GAL3ST3 (galactose-3-O-sulfotransferase 3)

Gene: GAL3ST3 (galactose-3-O-sulfotransferase 3) Homo sapiens

Analyze

Symbol:

GAL3ST3

Name:

galactose-3-O-sulfotransferase 3

RGD ID:

1343263

HGNC Page

HGNC:24144

Description:

Enables galactose 3-O-sulfotransferase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to be located in Golgi cisterna membrane.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

beta-galactose-3-O-sulfotransferase 3; gal-beta-1, 3-GalNAc 3'-sulfotransferase 3; GAL3ST-3; GAL3ST2; galactose 3'-sulfotransferase; galbeta1-3GalNAc 3'-sulfotransferase 3; MGC142112; MGC142114

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,040,765 - 66,049,161 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,040,765 - 66,049,161 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,808,236 - 65,816,632 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,564,812 - 65,573,227 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	65,566,028 - 65,573,227	NCBI
Celera	11	63,132,938 - 63,141,353 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	62,134,133 - 62,142,548 (-)	NCBI		HuRef
CHM1_1	11	65,692,368 - 65,700,783 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,034,897 - 66,043,293 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (IAGP)

autism spectrum disorder (EXP)

autosomal recessive cutis laxa type IB (IAGP)

Bardet-Biedl syndrome (IAGP)

glycogen storage disease V (IAGP)

intellectual disability (IAGP)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (EXP)

amiodarone (EXP)

aristolochic acid A (EXP)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

Cuprizon (ISO)

gentamycin (ISO)

N,N-diethyl-m-toluamide (ISO)

N-ethyl-N-nitrosourea (ISO)

permethrin (ISO)

sunitinib (EXP)

tributylstannane (ISO)

triptonide (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycolipid biosynthetic process (IEA)

monosaccharide metabolic process (NAS)

oligosaccharide metabolic process (NAS)

poly-N-acetyllactosamine metabolic process (NAS)

proteoglycan biosynthetic process (NAS)

sulfur compound metabolic process (NAS)

Cellular Component

Golgi apparatus (IEA)

Golgi cisterna membrane (IEA)

membrane (IEA,NAS)

Molecular Function

3'-phosphoadenosine 5'-phosphosulfate binding (NAS)

carbohydrate binding (NAS)

galactose 3-O-sulfotransferase activity (IBA,IDA,IMP)

galactosylceramide sulfotransferase activity (IEA)

protein binding (IPI)

proteoglycan sulfotransferase activity (NAS)

transferase activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Esophageal atresia (IAGP)

Intellectual disability (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	GOAs Human GO annotations	GOA_HUMAN data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10815989	PMID:11323440	PMID:11333265	PMID:11356829	PMID:12477932	PMID:14701868	PMID:15489334	PMID:21873635	PMID:21926972	PMID:24927181	PMID:32296183

Genomics

Comparative Map Data

GAL3ST3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,040,765 - 66,049,161 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,040,765 - 66,049,161 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,808,236 - 65,816,632 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,564,812 - 65,573,227 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	65,566,028 - 65,573,227	NCBI
Celera	11	63,132,938 - 63,141,353 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	62,134,133 - 62,142,548 (-)	NCBI		HuRef
CHM1_1	11	65,692,368 - 65,700,783 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,034,897 - 66,043,293 (-)	NCBI		T2T-CHM13v2.0

Gal3st3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,348,359 - 5,358,767 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,348,359 - 5,358,766 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,298,331 - 5,308,739 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,298,331 - 5,308,738 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,298,331 - 5,308,739 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,298,341 - 5,308,739 (+)	NCBI		MGSCv36	mm8
Celera	19	5,167,423 - 5,177,824 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.29	NCBI

Gal3st3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,022,989 - 212,032,802 (+)	NCBI		GRCr8
mRatBN7.2	1	202,593,635 - 202,603,446 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	202,593,692 - 202,603,445 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	210,946,452 - 210,956,330 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,039,065 - 218,048,869 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	210,730,107 - 210,739,918 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	220,668,544 - 220,678,300 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	220,668,544 - 220,678,299 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	227,598,280 - 227,608,036 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,928,648 - 207,938,404 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,132,469 - 200,142,225 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Gal3st3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,263,468 - 19,267,029 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,259,551 - 19,267,600 (+)	NCBI	ChiLan1.0	ChiLan1.0

GAL3ST3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	67,274,597 - 67,281,940 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	68,317,452 - 68,324,797 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	61,406,398 - 61,413,733 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	64,732,001 - 64,740,512 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

GAL3ST3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,215,280 - 51,222,962 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	51,219,156 - 51,222,418 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	49,823,836 - 49,831,505 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,253,675 - 52,261,345 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,253,665 - 52,261,339 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,353,667 - 51,361,341 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	50,927,905 - 50,935,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	51,717,891 - 51,725,566 (+)	NCBI		UU_Cfam_GSD_1.0

