KRT15 (keratin 15) - Rat Genome Database

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Gene: KRT15 (keratin 15) Homo sapiens
Analyze
Symbol: KRT15
Name: keratin 15
RGD ID: 1342638
HGNC Page HGNC:6421
Description: Enables scaffold protein binding activity. Predicted to be involved in epithelial cell differentiation and intermediate filament organization. Located in extracellular exosome and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CK-15; CK15; cytokeratin 15; cytokeratin-15; K15; K1CO; keratin 15, type I; keratin, type I cytoskeletal 15; keratin-15; keratin-15, basic; keratin-15, beta; type I cytoskeletal 15
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,513,745 - 41,518,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,513,745 - 41,522,529 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,669,997 - 39,675,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,923,524 - 36,928,666 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,923,523 - 36,928,666NCBI
Celera1736,323,221 - 36,328,494 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,433,612 - 35,438,885 (-)NCBIHuRef
CHM1_11739,905,306 - 39,910,579 (-)NCBICHM1_1
T2T-CHM13v2.01742,369,289 - 42,379,059 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
2-hydroxypropanoic acid  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (EXP)
adefovir pivoxil  (EXP)
aflatoxin B1  (EXP)
all-trans-4-oxoretinoic acid  (EXP)
all-trans-retinoic acid  (EXP,ISO)
aristolochic acid A  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bexarotene  (EXP)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (EXP)
cadmium dichloride  (EXP)
calcitriol  (EXP)
chloroacetaldehyde  (EXP)
chromium(6+)  (ISO)
chrysene  (ISO)
cidofovir anhydrous  (EXP)
cisplatin  (EXP)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP)
decabromodiphenyl ether  (ISO)
dimethyl sulfoxide  (EXP)
dimethylarsinic acid  (ISO)
dimethylarsinous acid  (EXP)
dioxygen  (EXP)
diuron  (ISO)
ethylparaben  (EXP)
fenvalerate  (ISO)
genistein  (ISO)
gentamycin  (ISO)
graphite  (ISO)
hydrogen peroxide  (EXP)
ifosfamide  (EXP)
isotretinoin  (EXP)
lead(0)  (EXP)
lipopolysaccharide  (EXP)
methimazole  (ISO)
methylseleninic acid  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-butyl-N-(4-hydroxybutyl)nitrosamine  (ISO)
nickel atom  (EXP)
nicotine  (EXP)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (EXP)
phenobarbital  (ISO)
progesterone  (ISO)
quercetin  (EXP)
rac-lactic acid  (EXP)
resveratrol  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sotorasib  (EXP)
sulforaphane  (ISO)
temozolomide  (EXP)
tetraphene  (ISO)
titanium dioxide  (ISO)
trametinib  (EXP)
trichloroethene  (ISO)
valproic acid  (EXP)
vinclozolin  (ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1702379   PMID:2424675   PMID:2452170   PMID:2466616   PMID:2468493   PMID:2580298   PMID:6186381   PMID:10084315   PMID:10623468   PMID:10623642   PMID:10852826   PMID:12477932  
PMID:14702039   PMID:15060141   PMID:15489334   PMID:16189514   PMID:16831889   PMID:18789069   PMID:19162247   PMID:19199708   PMID:19380743   PMID:19383306   PMID:20050020   PMID:20656376  
PMID:20700038   PMID:20936779   PMID:21251039   PMID:21516116   PMID:21574054   PMID:21630459   PMID:21873635   PMID:22020285   PMID:22458338   PMID:22538425   PMID:22648550   PMID:23398472  
PMID:24260555   PMID:24940650   PMID:25324306   PMID:25416956   PMID:25910212   PMID:26871637   PMID:26949251   PMID:27107014   PMID:27229929   PMID:27797221   PMID:27812135   PMID:28515276  
PMID:29360040   PMID:29795372   PMID:29845934   PMID:29892012   PMID:30561431   PMID:31501420   PMID:31515488   PMID:31626202   PMID:31797724   PMID:31862882   PMID:31884802   PMID:32296183  
PMID:32449621   PMID:33111431   PMID:35256949   PMID:35477819   PMID:35866777   PMID:36526897   PMID:36949045   PMID:37243844  


Genomics

Comparative Map Data
KRT15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,513,745 - 41,518,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,513,745 - 41,522,529 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,669,997 - 39,675,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,923,524 - 36,928,666 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,923,523 - 36,928,666NCBI
