LINC00473 (long intergenic non-protein coding RNA 473) - Rat Genome Database

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Gene: LINC00473 (long intergenic non-protein coding RNA 473) Homo sapiens
Analyze
Symbol: LINC00473 (Ensembl: PDE10A)
Name: long intergenic non-protein coding RNA 473 (Ensembl:phosphodiesterase 10A)
RGD ID: 1342598
HGNC Page HGNC:21160
Description: Involved in DNA-templated transcription.
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: bA142J11.1; C6orf176; LNC473
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386165,924,048 - 165,988,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6165,327,287 - 165,988,117 (-)EnsemblGRCh38hg38GRCh38
GRCh376166,337,536 - 166,401,527 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366166,257,526 - 166,321,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 346166,323,360 - 166,371,938NCBI
Celera6167,077,057 - 167,141,065 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6163,801,223 - 163,866,470 (-)NCBIHuRef
CHM1_16166,601,769 - 166,665,755 (-)NCBICHM1_1
T2T-CHM13v2.06167,292,278 - 167,356,308 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16344560   PMID:22108211   PMID:26947914   PMID:28052243   PMID:28942243   PMID:29159834   PMID:29353885   PMID:29605299   PMID:30071345   PMID:30126852   PMID:30848493  
PMID:31017716   PMID:31081095   PMID:31206665   PMID:31561732   PMID:31562977   PMID:31584290   PMID:31894297   PMID:32304628   PMID:32440687   PMID:32495868   PMID:32829248   PMID:34109708  
PMID:35167623   PMID:36305147   PMID:37019214   PMID:38512964  


Genomics

Variants

.
Variants in LINC00473
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6q25.3-27(chr6:160484810-170612011)x1 copy number loss See cases [RCV000134021] Chr6:160484810..170612011 [GRCh38]
Chr6:160905842..170921099 [GRCh37]
Chr6:160825832..170763024 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q27(chr6:164790270-170612001)x1 copy number loss See cases [RCV000135415] Chr6:164790270..170612001 [GRCh38]
Chr6:165203779..170921089 [GRCh37]
Chr6:165123769..170763014 [NCBI36]
Chr6:6q27		 pathogenic
GRCh38/hg38 6q25.2-27(chr6:154539655-170714507)x1 copy number loss See cases [RCV000137381] Chr6:154539655..170714507 [GRCh38]
Chr6:154860789..171023595 [GRCh37]
Chr6:154902481..170865520 [NCBI36]
Chr6:6q25.2-27		 pathogenic
GRCh38/hg38 6q27(chr6:165631374-166405780)x3 copy number gain See cases [RCV000140297] Chr6:165631374..166405780 [GRCh38]
Chr6:166044862..166819268 [GRCh37]
Chr6:165964852..166739258 [NCBI36]
Chr6:6q27		 uncertain significance
GRCh38/hg38 6q27(chr6:165631374-166361022)x3 copy number gain See cases [RCV000140298] Chr6:165631374..166361022 [GRCh38]
Chr6:166044862..166774510 [GRCh37]
Chr6:165964852..166694500 [NCBI36]
Chr6:6q27		 uncertain significance
GRCh38/hg38 6q25.3-27(chr6:159915390-170714507)x1 copy number loss See cases [RCV000139636] Chr6:159915390..170714507 [GRCh38]
Chr6:160336422..171023595 [GRCh37]
Chr6:160256412..170865520 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q25.2-27(chr6:152793402-170610394)x1 copy number loss See cases [RCV000141880] Chr6:152793402..170610394 [GRCh38]
Chr6:153114537..170919482 [GRCh37]
Chr6:153156230..170761407 [NCBI36]
Chr6:6q25.2-27		 pathogenic
GRCh38/hg38 6q25.2-27(chr6:152376338-170612001)x3 copy number gain See cases [RCV000142594] Chr6:152376338..170612001 [GRCh38]
Chr6:152697473..170921089 [GRCh37]
Chr6:152739166..170763014 [NCBI36]
Chr6:6q25.2-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:160899898-170610394)x1 copy number loss See cases [RCV000143619] Chr6:160899898..170610394 [GRCh38]
Chr6:161320930..170919482 [GRCh37]
Chr6:161240920..170761407 [NCBI36]
Chr6:6q26-27		 pathogenic
GRCh38/hg38 6q24.1-27(chr6:141132990-169339571)x3 copy number gain See cases [RCV000050604] Chr6:141132990..169339571 [GRCh38]
Chr6:141454127..169739666 [GRCh37]
Chr6:141495820..169481591 [NCBI36]
Chr6:6q24.1-27		 pathogenic
GRCh38/hg38 6q25.2-27(chr6:154118058-170602152)x1 copy number loss See cases [RCV000052207] Chr6:154118058..170602152 [GRCh38]
Chr6:154439193..170911240 [GRCh37]
Chr6:154480885..170753165 [NCBI36]
Chr6:6q25.2-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:159825913-170612001)x1 copy number loss See cases [RCV000052211] Chr6:159825913..170612001 [GRCh38]
