MED15P1 (mediator complex subunit 15 pseudogene 1) - Rat Genome Database

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Gene: MED15P1 (mediator complex subunit 15 pseudogene 1) Homo sapiens
Analyze
Symbol: MED15P1
Name: mediator complex subunit 15 pseudogene 1
RGD ID: 1343143
HGNC Page HGNC:19271
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: MED15P; PCQAPP
Related Functional Gene: MED15  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381419,485,315 - 19,489,687 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1418,912,805 - 18,916,642 (-)EnsemblGRCh38hg38GRCh38
GRCh371419,498,019 - 19,502,391 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361418,567,920 - 18,572,484 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map14q11.2NCBI
CHM1_11419,499,734 - 19,504,098 (-)NCBICHM1_1
T2T-CHM13v2.01413,796,742 - 13,801,114 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:653
Count of miRNA genes:489
Interacting mature miRNAs:537
Transcripts:ENST00000548141, ENST00000552968
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 2 4 2 9 3 7 5 10 1 14 14 1
Below cutoff 18 14 19 11 51 11 35 6 28 7 224 35 1 8 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000552968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1418,914,092 - 18,916,544 (-)Ensembl
RefSeq Acc Id: ENST00000620166
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1418,912,805 - 18,916,642 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MED15P1 COSMIC
Ensembl Genes ENSG00000257853 Ensembl
GTEx ENSG00000257853 GTEx
HGNC ID HGNC:19271 ENTREZGENE
Human Proteome Map MED15P1 Human Proteome Map
NCBI Gene 326615 ENTREZGENE
PharmGKB PA134983883 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 MED15P1  mediator complex subunit 15 pseudogene 1  MED15P  mediator complex subunit 15 pseudogene  Symbol and/or name change 5135510 APPROVED