Gal3st3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,055,656 - 7,070,201 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	3,498,005 - 3,504,901 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	3,498,011 - 3,512,550 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GAL3ST3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,297,855 - 6,306,198 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,297,797 - 6,306,200 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,369,781 - 5,378,222 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GAL3ST3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	8,210,003 - 8,217,503 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	8,214,007 - 8,217,477 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	105,489,977 - 105,499,172 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gal3st3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	20,342,446 - 20,350,842 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	20,342,925 - 20,350,892 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GAL3ST3
35 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 11q13.1-13.2(chr11:65741431-67705669)x1	copy number loss	See cases [RCV000142881]	Chr11:65741431..67705669 [GRCh38] Chr11:65508902..67473140 [GRCh37] Chr11:65265478..67229716 [NCBI36] Chr11:11q13.1-13.2	pathogenic
GRCh37/hg19 11q13.1-13.2(chr11:64501919-67129258)x3	copy number gain	See cases [RCV000511632]	Chr11:64501919..67129258 [GRCh37] Chr11:11q13.1-13.2	likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)	copy number gain	See cases [RCV000511729]	Chr11:230616..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3	copy number gain	See cases [RCV000510881]	Chr11:230616..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
NM_033036.3(GAL3ST3):c.772G>C (p.Asp258His)	single nucleotide variant	not specified [RCV004316968]	Chr11:66043031 [GRCh38] Chr11:65810502 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1199A>C (p.Lys400Thr)	single nucleotide variant	not specified [RCV004303250]	Chr11:66042604 [GRCh38] Chr11:65810075 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.974G>A (p.Arg325His)	single nucleotide variant	not specified [RCV004325131]	Chr11:66042829 [GRCh38] Chr11:65810300 [GRCh37] Chr11:11q13.1	uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3	copy number gain	not provided [RCV000737348]	Chr11:198510..134934063 [GRCh37] Chr11:11p15.5-q25	pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3	copy number gain	not provided [RCV000749874]	Chr11:70864..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
NM_033036.3(GAL3ST3):c.126-60C>A	single nucleotide variant	not provided [RCV001690476]	Chr11:66043737 [GRCh38] Chr11:65811208 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.*215G>A	single nucleotide variant	not provided [RCV001680791]	Chr11:66042292 [GRCh38] Chr11:65809763 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.125+262_125+264del	deletion	not provided [RCV001645579]	Chr11:66045027..66045029 [GRCh38] Chr11:65812498..65812500 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.525A>G (p.Val175=)	single nucleotide variant	not provided [RCV001681983]	Chr11:66043278 [GRCh38] Chr11:65810749 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.234G>C (p.Thr78=)	single nucleotide variant	not provided [RCV000906401]	Chr11:66043569 [GRCh38] Chr11:65811040 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.740C>G (p.Ser247Trp)	single nucleotide variant	Esophageal atresia [RCV000984649]	Chr11:66043063 [GRCh38] Chr11:65810534 [GRCh37] Chr11:11q13.1	uncertain significance
GRCh37/hg19 11q13.1-13.2(chr11:65138976-67574402)	copy number gain	not provided [RCV000767601]	Chr11:65138976..67574402 [GRCh37] Chr11:11q13.1-13.2	pathogenic
NC_000011.9:g.(?_65633902)_(66115026_?)dup	duplication	Cutis laxa, autosomal recessive, type 1B [RCV000798155]	Chr11:65866431..66347555 [GRCh38] Chr11:65633902..66115026 [GRCh37] Chr11:11q13.1-13.2	uncertain significance
NM_033036.3(GAL3ST3):c.452T>G (p.Leu151Arg)	single nucleotide variant	not specified [RCV004294876]	Chr11:66043351 [GRCh38] Chr11:65810822 [GRCh37] Chr11:11q13.1	uncertain significance