Chr6:160246945..170921089 [GRCh37]
Chr6:160166935..170763014 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:160328288-170612001)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|See cases [RCV000052212] Chr6:160328288..170612001 [GRCh38]
Chr6:160749320..170921089 [GRCh37]
Chr6:160669310..170763014 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:160359686-170608818)x1 copy number loss See cases [RCV000052213] Chr6:160359686..170608818 [GRCh38]
Chr6:160780718..170917906 [GRCh37]
Chr6:160700708..170759831 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:160422761-170612001)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|See cases [RCV000052214] Chr6:160422761..170612001 [GRCh38]
Chr6:160843793..170921089 [GRCh37]
Chr6:160763783..170763014 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:161205328-170581161)x1 copy number loss See cases [RCV000052215] Chr6:161205328..170581161 [GRCh38]
Chr6:161626360..170890249 [GRCh37]
Chr6:161546350..170732174 [NCBI36]
Chr6:6q26-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:162042846-170608818)x1 copy number loss See cases [RCV000052223] Chr6:162042846..170608818 [GRCh38]
Chr6:162463878..170917906 [GRCh37]
Chr6:162383868..170759831 [NCBI36]
Chr6:6q26-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:162789915-170602152)x1 copy number loss See cases [RCV000052224] Chr6:162789915..170602152 [GRCh38]
Chr6:163210947..170911240 [GRCh37]
Chr6:163130937..170753165 [NCBI36]
Chr6:6q26-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:163420224-170608818)x1 copy number loss See cases [RCV000052225] Chr6:163420224..170608818 [GRCh38]
Chr6:163841256..170917906 [GRCh37]
Chr6:163761246..170759831 [NCBI36]
Chr6:6q26-27		 pathogenic
GRCh38/hg38 6q27(chr6:165126489-170581161)x1 copy number loss See cases [RCV000052226] Chr6:165126489..170581161 [GRCh38]
Chr6:165539978..170890249 [GRCh37]
Chr6:165459968..170732174 [NCBI36]
Chr6:6q27		 pathogenic
GRCh38/hg38 6q25.2-27(chr6:152376338-170583214)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|See cases [RCV000051902] Chr6:152376338..170583214 [GRCh38]
Chr6:152697473..170892302 [GRCh37]
Chr6:152739166..170734227 [NCBI36]
Chr6:6q25.2-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:158664768-170612001)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|See cases [RCV000051904] Chr6:158664768..170612001 [GRCh38]
Chr6:159085800..170921089 [GRCh37]
Chr6:159005788..170763014 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q25.3-27(chr6:159454639-170612001)x1 copy number loss See cases [RCV000052209] Chr6:159454639..170612001 [GRCh38]
Chr6:159875671..170921089 [GRCh37]
Chr6:159795661..170763014 [NCBI36]
Chr6:6q25.3-27		 pathogenic
GRCh38/hg38 6q26-27(chr6:161349282-170584790)x1 copy number loss Neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures [RCV003327715] Chr6:161349282..170584790 [GRCh38]
Chr6:6q26-27		 pathogenic
NC_000006.12:g.165986189C>T single nucleotide variant not provided [RCV003327269] Chr6:165986189 [GRCh38]
Chr6:166399677 [GRCh37]
Chr6:6q27		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:618
Count of miRNA genes:499
Interacting mature miRNAs:545
Transcripts:ENST00000444465, ENST00000455853, ENST00000581850, ENST00000584179, ENST00000584911
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
AL033626  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,239,930 - 153,240,009UniSTSGRCh37
Build 361151,506,554 - 151,506,633RGDNCBI36
Celera1126,311,184 - 126,311,263RGD
Cytogenetic Map6q27UniSTS
HuRef6163,823,904 - 163,823,984UniSTS
HuRef1124,603,314 - 124,603,393UniSTS
RH102444  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376166,353,125 - 166,353,283UniSTSGRCh37
Build 366166,273,115 - 166,273,273RGDNCBI36
Celera6167,092,648 - 167,092,806RGD
Cytogenetic Map6q27UniSTS
HuRef6163,817,525 - 163,817,683UniSTS
GeneMap99-GB4 RH Map6633.55UniSTS
SHGC-85237  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376166,349,583 - 166,349,868UniSTSGRCh37
Build 366166,269,573 - 166,269,858RGDNCBI36
Celera6167,089,106 - 167,089,391RGD
Cytogenetic Map6q27UniSTS
HuRef6163,813,983 - 163,814,268UniSTS
TNG Radiation Hybrid Map675174.0UniSTS
