PRSS29P (serine protease 29, pseudogene) - Rat Genome Database

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Gene: PRSS29P (serine protease 29, pseudogene) Homo sapiens
Analyze
Symbol: PRSS29P
Name: serine protease 29, pseudogene
RGD ID: 1343422
HGNC Page HGNC:17542
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within blastocyst hatching and embryo implantation. Predicted to be located in extracellular region. Predicted to be active in extracellular space.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ISP2; protease, serine 29, pseudogene
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,261,003 - 1,264,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,261,313 - 1,263,212 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,311,004 - 1,314,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,251,005 - 1,254,006 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,525,335 - 1,528,339 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,239,925 - 1,242,931 (-)NCBIHuRef
CHM1_1161,310,165 - 1,313,165 (-)NCBICHM1_1
T2T-CHM13v2.0161,277,044 - 1,280,044 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14702039   PMID:15616553   PMID:17947681   PMID:21873635  


Genomics

Comparative Map Data
PRSS29P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,261,003 - 1,264,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,261,313 - 1,263,212 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,311,004 - 1,314,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,251,005 - 1,254,006 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,525,335 - 1,528,339 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,239,925 - 1,242,931 (-)NCBIHuRef
CHM1_1161,310,165 - 1,313,165 (-)NCBICHM1_1
T2T-CHM13v2.0161,277,044 - 1,280,044 (-)NCBIT2T-CHM13v2.0
Prss29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,537,628 - 25,541,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,537,620 - 25,541,659 (+)EnsemblGRCm39 Ensembl
GRCm381725,318,654 - 25,322,684 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,318,654 - 25,322,684 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,455,599 - 25,459,629 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,047,883 - 25,050,280 (+)NCBIMGSCv36mm8
Celera1725,847,250 - 25,851,234 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Prss29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,841,808 - 14,845,531 (+)NCBIGRCr8
mRatBN7.21014,337,315 - 14,341,038 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,339,036 - 14,341,038 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,678,286 - 14,681,877 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,678,278 - 14,681,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,496,269 - 14,499,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,569,722 - 14,571,558 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1014,009,512 - 14,013,103 (+)NCBICelera
Cytogenetic Map10q12NCBI

Variants

.
Variants in PRSS29P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:715
Count of miRNA genes:454
Interacting mature miRNAs:487
Transcripts:ENST00000440800, ENST00000561760, ENST00000568091
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 1 2 1 14 1 4 1 1 33 14 1
Below cutoff 990 857 554 129 505 67 1815 778 1342 75 724 522 64 453 1148 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000440800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl161,261,313 - 1,263,212 (-)Ensembl
RefSeq Acc Id: ENST00000568091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl161,260,952 - 1,263,845 (-)Ensembl
Protein Sequences
GenBank Protein A6NIE9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
Peptidase S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6NIE9-F1-model_v2 AlphaFold A6NIE9 1-313 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17542 AgrOrtholog
COSMIC PRSS29P COSMIC
Ensembl Genes ENSG00000196364 Ensembl
  ENSG00000290756 ENTREZGENE
Gene3D-CATH 2.40.10.10 UniProtKB/Swiss-Prot
GTEx ENSG00000196364 GTEx
  ENSG00000290756 GTEx
HGNC ID HGNC:17542 ENTREZGENE
Human Proteome Map PRSS29P Human Proteome Map
InterPro Peptidase_S1_PA UniProtKB/Swiss-Prot
  Peptidase_S1_PA_chymotrypsin UniProtKB/Swiss-Prot
  Peptidase_S1A UniProtKB/Swiss-Prot
  Trypsin_dom UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
NCBI Gene 123787 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEASE SERINE UniProtKB/Swiss-Prot
  TRYPTASE DELTA 1 UniProtKB/Swiss-Prot
Pfam Trypsin UniProtKB/Swiss-Prot
PharmGKB PA134869388 PharmGKB
PRINTS CHYMOTRYPSIN UniProtKB/Swiss-Prot
PROSITE TRYPSIN_DOM UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
SMART Tryp_SPc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50494 UniProtKB/Swiss-Prot
UniProt A6NIE9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-16 PRSS29P  serine protease 29, pseudogene    protease, serine 29, pseudogene  Symbol and/or name change 5135510 APPROVED
2015-11-24 PRSS29P  protease, serine 29, pseudogene    protease, serine, 29, pseudogene  Symbol and/or name change 5135510 APPROVED
2012-09-19 PRSS29P  protease, serine, 29, pseudogene  PRSS29P  protease, serine, 29 pseudogene  Symbol and/or name change 5135510 APPROVED