NC_000011.9:g.(?_64973914)_(70052579_?)dup	duplication	Aicardi-Goutieres syndrome 3 [RCV003113322]\|FADD-related immunodeficiency [RCV003107753]	Chr11:64973914..70052579 [GRCh37] Chr11:11q13.1-13.3	uncertain significance
NM_033036.3(GAL3ST3):c.125+275G>A	single nucleotide variant	not provided [RCV001660971]	Chr11:66045016 [GRCh38] Chr11:65812487 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.1065G>A (p.Pro355=)	single nucleotide variant	not provided [RCV001717717]	Chr11:66042738 [GRCh38] Chr11:65810209 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.405G>A (p.Ala135=)	single nucleotide variant	not provided [RCV001688838]	Chr11:66043398 [GRCh38] Chr11:65810869 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.1205G>A (p.Arg402Gln)	single nucleotide variant	not specified [RCV004289399]	Chr11:66042598 [GRCh38] Chr11:65810069 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.*103G>T	single nucleotide variant	not provided [RCV001596738]	Chr11:66042404 [GRCh38] Chr11:65809875 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.125+153T>C	single nucleotide variant	not provided [RCV001637966]	Chr11:66045138 [GRCh38] Chr11:65812609 [GRCh37] Chr11:11q13.1	benign
NM_033036.3(GAL3ST3):c.1035C>T (p.Ala345=)	single nucleotide variant	not provided [RCV001690786]	Chr11:66042768 [GRCh38] Chr11:65810239 [GRCh37] Chr11:11q13.1	benign
Single allele	deletion	Intellectual disability [RCV001293382]	Chr11:118359328..118372573 [GRCh37] Chr11:11p15.3-q23.3	pathogenic
NM_033036.3(GAL3ST3):c.1296A>G (p.Ter432Trp)	single nucleotide variant	not provided [RCV001812285]	Chr11:66042507 [GRCh38] Chr11:65809978 [GRCh37] Chr11:11q13.1	uncertain significance
NC_000011.9:g.(?_59596957)_(68707199_?)dup	duplication	Familial temporal lobe epilepsy 8 [RCV001372442]	Chr11:59596957..68707199 [GRCh37] Chr11:11q12.1-13.3	uncertain significance
NC_000011.9:g.(?_65633902)_(66115026_?)dup	duplication	Autosomal recessive cutis laxa type 1B [RCV001305354]	Chr11:65633902..66115026 [GRCh37] Chr11:11q13.1-13.2	uncertain significance
NM_033036.3(GAL3ST3):c.1229A>C (p.Glu410Ala)	single nucleotide variant	not provided [RCV001536770]	Chr11:66042574 [GRCh38] Chr11:65810045 [GRCh37] Chr11:11q13.1	benign
GRCh37/hg19 11q13.1-13.2(chr11:64935724-66405514)	copy number loss	not specified [RCV002052930]	Chr11:64935724..66405514 [GRCh37] Chr11:11q13.1-13.2	uncertain significance
NC_000011.9:g.(?_64522783)_(66283694_?)del	deletion	Bardet-Biedl syndrome [RCV002014493]\|Glycogen storage disease, type V [RCV002004587]	Chr11:64522783..66283694 [GRCh37] Chr11:11q13.1-13.2	pathogenic
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3	copy number gain	MISSED ABORTION [RCV002282973]	Chr11:32799481..134938470 [GRCh37] Chr11:11p13-q25	pathogenic
NM_033036.3(GAL3ST3):c.49C>G (p.Arg17Gly)	single nucleotide variant	not specified [RCV004321818]	Chr11:66045367 [GRCh38] Chr11:65812838 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.952G>A (p.Glu318Lys)	single nucleotide variant	not specified [RCV004125836]	Chr11:66042851 [GRCh38] Chr11:65810322 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.685C>G (p.Arg229Gly)	single nucleotide variant	not specified [RCV004105798]	Chr11:66043118 [GRCh38] Chr11:65810589 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.920G>T (p.Arg307Leu)	single nucleotide variant	not specified [RCV004095311]	Chr11:66042883 [GRCh38] Chr11:65810354 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.712G>A (p.Val238Ile)	single nucleotide variant	not specified [RCV004117662]	Chr11:66043091 [GRCh38] Chr11:65810562 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1015G>A (p.Glu339Lys)	single nucleotide variant	not specified [RCV004244480]	Chr11:66042788 [GRCh38] Chr11:65810259 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.379G>C (p.Ala127Pro)	single nucleotide variant	not specified [RCV004157439]	Chr11:66043424 [GRCh38] Chr11:65810895 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.77G>C (p.Gly26Ala)	single nucleotide variant	not specified [RCV004087641]	Chr11:66045339 [GRCh38] Chr11:65812810 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.531C>A (p.Asn177Lys)	single nucleotide variant	not specified [RCV004092221]	Chr11:66043272 [GRCh38] Chr11:65810743 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.254G>A (p.Arg85His)	single nucleotide variant	not specified [RCV004112985]	Chr11:66043549 [GRCh38] Chr11:65811020 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.884C>G (p.Ala295Gly)	single nucleotide variant	not specified [RCV004160375]	Chr11:66042919 [GRCh38] Chr11:65810390 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1246C>T (p.Pro416Ser)	single nucleotide variant	not specified [RCV004276627]	Chr11:66042557 [GRCh38] Chr11:65810028 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.489C>G (p.Ser163Arg)	single nucleotide variant	not specified [RCV004267209]	Chr11:66043314 [GRCh38] Chr11:65810785 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.937G>C (p.Gly313Arg)	single nucleotide variant	not specified [RCV004280291]	Chr11:66042866 [GRCh38] Chr11:65810337 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1193A>C (p.Lys398Thr)	single nucleotide variant	not specified [RCV004299150]	Chr11:66042610 [GRCh38] Chr11:65810081 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1226C>T (p.Pro409Leu)	single nucleotide variant	not specified [RCV004360220]	Chr11:66042577 [GRCh38] Chr11:65810048 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.835A>G (p.Ile279Val)	single nucleotide variant	not specified [RCV004363930]	Chr11:66042968 [GRCh38] Chr11:65810439 [GRCh37] Chr11:11q13.1	uncertain significance
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3	copy number gain	not provided [RCV003484842]	Chr11:59923608..76272324 [GRCh37] Chr11:11q12.2-13.5	pathogenic
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3	copy number gain	not specified [RCV003986944]	Chr11:56895955..69295402 [GRCh37] Chr11:11q12.1-13.3	likely pathogenic
NM_033036.3(GAL3ST3):c.1100A>G (p.Tyr367Cys)	single nucleotide variant	not specified [RCV004390311]	Chr11:66042703 [GRCh38] Chr11:65810174 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.19C>A (p.Arg7Ser)	single nucleotide variant	not specified [RCV004390315]	Chr11:66045397 [GRCh38] Chr11:65812868 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.57A>T (p.Lys19Asn)	single nucleotide variant	not specified [RCV004390320]	Chr11:66045359 [GRCh38] Chr11:65812830 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.427C>T (p.Pro143Ser)	single nucleotide variant	not specified [RCV004390318]	Chr11:66043376 [GRCh38] Chr11:65810847 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1231C>A (p.Pro411Thr)	single nucleotide variant	not specified [RCV004390314]	Chr11:66042572 [GRCh38] Chr11:65810043 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.353C>T (p.Pro118Leu)	single nucleotide variant	not specified [RCV004390317]	Chr11:66043450 [GRCh38] Chr11:65810921 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.545C>T (p.Ala182Val)	single nucleotide variant	not specified [RCV004390319]	Chr11:66043258 [GRCh38] Chr11:65810729 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.895G>T (p.Asp299Tyr)	single nucleotide variant	not specified [RCV004390323]	Chr11:66042908 [GRCh38] Chr11:65810379 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1162G>A (p.Glu388Lys)	single nucleotide variant	not specified [RCV004390312]	Chr11:66042641 [GRCh38] Chr11:65810112 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.1210G>A (p.Gly404Ser)	single nucleotide variant	not specified [RCV004390313]	Chr11:66042593 [GRCh38] Chr11:65810064 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.266G>A (p.Arg89His)	single nucleotide variant	not specified [RCV004390316]	Chr11:66043537 [GRCh38] Chr11:65811008 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.697G>A (p.Glu233Lys)	single nucleotide variant	not specified [RCV004390321]	Chr11:66043106 [GRCh38] Chr11:65810577 [GRCh37] Chr11:11q13.1	uncertain significance
NM_033036.3(GAL3ST3):c.818G>A (p.Ser273Asn)	single nucleotide variant	not specified [RCV004390322]	Chr11:66042985 [GRCh38] Chr11:65810456 [GRCh37] Chr11:11q13.1	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	984
Count of miRNA genes:	525
Interacting mature miRNAs:	584
Transcripts:	ENST00000312006, ENST00000527048, ENST00000527878
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