Celera1736,323,221 - 36,328,494 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,433,612 - 35,438,885 (-)NCBIHuRef
CHM1_11739,905,306 - 39,910,579 (-)NCBICHM1_1
T2T-CHM13v2.01742,369,289 - 42,379,059 (-)NCBIT2T-CHM13v2.0
Krt15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,022,585 - 100,026,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,022,584 - 100,026,754 (-)EnsemblGRCm39 Ensembl
GRCm3811100,131,759 - 100,135,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,131,758 - 100,135,928 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,993,073 - 99,997,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,948,107 - 99,951,948 (-)NCBIMGSCv36mm8
Celera11110,748,140 - 110,752,330 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.41NCBI
Krt15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,567,197 - 85,571,014 (-)NCBIGRCr8
mRatBN7.21085,066,797 - 85,070,614 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,066,802 - 85,171,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,084,825 - 90,088,639 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01089,583,152 - 89,586,969 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01084,975,102 - 84,978,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,046,803 - 88,050,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,046,803 - 88,050,622 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,839,480 - 87,843,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,071,915 - 89,075,732 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,086,527 - 89,090,031 (-)NCBI
Celera1083,786,185 - 83,790,002 (-)NCBICelera
Cytogenetic Map10q31NCBI
KRT15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,465,877 - 23,471,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,356,021 - 25,361,170 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,794,336 - 15,802,977 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,011,990 - 16,020,629 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,011,990 - 16,020,629 (+)Ensemblpanpan1.1panPan2
KRT15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,249,887 - 21,254,131 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,711,662 - 20,715,906 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,970,818 - 21,975,062 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,856,556 - 21,975,058 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,756,828 - 20,761,072 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,022,850 - 21,027,094 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,126,648 - 21,130,893 (+)NCBIUU_Cfam_GSD_1.0
Krt15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,638,983 - 20,643,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649016,431,558 - 16,526,000 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649016,431,604 - 16,436,139 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,124,705 - 21,130,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,124,605 - 21,130,247 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,488,881 - 21,495,028 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRT15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,723,180 - 64,729,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,724,364 - 64,729,581 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,569,404 - 35,574,581 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in KRT15
25 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3 copy number gain See cases [RCV000050957] Chr17:36449220..68170214 [GRCh38]
Chr17:48563237..65936105 [GRCh37]
Chr17:45918236..63677950 [NCBI36]
Chr17:17q21.33-24.2		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q12-21.31(chr17:39199873-45629579)x3 copy number gain See cases [RCV000052479] Chr17:39199873..45629579 [GRCh38]
Chr17:37356126..43706945 [GRCh37]
Chr17:34609652..41062728 [NCBI36]
Chr17:17q12-21.31		 pathogenic
NM_002275.3(KRT15):c.568G>A (p.Asp190Asn) single nucleotide variant Malignant melanoma [RCV000071476] Chr17:41517096 [GRCh38]
Chr17:39673348 [GRCh37]
Chr17:36926874 [NCBI36]
Chr17:17q21.2		 not provided
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_002275.4(KRT15):c.1023C>G (p.Ser341Arg) single nucleotide variant Inborn genetic diseases [RCV003292950] Chr17:41515888 [GRCh38]
