SFTA1P (surfactant associated 1, lncRNA) - Rat Genome Database

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Gene: SFTA1P (surfactant associated 1, lncRNA) Homo sapiens
Analyze
Symbol: SFTA1P
Name: surfactant associated 1, lncRNA
RGD ID: 1344361
HGNC Page HGNC:18383
Description: INTERACTS WITH 4,4'-sulfonyldiphenol; aflatoxin B1; aristolochic acid A
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: PROVISIONAL
Previously known as: RP1-186E20.2; SFTPF; surfactant associated 1, pseudogene
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381010,784,439 - 10,794,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1010,784,437 - 10,795,047 (-)EnsemblGRCh38hg38GRCh38
GRCh371010,826,402 - 10,836,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1010,754,762 - 10,765,237 (-)NCBICelera
Cytogenetic Map10p14NCBI
HuRef1010,745,523 - 10,756,049 (-)NCBIHuRef
CHM1_11010,826,485 - 10,836,989 (-)NCBICHM1_1
T2T-CHM13v2.01010,794,698 - 10,805,204 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23064961   PMID:25307233   PMID:28118064   PMID:28231733   PMID:29523596   PMID:32825934   PMID:36344495  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:458
Count of miRNA genes:121
Interacting mature miRNAs:123
Transcripts:ENST00000415590, ENST00000434919, ENST00000446372, ENST00000602763
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D10S2393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371010,826,420 - 10,826,555UniSTSGRCh37
Build 361010,866,426 - 10,866,561RGDNCBI36
Celera1010,754,780 - 10,754,915RGD
Cytogenetic Map10p14UniSTS
HuRef1010,745,541 - 10,745,676UniSTS
Stanford-G3 RH Map10516.0UniSTS
NCBI RH Map10182.9UniSTS
GeneMap99-G3 RH Map10516.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 60 19 26 3 16 4 23 10 16 30 50 723 6 18
Low 604 1463 719 135 216 93 1533 147 2791 133 283 600 46 1061 715
Below cutoff 1132 827 492 204 316 98 1876 1269 732 116 630 177 108 122 1337 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000415590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,438 - 10,794,980 (-)Ensembl
RefSeq Acc Id: ENST00000434919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,438 - 10,794,980 (-)Ensembl
RefSeq Acc Id: ENST00000446372
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,794,929 (-)Ensembl
RefSeq Acc Id: ENST00000602763
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,794,993 (-)Ensembl
RefSeq Acc Id: ENST00000634899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,789,081 (-)Ensembl
RefSeq Acc Id: ENST00000652890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,593 - 10,794,980 (-)Ensembl
RefSeq Acc Id: ENST00000653216
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,794,917 (-)Ensembl
RefSeq Acc Id: ENST00000656654
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,792,891 (-)Ensembl
RefSeq Acc Id: ENST00000660024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,795,047 (-)Ensembl
RefSeq Acc Id: ENST00000663743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,439 - 10,792,724 (-)Ensembl
RefSeq Acc Id: ENST00000665724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,792,597 (-)Ensembl
RefSeq Acc Id: ENST00000667544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1010,784,437 - 10,794,980 (-)Ensembl
RefSeq Acc Id: NR_027082
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381010,784,439 - 10,794,914 (-)NCBI
GRCh371010,826,402 - 10,836,877 (-)RGD
Celera1010,754,762 - 10,765,237 (-)RGD
HuRef1010,745,523 - 10,756,049 (-)ENTREZGENE
CHM1_11010,826,485 - 10,836,989 (-)NCBI
T2T-CHM13v2.01010,794,698 - 10,805,204 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SFTA1P COSMIC
Ensembl Genes ENSG00000225383 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000446372 ENTREZGENE
GTEx ENSG00000225383 GTEx
HGNC ID HGNC:18383 ENTREZGENE
Human Proteome Map SFTA1P Human Proteome Map
NCBI Gene 207107 ENTREZGENE
PharmGKB PA38322 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-18 SFTA1P  surfactant associated 1, lncRNA  SFTA1P  surfactant associated 1, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 SFTA1P  surfactant associated 1, pseudogene  SFTA1P  surfactant associated 1 (pseudogene)  Symbol and/or name change 5135510 APPROVED