D11S4064

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	65,808,305 - 65,808,379	UniSTS	GRCh37
Build 36	11	65,564,881 - 65,564,955	RGD	NCBI36
Celera	11	63,133,007 - 63,133,081	RGD
Cytogenetic Map	11	q13.1	UniSTS
HuRef	11	62,134,202 - 62,134,276	UniSTS

D11S4418

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	65,808,280 - 65,808,504	UniSTS	GRCh37
Build 36	11	65,564,856 - 65,565,080	RGD	NCBI36
Celera	11	63,132,982 - 63,133,206	RGD
Cytogenetic Map	11	q13.1	UniSTS
HuRef	11	62,134,177 - 62,134,401	UniSTS
GeneMap99-GB4 RH Map	11	247.67	UniSTS
Whitehead-RH Map	11	336.2	UniSTS
NCBI RH Map	11	573.2	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

High

Medium

759

181

1173

693

Low

669

1597

243

582

981

1910

164

866

542

Below cutoff

1362

1122

387

285

1155

172

3185

1080

592

101

369

561

119

921

2107

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_033036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017018519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054370370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB053232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AP006287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY026481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC113552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC113554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM673570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000312006 ⟹ ENSP00000308591

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	66,040,765 - 66,049,161 (-)	Ensembl

RefSeq Acc Id:

ENST00000527048

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	66,044,991 - 66,049,151 (-)	Ensembl

RefSeq Acc Id:

ENST00000527878 ⟹ ENSP00000434829

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	66,042,364 - 66,045,575 (-)	Ensembl

RefSeq Acc Id:

NM_033036 ⟹ NP_149025

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	66,040,765 - 66,049,161 (-)	NCBI
GRCh37	11	65,808,236 - 65,816,651 (-)	RGD
Build 36	11	65,564,812 - 65,573,227 (-)	NCBI Archive
Celera	11	63,132,938 - 63,141,353 (-)	RGD
HuRef	11	62,134,133 - 62,142,548 (-)	ENTREZGENE
CHM1_1	11	65,692,368 - 65,700,783 (-)	NCBI
T2T-CHM13v2.0	11	66,034,897 - 66,043,293 (-)	NCBI

