ABCD1P3 (ATP binding cassette subfamily D member 1 pseudogene 3) - Rat Genome Database

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Gene: ABCD1P3 (ATP binding cassette subfamily D member 1 pseudogene 3) Homo sapiens
Analyze
Symbol: ABCD1P3
Name: ATP binding cassette subfamily D member 1 pseudogene 3
RGD ID: 1342564
HGNC Page HGNC:64
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ABCD1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381632,474,823 - 32,475,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,475,051 - 32,478,250 (-)EnsemblGRCh38hg38GRCh38
GRCh371632,486,144 - 32,487,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361632,393,845 - 32,394,637 (-)NCBINCBI36Build 36hg18NCBI36
Celera1630,805,852 - 30,806,644 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,729,199 - 29,729,991 (-)NCBIHuRef
CHM1_11633,805,628 - 33,806,420 (-)NCBICHM1_1
T2T-CHM13v2.01632,890,797 - 32,891,781 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9215666  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:283
Interacting mature miRNAs:289
Transcripts:ENST00000562927
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 1 1 7 5
Below cutoff 58 74 36 11 73 3 109 52 66 8 99 38 8 15 81

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000562927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,475,051 - 32,478,250 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ABCD1P3 COSMIC
Ensembl Genes ENSG00000261233 Ensembl
GTEx ENSG00000261233 GTEx
HGNC ID HGNC:64 ENTREZGENE
Human Proteome Map ABCD1P3 Human Proteome Map
NCBI Gene 26982 ENTREZGENE
PharmGKB PA24399 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 ABCD1P3  ATP binding cassette subfamily D member 1 pseudogene 3    ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 3  Symbol and/or name change 5135510 APPROVED