D6S392  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376166,356,588 - 166,356,880UniSTSGRCh37
Build 366166,276,578 - 166,276,870RGDNCBI36
Celera6167,096,113 - 167,096,422RGD
Cytogenetic Map6q27UniSTS
HuRef6163,820,990 - 163,821,279UniSTS
D6S2174  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376166,382,378 - 166,382,507UniSTSGRCh37
Build 366166,302,368 - 166,302,497RGDNCBI36
Celera6167,121,921 - 167,122,050RGD
Cytogenetic Map6q27UniSTS
HuRef6163,847,083 - 163,847,212UniSTS
Stanford-G3 RH Map66506.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 11 3 46 2 3 2 9 10 416 64 29 81 5 2
Low 1873 2038 1258 196 498 107 2592 1263 3103 296 1247 1349 96 1183 1473 2
Below cutoff 496 675 399 405 649 334 1743 891 195 56 128 106 75 1 16 1313 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000366882   ⟹   ENSP00000355847
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,314 - 165,987,957 (-)Ensembl
RefSeq Acc Id: ENST00000444465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,908,802 - 165,987,922 (-)Ensembl
RefSeq Acc Id: ENST00000455853
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,939,456 - 165,988,039 (-)Ensembl
RefSeq Acc Id: ENST00000535229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,780,269 - 165,986,496 (-)Ensembl
RefSeq Acc Id: ENST00000539869   ⟹   ENSP00000438284
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,663,241 (-)Ensembl
RefSeq Acc Id: ENST00000580695   ⟹   ENSP00000498124
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,543,533 - 165,986,603 (-)Ensembl
RefSeq Acc Id: ENST00000581850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,940,589 - 165,987,914 (-)Ensembl
RefSeq Acc Id: ENST00000584179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,946,772 - 165,987,991 (-)Ensembl
RefSeq Acc Id: ENST00000584911
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,948,223 - 165,988,048 (-)Ensembl
RefSeq Acc Id: ENST00000616273   ⟹   ENSP00000478556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,660,069 - 165,662,554 (-)Ensembl
RefSeq Acc Id: ENST00000647590   ⟹   ENSP00000497062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,661,073 (-)Ensembl
RefSeq Acc Id: ENST00000647768   ⟹   ENSP00000497930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,331,050 - 165,986,603 (-)Ensembl
RefSeq Acc Id: ENST00000647837   ⟹   ENSP00000497085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,287 - 165,662,100 (-)Ensembl
RefSeq Acc Id: ENST00000647989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,287 - 165,611,496 (-)Ensembl
RefSeq Acc Id: ENST00000648884   ⟹   ENSP00000497392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,600,778 (-)Ensembl
RefSeq Acc Id: ENST00000648917   ⟹   ENSP00000497277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,655,336 (-)Ensembl
RefSeq Acc Id: ENST00000649247   ⟹   ENSP00000497558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,654,881 (-)Ensembl
RefSeq Acc Id: ENST00000649273   ⟹   ENSP00000496879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,287 - 165,482,343 (-)Ensembl
RefSeq Acc Id: ENST00000649362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,901,820 - 165,924,592 (-)Ensembl
RefSeq Acc Id: ENST00000649754
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,823,645 - 165,987,923 (-)Ensembl
RefSeq Acc Id: ENST00000649761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,289 - 165,503,356 (-)Ensembl
RefSeq Acc Id: ENST00000649882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,711,019 - 165,988,078 (-)Ensembl
RefSeq Acc Id: ENST00000650248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,893,825 - 165,988,062 (-)Ensembl
RefSeq Acc Id: ENST00000672224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,893,842 - 165,896,237 (-)Ensembl
RefSeq Acc Id: ENST00000672859   ⟹   ENSP00000500900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,331,404 - 165,987,935 (-)Ensembl
RefSeq Acc Id: ENST00000672902   ⟹   ENSP00000500351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,384 - 165,987,965 (-)Ensembl
RefSeq Acc Id: ENST00000676766   ⟹   ENSP00000504611
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,331,050 - 165,986,603 (-)Ensembl
RefSeq Acc Id: ENST00000676767   ⟹   ENSP00000504723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,314 - 165,543,495 (-)Ensembl