Sequence:

show sequence

GATCCCATCCAGGCGCTGAGAGGCAAGCCACCGGCACTCGGCGCGCAGGGCCCCGGGCACCCTC
GGACCCCGTGCGGATTTCGAGACAAGGGTCCAGAGATAGCGGCGGCCGCCCCCAACCCGGGCCA
GAGGCAGAGCCCAGGCGTGCGGTGCTTCTCGGGAACACTGGCCCTGCTACCAGAGCCGCAGGAT
CCCCCATGAGTGCCTGTGAAGGGAGTCCTGGATAGTGAGGCCCTGGCTGGTCCAGGGGTGGGTA
CTCCGCCATGCCACCCATCCTCCAGCGCCTGCAGCAGGCCACCAAGATGATGAGCCGCCGGAAA
ATCCTGCTGCTGGTGCTAGGGTGCAGCACCGTAAGCCTTCTCATCCACCAGGGGGCGCAGCTCA
GCTGGTACCCCAAGCTGTTCCCCTTGAGCTGCCCTCCTCTGCGGAACTCGCCGCCGCGCCCCAA
GCACATGACTGTGGCCTTCCTGAAGACTCACAAGACGGCAGGCACGACGGTGCAGAACATCCTG
TTTCGCTTTGCCGAGCGCCACAACCTGACGGTGGCCCTGCCGCACCCGAGCTGCGAGCACCAGT
TCTGCTACCCCCGCAACTTCTCGGCGCACTTCGTGCACCCGGCCACGCGGCCGCCGCACGTGCT
GGCCAGCCACCTGCGCTTCGACCGTGCGGAGCTGGAGCGCCTCATGCCGCCCAGCACCGTCTAT
GTCACCATCCTGCGCGAGCCGGCCGCCATGTTCGAGTCGCTCTTCAGCTACTACAACCAGTACT
GCCCGGCCTTCCGGCGCGTACCCAACGCCTCGCTCGAGGCCTTCCTGCGCGCGCCCGAGGCATA
CTACCGCGCTGGCGAGCACTTCGCCATGTTCGCACACAACACGCTGGCCTACGACCTGGGCGGC
GACAATGAGCGCAGCCCGCGCGACGACGCCGCCTACCTGGCGGGCCTCATCCGCCAGGTGGAGG
AGGTTTTCTCGCTCGTCATGATCGCCGAGTACTTCGACGAGTCGCTAGTGCTGCTGCGGCGCCT
ACTGGCCTGGGACCTGGACGACGTGCTCTACGCCAAGCTCAACGCGCGCGCCGCCAGCTCGCGC
CTGGCCGCCATCCCCGCGGCGCTGGCGCGGGCGGCGCGCACCTGGAACGCCCTGGACGCCGGCC
TCTACGACCACTTCAACGCCACCTTCTGGCGCCACGTGGCGCGCGCGGGCCGCGCGTGCGTGGA
GCGCGAGGCGCGCGAGCTGCGCGAGGCCCGCCAGCGCCTACTGCGGCGCTGCTTCGGGGACGAG
CCACTGCTGCGGCCTGCCGCGCAGATCCGCACCAAGCAGCTGCAGCCGTGGCAGCCCAGCCGCA
AGGTGGACATTATGGGCTATGACCTGCCCGGCGGCGGCGCCGGCCCGGCCACCGAGGCCTGCCT
CAAGCTGGCCATGCCCGAGGTCCAGTACTCGAACTACCTGTTGCGCAAGCAGAAGCGCCGGGGC
GGTGCGCGGGCTCGGCCCGAGCCCGTCCTGGACAATCCCCCGCCTCGGCCCATCCGAGTGCTGC
CTCGCGGCCCTCAAGGTCCCTGAGCTCCGCAGGCCTCCAGGAGTATGGGTCCTGCCCTGCCCTC
CCAGGAGTCCAGCCAGGGGCTGCCTCCATGTCCTGCCCCCATGAGAGCCCTTTCTTTTCAAGGG
GCTTGAGTCCCTCGCTGAACTTTGGGGTACGCCTCCCTATCTGAGCCCCCGCTCCCGATCGTGG
GCTGAACCTTGCCTTCGGGCACGGCGCTGATAGGCTGGATCCAGCGCTGGGCCACCCTCTCCTT
CCCAGCTGGTTGGTGATTTTGACAAGAGGCCTGAGGGCTGTCCAGAACTGCTCACCCTGCCTTT
TTCTGGGGGCTGAGCCCCCACAACCTGTCTTTTCCAAGTGGATAAGCCCAGGCCCCATGGAGAG
AGGCTCAGCCCTAGGGAAAGGCTGCTCTTGCTCTCCCTCCCAGGGCTTGAGGCTCCCTATACTT
TTCTGTCTTCCAGGTTCTACCCTCCCCACAGACCTAAGCTGCTCCCAGTCTCCCAGAACCAAGA
GTTCTTGGGTTGGGATTTTTGTTTGGTTGGTTTTTCTTTTTTTTAATAAAACATCTTTAAAATG
TGCGAGTTGTATGTCAGTCATAGAAGCCGGATTCCCCACATTTGAGGATGAAACGGATGCCCAG
GAGGAGCTGTGGCTGGACCCATGAGGATGGGGGCCTGGACTCAAGGTCCCCCGCCACCTGGCAT
AGGCCTACAACCCTCCTCAACCGCTTGACCGACTGGGCCCCCAACACAGACTGGCCACCTTAGC
CCCACTCACTTTCCACATCGTTCTTTTTCACAAAATTCTGCGACATTTACTGAGCATCATCTCT
GTAACTTGGGGATACAGGTGAACCAGATAGATAGGGCCTTATTTTCATGGAGCTTATGGGGAAA
CATTGGAACAGGAGCAAGACAGGTAAGCAAAGAGGAAGGACTGGAGGGGTTAGAGCACAACACC
TCTTTGGGTGGAAGGAGGATCATTTTCAGATAAGGAGCTGCCTAACTCAGAATTTGACCTCCTC
CTGTGAATCACTGACTTCACTAATGGCCTGCTTTCCTCACAAGAAGACAACTTGGACTCAGATG
AAGACCAGTCCCTTTCTGCAGTTTCCTTTAACACAGCAAGATAGCCAGCACTTCCAGGTGAAAT
CTCCCTTAAGACTAGCAGAGAATTGGAACTTTTTCTGTTACTTTCTTCAGAGCTATATCGACGT
ATCTGGACAAGTGATAAAAAACAATAGCTATTATGGTCTACGGTGTGCCAGCCACTGTTTAAGG
GCTTTATGTATGTTAACTTTGGAGATGGGTGCCGTTTTCCAGGTGAGGGAACTGAAACTTGGGG
GAAATTAAGTCAGGGTCACACAGCCAGAAAGTGGCCACTAGGATCTCAACCAAGGCAGTGTGGC
TTCAGAGTTTGTGCTCACAAGTGCTGTCTGTAGTGCCATTCAAATAAAAAAGGTCACATGCCAC
AAGCTAGGCTGATTCCCAGCACCTTCCCCCAAAAGAATGTAAAGGGAAGAACCAGGACACTGCT
ATCAGCAACTCTTTATCCAGTTTTTCATGGAGACAACGGTTGACCTGTTTGGACAATGGACATT
ACAGTGATTGATTGGCAGGATGCATGACACGCTGGGCTTGAAAAGGGACTGTTTGTATGGCACC
CCACTTTTTACCAGCAGAGCTCTGAAAAAGGCAATAATTAGAATCATGCAAAAGCATAATTAAG
TTTCTGACATTAAGCAGCAGTAAAGAATTGTACCAGA

