RPL13AP5 (ribosomal protein L13a pseudogene 5) - Rat Genome Database

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Gene: RPL13AP5 (ribosomal protein L13a pseudogene 5) Homo sapiens
Analyze
Symbol: RPL13AP5
Name: ribosomal protein L13a pseudogene 5
RGD ID: 1343517
HGNC Page HGNC:23736
Description: INTERACTS WITH 17beta-estradiol; antimycin A; arsane
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: bA196N24.2; RPL13A_8_1086
Related Functional Gene: RPL13A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381096,750,266 - 96,750,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1096,750,288 - 96,750,899 (+)EnsemblGRCh38hg38GRCh38
GRCh371098,510,023 - 98,510,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361098,486,671 - 98,500,716 (+)NCBINCBI36Build 36hg18NCBI36
Celera1092,252,400 - 92,253,057 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,139,492 - 92,140,149 (+)NCBIHuRef
CHM1_11098,791,857 - 98,792,514 (+)NCBICHM1_1
T2T-CHM13v2.01097,631,500 - 97,632,157 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENST00000270634, ENST00000439189
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D19S1002  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10q24.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q22.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1
Medium 2335 2626 1523 438 1663 278 4225 1966 2748 267 1249 1448 162 1204 2776 2
Low 97 357 185 170 283 172 130 226 959 147 197 157 8 12 2
Below cutoff 1 14 13 2 13 1 4 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1096,750,288 - 96,750,899 (+)Ensembl
RefSeq Acc Id: NR_026712
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381096,750,266 - 96,750,923 (+)NCBI
GRCh371098,510,023 - 98,510,680 (+)RGD
Celera1092,252,400 - 92,253,057 (+)RGD
HuRef1092,139,492 - 92,140,149 (+)ENTREZGENE
CHM1_11098,791,857 - 98,792,514 (+)NCBI
T2T-CHM13v2.01097,631,500 - 97,632,157 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC RPL13AP5 COSMIC
Ensembl Genes ENSG00000236552 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000439189 ENTREZGENE
GTEx ENSG00000236552 GTEx
HGNC ID HGNC:23736 ENTREZGENE
Human Proteome Map RPL13AP5 Human Proteome Map
NCBI Gene 728658 ENTREZGENE
PharmGKB PA134990691 PharmGKB