RefSeq Acc Id: ENST00000678161   ⟹   ENSP00000503721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,314 - 165,988,033 (-)Ensembl
RefSeq Acc Id: ENST00000678462   ⟹   ENSP00000503041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,396,340 - 165,543,506 (-)Ensembl
RefSeq Acc Id: ENST00000685292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,542,655 - 165,987,674 (-)Ensembl
RefSeq Acc Id: ENST00000685414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,499 - 165,336,644 (-)Ensembl
RefSeq Acc Id: ENST00000686660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,327,314 - 165,381,597 (-)Ensembl
RefSeq Acc Id: ENST00000687318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,790,582 - 165,988,039 (-)Ensembl
RefSeq Acc Id: ENST00000689721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,872,269 - 165,988,033 (-)Ensembl
RefSeq Acc Id: ENST00000690845
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,778,326 - 165,987,964 (-)Ensembl
RefSeq Acc Id: ENST00000690869
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,901,881 - 165,987,935 (-)Ensembl
RefSeq Acc Id: ENST00000691218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,901,928 - 165,988,062 (-)Ensembl
RefSeq Acc Id: ENST00000693427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,938,914 - 165,987,990 (-)Ensembl
RefSeq Acc Id: ENST00000693476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,790,096 - 165,988,009 (-)Ensembl
RefSeq Acc Id: ENST00000693627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6165,918,211 - 165,988,117 (-)Ensembl
RefSeq Acc Id: NR_026860
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386165,939,456 - 165,988,039 (-)NCBI
GRCh376166,337,536 - 166,401,527 (-)RGD
Celera6167,077,057 - 167,141,065 (-)RGD
HuRef6163,801,223 - 163,866,470 (-)ENTREZGENE
CHM1_16166,617,178 - 166,665,755 (-)NCBI
T2T-CHM13v2.06167,307,629 - 167,356,308 (-)NCBI
Sequence:
RefSeq Acc Id: NR_026861
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386165,924,048 - 165,988,039 (-)NCBI
GRCh376166,337,536 - 166,401,527 (-)RGD
Celera6167,077,057 - 167,141,065 (-)RGD
HuRef6163,801,223 - 163,866,470 (-)ENTREZGENE
CHM1_16166,601,769 - 166,665,755 (-)NCBI
T2T-CHM13v2.06167,292,278 - 167,356,308 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein A8K010 (Get FASTA)   NCBI Sequence Viewer  
  BAF82064 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSP00000498124   ⟸   ENST00000580695
RefSeq Acc Id: ENSP00000497277   ⟸   ENST00000648917
RefSeq Acc Id: ENSP00000497392   ⟸   ENST00000648884
RefSeq Acc Id: ENSP00000497558   ⟸   ENST00000649247
RefSeq Acc Id: ENSP00000496879   ⟸   ENST00000649273
RefSeq Acc Id: ENSP00000355847   ⟸   ENST00000366882
RefSeq Acc Id: ENSP00000478556   ⟸   ENST00000616273
RefSeq Acc Id: ENSP00000438284   ⟸   ENST00000539869
RefSeq Acc Id: ENSP00000497930   ⟸   ENST00000647768
RefSeq Acc Id: ENSP00000497062   ⟸   ENST00000647590
RefSeq Acc Id: ENSP00000500351   ⟸   ENST00000672902
RefSeq Acc Id: ENSP00000500900   ⟸   ENST00000672859
RefSeq Acc Id: ENSP00000497085   ⟸   ENST00000647837
RefSeq Acc Id: ENSP00000504723   ⟸   ENST00000676767
RefSeq Acc Id: ENSP00000504611   ⟸   ENST00000676766
RefSeq Acc Id: ENSP00000503041   ⟸   ENST00000678462
RefSeq Acc Id: ENSP00000503721   ⟸   ENST00000678161

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A8K010-F1-model_v2 AlphaFold A8K010 1-186 view protein structure

Promoters
RGD ID:6804636
Promoter ID:HG_KWN:55741
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:NR_026861,   OTTHUMT00000043036
Position:
Human AssemblyChrPosition (strand)Source
Build 366166,321,126 - 166,321,626 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC LINC00473 COSMIC
Ensembl Genes ENSG00000112541 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000455853 ENTREZGENE
GTEx ENSG00000112541 GTEx
HGNC ID HGNC:21160 ENTREZGENE
Human Proteome Map LINC00473 Human Proteome Map
NCBI Gene 90632 ENTREZGENE
PharmGKB PA134889928 PharmGKB
RNAcentral URS000075A350 RNACentral
  URS000075D5B0 RNACentral
UniProt A8K010 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-13 LINC00473  long intergenic non-protein coding RNA 473  C6orf176  chromosome 6 open reading frame 176  Symbol and/or name change 5135510 APPROVED