hide sequence

RefSeq Acc Id:

XM_017018519 ⟹ XP_016874008

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	66,041,952 - 66,045,371 (-)	NCBI

Sequence:

show sequence

GAGCCGCCGGAAAATCCTGCTGCTGGTGCTAGGGTGCAGCACCGTAAGCCTTCTCATCCACCAG
GGGGCGCAGCTCAGCTGATGCAATGATAAGTCCAGCCTAACTCAGGTGAGGGGAATACTCAAGG
GCATGAATACCAGGAGGGCAGCAGGGATCATAGAGGGCATCTTAGAGGCTACCAAGCACCGCCC
TCGACCTTTCCATGAGTGCAGCCCAGGCGGGGCCGCGCTGTGGGGCATCCCACAGTCCTTGGGT
AAGGGCAGGGGTCAAGCGGCAGCCCCCTCACACCCTCCTCTCCGCACACTCCCTGGGCCTGGCA
GGTACCCCAAGCTGTTCCCCTTGAGCTGCCCTCCTCTGCGGAACTCGCCGCCGCGCCCCAAGCA
CATGACTGTGGCCTTCCTGAAGACTCACAAGACGGCAGGCACGACGGTGCAGAACATCCTGTTT
CGCTTTGCCGAGCGCCACAACCTGACGGTGGCCCTGCCGCACCCGAGCTGCGAGCACCAGTTCT
GCTACCCCCGCAACTTCTCGGCGCACTTCGTGCACCCGGCCACGCGGCCGCCGCACGTGCTGGC
CAGCCACCTGCGCTTCGACCGTGCGGAGCTGGAGCGCCTCATGCCGCCCAGCACCGTCTATGTC
ACCATCCTGCGCGAGCCGGCCGCCATGTTCGAGTCGCTCTTCAGCTACTACAACCAGTACTGCC
CGGCCTTCCGGCGCGTACCCAACGCCTCGCTCGAGGCCTTCCTGCGCGCGCCCGAGGCATACTA
CCGCGCTGGCGAGCACTTCGCCATGTTCGCACACAACACGCTGGCCTACGACCTGGGCGGCGAC
AATGAGCGCAGCCCGCGCGACGACGCCGCCTACCTGGCGGGCCTCATCCGCCAGGTGGAGGAGG
TTTTCTCGCTCGTCATGATCGCCGAGTACTTCGACGAGTCGCTAGTGCTGCTGCGGCGCCTACT
GGCCTGGGACCTGGACGACGTGCTCTACGCCAAGCTCAACGCGCGCGCCGCCAGCTCGCGCCTG
GCCGCCATCCCCGCGGCGCTGGCGCGGGCGGCGCGCACCTGGAACGCCCTGGACGCCGGCCTCT
ACGACCACTTCAACGCCACCTTCTGGCGCCACGTGGCGCGCGCGGGCCGCGCGTGCGTGGAGCG
CGAGGCGCGCGAGCTGCGCGAGGCCCGCCAGCGCCTACTGCGGCGCTGCTTCGGGGACGAGCCA
CTGCTGCGGCCTGCCGCGCAGATCCGCACCAAGCAGCTGCAGCCGTGGCAGCCCAGCCGCAAGG
TGGACATTATGGGCTATGACCTGCCCGGCGGCGGCGCCGGCCCGGCCACCGAGGCCTGCCTCAA
GCTGGCCATGCCCGAGGTCCAGTACTCGAACTACCTGTTGCGCAAGCAGAAGCGCCGGGGCGGT
GCGCGGGCTCGGCCCGAGCCCGTCCTGGACAATCCCCCGCCTCGGCCCATCCGAGTGCTGCCTC
GCGGCCCTCAAGGTCCCTGAGCTCCGCAGGCCTCCAGGAGTATGGGTCCTGCCCTGCCCTCCCA
GGAGTCCAGCCAGGGGCTGCCTCCATGTCCTGCCCCCATGAGAGCCCTTTCTTTTCAAGGGGCT
TGAGTCCCTCGCTGAACTTTGGGGTACGCCTCCCTATCTGAGCCCCCGCTCCCGATCGTGGGCT
GAACCTTGCCTTCGGGCACGGCGCTGATAGGCTGGATCCAGCGCTGGGCCACCCTCTCCTTCCC
AGCTGGTTGGTGATTTTGACAAGAGGCCTGAGGGCTGTCCAGAACTGCTCACCCTGCCTTTTTC
TGGGGGCTGAGCCCCCACAACCTGTCTTTTCCAAGTGGATAAGCCCAGGCCCCATGGAGAGAGG
CTCAGCCCTAGGGAAAGGCTGCTCTTGCTCTCCCTCCCAGGGCTTGAGGCTCCCTATACTTTTC
TGTCTTCCAGGTTCTACCCTCCCCACAGACCTAAGCTGCTCCCAGTCTCCCAGAACCAAGAGTT
CTTGGGTTGGGATTTTTGTTTGGTTGGTTTTTCTTTTTTTTAATAAAACATCTTTAAAATGTGC
GAGTTGTATGTCAGTCATAGAAGCCGGATTCCCCACATTTGAGGATGAAACGGATGCCCAGGAG
GAGCTGTGGCTGGACCCATGAGGATGGGGGCCTGGACTCAAGGTCCCCCGCCACCTGGCATAGG
CCTACAACCCTCCTCAACCGCTTGACCGACTGGGCCCCCAACACAGACTGGCCACCTTAGCCCC
ACTCACTTTCCACATCGTTCTTTTTCACAAAATTCTGCGACATTTACTGAGCATCATCTCTGTA
ACTTGGGGATACAGGTGAACCAGATAGATAGGGCCTTATTTTCATGGAGCTTATGGGGAAACAT
TGGAACAGGAGCAAGACAGGTAAGCAAAGAGGAAGGACTGGAGGGGTTAGAGCACAACACCTCT
TTGGGTGGAAGGAGGATCATTTTCAGATAAGGAGCTGCCTAACTCAGAATTTGACCTCCTCCTG
TGAATCACTGACTTCACTAATGGCCTGCTTTCCTCACAAGAAGACAACTTGGACTCAGATGAAG
ACCAGTCCCTTTCTGCAGTTTCCTTTAACACAGCAAGATAGCCAGCACTTCCAGGTGAAATCTC
CCTTAAGACTAGCAGAGAATTGGAACTTTTTCTGTTACTTTCTTCAGAGCTATATCGACGTATC
TGGACAAGTGATAAAAAACAATAGCTATTATGGTCTACGGTGTGCCAGCCACTGTTTAAGGGCT
TTATGTATGTTAACTTTGGAGATGGGTGCCGTTTTCCAGGTGAGGGAACTGAAACTTGGGGGAA
ATTAAGTCAGGGTCACACAGCCAGAAAGTGGCCACTAGGATCTCAACCAAGGCAGTGTGGCTTC
AGAGTTTGTGCTCACAAGTGCTGTCTGTAGTGCCATTCAAATAAAAAAGGTCACATGCCA

hide sequence

RefSeq Acc Id:

