Functional Gene: ZKSCAN7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,973,589 - 145,002,899 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,973,589 - 145,002,912 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,976,190 - 144,999,723 (-)EnsemblGRCh38hg38GRCh38
GRCh378146,198,975 - 146,228,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368146,169,779 - 146,196,311 (-)NCBINCBI36Build 36hg18NCBI36
Celera8142,376,018 - 142,405,321 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8141,314,743 - 141,344,033 (-)NCBIHuRef
CHM1_18146,236,916 - 146,266,219 (-)NCBICHM1_1
T2T-CHM13v2.08146,148,751 - 146,178,044 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:16344560  


Genomics

Variants

.
Variants in ZNF252P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1138
Count of miRNA genes:745
Interacting mature miRNAs:858
Transcripts:ENST00000355436, ENST00000426361, ENST00000427606, ENST00000527222, ENST00000528327, ENST00000528392, ENST00000529315, ENST00000534037, ENST00000592792
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
A002E08  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,598,234 - 75,598,449UniSTSGRCh37
GRCh378146,224,008 - 146,224,221UniSTSGRCh37
Build 368146,194,812 - 146,195,025RGDNCBI36
Celera1455,635,858 - 55,636,073UniSTS
Celera8142,401,044 - 142,401,257RGD
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map8q24.3UniSTS
HuRef1455,766,385 - 55,766,600UniSTS
HuRef8141,339,758 - 141,339,971UniSTS
GeneMap99-GB4 RH Map14201.19UniSTS
Whitehead-RH Map14268.5UniSTS
RH65120  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378146,199,184 - 146,199,338UniSTSGRCh37
Build 368146,169,988 - 146,170,142RGDNCBI36
Celera8142,376,227 - 142,376,381RGD
Cytogenetic Map8q24.3UniSTS
HuRef8141,314,952 - 141,315,106UniSTS
RH44072  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378146,221,326 - 146,221,485UniSTSGRCh37
GRCh371475,601,032 - 75,601,191UniSTSGRCh37
Build 368146,192,130 - 146,192,289RGDNCBI36
Celera8142,398,362 - 142,398,521RGD
Celera1455,638,657 - 55,638,816UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map14q24.3UniSTS
HuRef8141,337,075 - 141,337,234UniSTS
HuRef1455,769,184 - 55,769,343UniSTS
A002P02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,601,000 - 75,601,131UniSTSGRCh37
GRCh378146,221,386 - 146,221,517UniSTSGRCh37
Build 368146,192,190 - 146,192,321RGDNCBI36
Celera1455,638,625 - 55,638,756UniSTS
Celera8142,398,422 - 142,398,553RGD
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map8q24.3UniSTS
HuRef1455,769,152 - 55,769,283UniSTS
HuRef8141,337,135 - 141,337,266UniSTS
GeneMap99-GB4 RH Map14201.29UniSTS
RH36905  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map3q27-q28UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map3q26.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map3q12.2-q12.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q12-q13.1UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map9q31.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map10q21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map10q24.1UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map10q25-q26UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map16q22.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 181 12 180 51 139 52 73 65 210 104 238 289 9 1 4 13 1
Low 2258 2819 1546 573 1705 413 4284 2078 3524 314 1222 1324 166 1200 2775 6 1
Below cutoff 160 107 54 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_023392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF086559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF235103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI254488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX478460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA311045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF145574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA489661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB233439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000426361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,973,589 - 145,002,895 (-)Ensembl
RefSeq Acc Id: ENST00000427606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,685 - 144,996,162 (-)Ensembl
RefSeq Acc Id: ENST00000527222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,977,752 - 145,002,895 (-)Ensembl
RefSeq Acc Id: ENST00000528327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,997,982 - 145,002,850 (-)Ensembl
RefSeq Acc Id: ENST00000528392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,951 - 145,002,912 (-)Ensembl
RefSeq Acc Id: ENST00000529315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,996,452 - 145,002,881 (-)Ensembl
RefSeq Acc Id: ENST00000534037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,995,718 - 145,002,895 (-)Ensembl
RefSeq Acc Id: ENST00000592792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,190 - 144,999,723 (-)Ensembl
RefSeq Acc Id: ENST00000689624
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,952 - 145,002,911 (-)Ensembl
RefSeq Acc Id: ENST00000690265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,948 - 145,002,894 (-)Ensembl
RefSeq Acc Id: ENST00000690545
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,976,939 - 145,002,904 (-)Ensembl
RefSeq Acc Id: ENST00000700810
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,977,759 - 145,002,829 (-)Ensembl
RefSeq Acc Id: ENST00000701338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,977,756 - 145,002,846 (-)Ensembl
RefSeq Acc Id: ENST00000702070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,977,793 - 145,002,837 (-)Ensembl
RefSeq Acc Id: NR_023392
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388144,973,589 - 145,002,899 (-)NCBI
GRCh378146,198,975 - 146,228,285 (-)RGD
Celera8142,376,018 - 142,405,321 (-)RGD
HuRef8141,314,743 - 141,344,033 (-)ENTREZGENE
CHM1_18146,236,916 - 146,266,219 (-)NCBI
T2T-CHM13v2.08146,148,751 - 146,178,044 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG57870 (Get FASTA)   NCBI Sequence Viewer  
  BAG59065 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC ZNF252P COSMIC
Ensembl Genes ENSG00000196922 Ensembl
  ENSG00000291080 Ensembl
GTEx ENSG00000196922 GTEx
  ENSG00000291080 GTEx
HGNC ID HGNC:13046 ENTREZGENE
Human Proteome Map ZNF252P Human Proteome Map
NCBI Gene 286101 ENTREZGENE
PharmGKB PA37624 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-04-24 ZNF252P  zinc finger protein 252, pseudogene  ZNF252  zinc finger protein 252  Symbol and/or name change 5135510 APPROVED