Chr17:39672140 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.598G>A (p.Ala200Thr) single nucleotide variant Inborn genetic diseases [RCV003274802] Chr17:41516948 [GRCh38]
Chr17:39673200 [GRCh37]
Chr17:17q21.2		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q21.2(chr17:39659636-39686057)x3 copy number gain not provided [RCV000739515] Chr17:39659636..39686057 [GRCh37]
Chr17:17q21.2		 benign
GRCh37/hg19 17q21.2(chr17:39661366-39686057)x3 copy number gain not provided [RCV000739516] Chr17:39661366..39686057 [GRCh37]
Chr17:17q21.2		 benign
NM_002275.4(KRT15):c.1083G>A (p.Leu361=) single nucleotide variant not provided [RCV000910845] Chr17:41515636 [GRCh38]
Chr17:39671888 [GRCh37]
Chr17:17q21.2		 likely benign
NM_002275.4(KRT15):c.95G>A (p.Gly32Glu) single nucleotide variant not provided [RCV000965380] Chr17:41518733 [GRCh38]
Chr17:39674985 [GRCh37]
Chr17:17q21.2		 benign
NM_002275.4(KRT15):c.751T>C (p.Phe251Leu) single nucleotide variant Inborn genetic diseases [RCV003256314] Chr17:41516253 [GRCh38]
Chr17:39672505 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1205A>G (p.Glu402Gly) single nucleotide variant Inborn genetic diseases [RCV002907193] Chr17:41515514 [GRCh38]
Chr17:39671766 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1130A>G (p.Glu377Gly) single nucleotide variant Inborn genetic diseases [RCV002902151] Chr17:41515589 [GRCh38]
Chr17:39671841 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.41G>A (p.Gly14Glu) single nucleotide variant Inborn genetic diseases [RCV002732770] Chr17:41518787 [GRCh38]
Chr17:39675039 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1210G>A (p.Ala404Thr) single nucleotide variant Inborn genetic diseases [RCV002733629] Chr17:41515509 [GRCh38]
Chr17:39671761 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1339C>A (p.Gln447Lys) single nucleotide variant Inborn genetic diseases [RCV002692306] Chr17:41514055 [GRCh38]
Chr17:39670307 [GRCh37]
Chr17:17q21.2		 likely benign
NM_002275.4(KRT15):c.94G>A (p.Gly32Arg) single nucleotide variant Inborn genetic diseases [RCV002738165] Chr17:41518734 [GRCh38]
Chr17:39674986 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.122G>A (p.Ser41Asn) single nucleotide variant Inborn genetic diseases [RCV002704919] Chr17:41518706 [GRCh38]
Chr17:39674958 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.490C>T (p.Arg164Trp) single nucleotide variant Inborn genetic diseases [RCV002950692] Chr17:41518338 [GRCh38]
Chr17:39674590 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1220G>A (p.Arg407His) single nucleotide variant Inborn genetic diseases [RCV002645280] Chr17:41515499 [GRCh38]
Chr17:39671751 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.92G>A (p.Gly31Asp) single nucleotide variant Inborn genetic diseases [RCV002954649] Chr17:41518736 [GRCh38]
Chr17:39674988 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.473A>G (p.Lys158Arg) single nucleotide variant Inborn genetic diseases [RCV003004904] Chr17:41518355 [GRCh38]
Chr17:39674607 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.664G>T (p.Ala222Ser) single nucleotide variant Inborn genetic diseases [RCV002792999] Chr17:41516882 [GRCh38]
Chr17:39673134 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.548A>G (p.Asn183Ser) single nucleotide variant Inborn genetic diseases [RCV002831581] Chr17:41517116 [GRCh38]
Chr17:39673368 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.880G>A (p.Glu294Lys) single nucleotide variant Inborn genetic diseases [RCV003194378] Chr17:41516124 [GRCh38]
Chr17:39672376 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.667A>G (p.Arg223Gly) single nucleotide variant Inborn genetic diseases [RCV003200575] Chr17:41516879 [GRCh38]
Chr17:39673131 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.32C>A (p.Ser11Tyr) single nucleotide variant Inborn genetic diseases [RCV003203942] Chr17:41518796 [GRCh38]
Chr17:39675048 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.1193G>A (p.Arg398Gln) single nucleotide variant Inborn genetic diseases [RCV003175432] Chr17:41515526 [GRCh38]
Chr17:39671778 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.454G>A (p.Asp152Asn) single nucleotide variant Inborn genetic diseases [RCV003384869] Chr17:41518374 [GRCh38]
Chr17:39674626 [GRCh37]
Chr17:17q21.2		 uncertain significance