XM_054370370 ⟹ XP_054226345

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	11	66,036,084 - 66,039,503 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_149025	(Get FASTA)	NCBI Sequence Viewer
	XP_016874008	(Get FASTA)	NCBI Sequence Viewer
	XP_054226345	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI13553	(Get FASTA)	NCBI Sequence Viewer
	AAI13555	(Get FASTA)	NCBI Sequence Viewer
	AAK01945	(Get FASTA)	NCBI Sequence Viewer
	BAB61900	(Get FASTA)	NCBI Sequence Viewer
	EAW74490	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000308591
	ENSP00000308591.3
	ENSP00000434829.1
GenBank Protein	Q96A11	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_149025 ⟸ NM_033036

- UniProtKB:

Q14D05 (UniProtKB/Swiss-Prot), Q96A11 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPPILQRLQQATKMMSRRKILLLVLGCSTVSLLIHQGAQLSWYPKLFPLSCPPLRNSPPRPKHM
TVAFLKTHKTAGTTVQNILFRFAERHNLTVALPHPSCEHQFCYPRNFSAHFVHPATRPPHVLAS
HLRFDRAELERLMPPSTVYVTILREPAAMFESLFSYYNQYCPAFRRVPNASLEAFLRAPEAYYR
AGEHFAMFAHNTLAYDLGGDNERSPRDDAAYLAGLIRQVEEVFSLVMIAEYFDESLVLLRRLLA
WDLDDVLYAKLNARAASSRLAAIPAALARAARTWNALDAGLYDHFNATFWRHVARAGRACVERE
ARELREARQRLLRRCFGDEPLLRPAAQIRTKQLQPWQPSRKVDIMGYDLPGGGAGPATEACLKL
AMPEVQYSNYLLRKQKRRGGARARPEPVLDNPPPRPIRVLPRGPQGP

hide sequence

RefSeq Acc Id:

XP_016874008 ⟸ XM_017018519

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNTRRAAGIIEGILEATKHRPRPFHECSPGGAALWGIPQSLGKGRGQAAAPSHPPLRTLPGPGR
YPKLFPLSCPPLRNSPPRPKHMTVAFLKTHKTAGTTVQNILFRFAERHNLTVALPHPSCEHQFC
YPRNFSAHFVHPATRPPHVLASHLRFDRAELERLMPPSTVYVTILREPAAMFESLFSYYNQYCP
AFRRVPNASLEAFLRAPEAYYRAGEHFAMFAHNTLAYDLGGDNERSPRDDAAYLAGLIRQVEEV
FSLVMIAEYFDESLVLLRRLLAWDLDDVLYAKLNARAASSRLAAIPAALARAARTWNALDAGLY
DHFNATFWRHVARAGRACVEREARELREARQRLLRRCFGDEPLLRPAAQIRTKQLQPWQPSRKV
DIMGYDLPGGGAGPATEACLKLAMPEVQYSNYLLRKQKRRGGARARPEPVLDNPPPRPIRVLPR
GPQGP

hide sequence

RefSeq Acc Id:

ENSP00000308591 ⟸ ENST00000312006

RefSeq Acc Id:

ENSP00000434829 ⟸ ENST00000527878

RefSeq Acc Id:	XP_054226345 ⟸ XM_054370370
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q96A11-F1-model_v2	AlphaFold	Q96A11	1-431	view protein structure

Promoters

RGD ID:

6788952

Promoter ID:

HG_KWN:13380

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell_12Hour, Lymphoblastoid, NB4

Transcripts:

UC001OGV.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	11	65,569,044 - 65,569,544 (-)	MPROMDB

RGD ID:

7221119

Promoter ID:

EPDNEW_H16305

Type:

initiation region

Name:

GAL3ST3_1

Description:

galactose-3-O-sulfotransferase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	66,049,155 - 66,049,215	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:24144	AgrOrtholog
COSMIC	GAL3ST3	COSMIC
Ensembl Genes	ENSG00000175229	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000312006	ENTREZGENE
	ENST00000312006.5	UniProtKB/Swiss-Prot
	ENST00000527878.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
GTEx	ENSG00000175229	GTEx
HGNC ID	HGNC:24144	ENTREZGENE
Human Proteome Map	GAL3ST3	Human Proteome Map
InterPro	Gal-3-0_sulfotransfrase	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
KEGG Report	hsa:89792	UniProtKB/Swiss-Prot
NCBI Gene	89792	ENTREZGENE
OMIM	608234	OMIM
PANTHER	GALACTOSE-3-O-SULFOTRANSFERASE 3	UniProtKB/Swiss-Prot
	PTHR14647	UniProtKB/Swiss-Prot
Pfam	Gal-3-0_sulfotr	UniProtKB/Swiss-Prot
PharmGKB	PA134864180	PharmGKB
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	G3ST3_HUMAN	UniProtKB/Swiss-Prot
	Q14D05	ENTREZGENE
	Q96A11	ENTREZGENE
UniProt Secondary	Q14D05	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Human Phenotype Annotations - ClinVar

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Human Phenotype Annotations - ClinVar