NM_002275.4(KRT15):c.125G>A (p.Arg42Gln) single nucleotide variant not provided [RCV003428274] Chr17:41518703 [GRCh38]
Chr17:39674955 [GRCh37]
Chr17:17q21.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3272
Count of miRNA genes:1032
Interacting mature miRNAs:1278
Transcripts:ENST00000254043, ENST00000393974, ENST00000393976, ENST00000393981, ENST00000458290, ENST00000463447, ENST00000470004, ENST00000474031, ENST00000497016, ENST00000586794
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-79605  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371739,670,288 - 39,670,478UniSTSGRCh37
Build 361736,923,814 - 36,924,004RGDNCBI36
Celera1736,323,512 - 36,323,702RGD
Cytogenetic Map17q21.2UniSTS
HuRef1735,433,903 - 35,434,093UniSTS
TNG Radiation Hybrid Map1718508.0UniSTS
KRT15_3016  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371739,669,808 - 39,670,401UniSTSGRCh37
Build 361736,923,334 - 36,923,927RGDNCBI36
Celera1736,323,032 - 36,323,625RGD
HuRef1735,433,423 - 35,434,016UniSTS
RH17477  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371739,670,131 - 39,670,256UniSTSGRCh37
Build 361736,923,657 - 36,923,782RGDNCBI36
Celera1736,323,355 - 36,323,480RGD
Cytogenetic Map17q21.2UniSTS
HuRef1735,433,746 - 35,433,871UniSTS
GeneMap99-GB4 RH Map17307.04UniSTS
NCBI RH Map17483.8UniSTS
SHGC-12347  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371739,669,998 - 39,670,272UniSTSGRCh37
Build 361736,923,524 - 36,923,798RGDNCBI36
Celera1736,323,222 - 36,323,496RGD
Cytogenetic Map17q21.2UniSTS
HuRef1735,433,613 - 35,433,887UniSTS
TNG Radiation Hybrid Map1718508.0UniSTS
GeneMap99-GB4 RH Map17309.01UniSTS
Whitehead-RH Map17343.6UniSTS
GeneMap99-G3 RH Map172158.0UniSTS
D11S3114  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map10q11.1-q24UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic MapXq13.1-q21.1UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map9p23UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map6p12UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map22q12.3-q13.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map1p32.2-p32.1UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map14q24.2UniSTS
Krt15  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371739,671,807 - 39,672,434UniSTSGRCh37
Celera1736,325,031 - 36,325,658UniSTS
HuRef1735,435,422 - 35,436,049UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 42 2 17 6 11
Medium 57 5 26 167 10 10 1314 23 10 27 699 206 167 34 698
Low 974 283 293 45 214 44 652 245 624 109 409 819 3 240 518 3
Below cutoff 1394 2645 1245 262 1165 263 2320 1900 2989 165 314 567 1 928 1551 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_002275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC019349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF202320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000254043   ⟹   ENSP00000254043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,513,745 - 41,518,890 (-)Ensembl
RefSeq Acc Id: ENST00000393974   ⟹   ENSP00000377544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,513,745 - 41,521,019 (-)Ensembl
RefSeq Acc Id: ENST00000393976   ⟹   ENSP00000377546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,513,746 - 41,521,719 (-)Ensembl
RefSeq Acc Id: ENST00000458290   ⟹   ENSP00000409282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,515,562 - 41,522,529 (-)Ensembl
RefSeq Acc Id: ENST00000463447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,515,885 - 41,521,783 (-)Ensembl
RefSeq Acc Id: ENST00000470004   ⟹   ENSP00000467875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,516,808 - 41,521,819 (-)Ensembl
RefSeq Acc Id: ENST00000474031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,513,746 - 41,521,774 (-)Ensembl
RefSeq Acc Id: ENST00000497016   ⟹   ENSP00000466687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,516,104 - 41,521,901 (-)Ensembl
RefSeq Acc Id: ENST00000586794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1741,513,757 - 41,514,754 (-)Ensembl
RefSeq Acc Id: NM_002275   ⟹   NP_002266
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381741,513,745 - 41,518,890 (-)NCBI
GRCh371739,669,997 - 39,678,033 (-)NCBI
Build 361736,923,524 - 36,928,666 (-)NCBI Archive
HuRef1735,433,612 - 35,438,885 (-)ENTREZGENE
CHM1_11739,905,306 - 39,910,579 (-)NCBI
T2T-CHM13v2.01742,369,289 - 42,374,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524784   ⟹   XP_011523086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381741,513,745 - 41,518,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017024614   ⟹   XP_016880103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381741,514,106 - 41,518,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054316022   ⟹   XP_054171997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01742,369,289 - 42,379,059 (-)NCBI
RefSeq Acc Id: XM_054316023   ⟹   XP_054171998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01742,369,289 - 42,379,059 (-)NCBI
RefSeq Acc Id: XM_054316024   ⟹   XP_054171999
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01742,369,650 - 42,374,434 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_002266   ⟸   NM_002275
- UniProtKB: Q53XV8 (UniProtKB/Swiss-Prot),   P19012 (UniProtKB/Swiss-Prot),   E0CX14 (UniProtKB/Swiss-Prot),   B3KRA2 (UniProtKB/Swiss-Prot),   B3KQY1 (UniProtKB/Swiss-Prot),   Q9BUG4 (UniProtKB/Swiss-Prot),   B3KVF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523086   ⟸   XM_011524784
- Peptide Label: isoform X1
- UniProtKB: B3KVF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880103   ⟸   XM_017024614
- Peptide Label: isoform X2
- UniProtKB: B3KVF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000254043   ⟸   ENST00000254043
RefSeq Acc Id: ENSP00000466687   ⟸   ENST00000497016
RefSeq Acc Id: ENSP00000409282   ⟸   ENST00000458290
RefSeq Acc Id: ENSP00000467875   ⟸   ENST00000470004
RefSeq Acc Id: ENSP00000377546   ⟸   ENST00000393976
RefSeq Acc Id: ENSP00000377544   ⟸   ENST00000393974
RefSeq Acc Id: XP_054171998   ⟸   XM_054316023
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054171997   ⟸   XM_054316022
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054171999   ⟸   XM_054316024
- Peptide Label: isoform X2
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19012-F1-model_v2 AlphaFold P19012 1-456 view protein structure

Promoters
RGD ID:6794046
Promoter ID:HG_KWN:26126
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562
Transcripts:ENST00000393974,   ENST00000393976,   OTTHUMT00000257301,   OTTHUMT00000257302,   OTTHUMT00000257303,   OTTHUMT00000257903,   OTTHUMT00000257904,   OTTHUMT00000257906,   UC002HWZ.1,   UC002HXC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361736,931,771 - 36,932,672 (-)MPROMDB
RGD ID:7234989
Promoter ID:EPDNEW_H23240
Type:multiple initiation site
Name:KRT15_1
Description:keratin 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381741,518,890 - 41,518,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6421 AgrOrtholog
COSMIC KRT15 COSMIC
Ensembl Genes ENSG00000171346 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000254043 ENTREZGENE
  ENST00000254043.8 UniProtKB/Swiss-Prot
  ENST00000393974.7 UniProtKB/TrEMBL
  ENST00000393976.6 UniProtKB/Swiss-Prot
  ENST00000458290.5 UniProtKB/TrEMBL
  ENST00000470004.1 UniProtKB/TrEMBL
  ENST00000497016.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000171346 GTEx
HGNC ID HGNC:6421 ENTREZGENE
Human Proteome Map KRT15 Human Proteome Map
InterPro IF_conserved UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Keratin_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3866 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 3866 ENTREZGENE
OMIM 148030 OMIM
PANTHER KERATIN, TYPE I CYTOSKELETAL 15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA30208 PharmGKB
PRINTS TYPE1KERATIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prefoldin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8MT21_HUMAN UniProtKB/TrEMBL
  B3KQY1 ENTREZGENE
  B3KRA2 ENTREZGENE
  B3KVF5 ENTREZGENE, UniProtKB/TrEMBL
  C9JTG5_HUMAN UniProtKB/TrEMBL
  E0CX14 ENTREZGENE
  K1C15_HUMAN UniProtKB/Swiss-Prot
  K7EMX0_HUMAN UniProtKB/TrEMBL
  K7EQK9_HUMAN UniProtKB/TrEMBL
  P19012 ENTREZGENE
  Q53XV8 ENTREZGENE
  Q9BUG4 ENTREZGENE
UniProt Secondary B3KQY1 UniProtKB/Swiss-Prot
  B3KRA2 UniProtKB/Swiss-Prot
  E0CX14 UniProtKB/Swiss-Prot
  Q53XV8 UniProtKB/Swiss-Prot
  Q9BUG4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 KRT15  keratin 15  KRT15  keratin 15, type I  Symbol and/or name change 5135510 APPROVED
2015-01-27 KRT15  keratin 15, type I  KRT15  keratin 15  Symbol and/or name change 5135510 APPROVED