Or6c88c-ps1 (olfactory receptor family 6 subfamily C member 88C, pseudogene 1) - Rat Genome Database

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Gene: Or6c88c-ps1 (olfactory receptor family 6 subfamily C member 88C, pseudogene 1) Rattus norvegicus
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Symbol: Or6c88c-ps1
Name: olfactory receptor family 6 subfamily C member 88C, pseudogene 1
RGD ID: 1332999
Description: olfactory receptor pseudogene
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC108348037; olfactory receptor 6C2-like; olfactory receptor pseudogene 980; Olr980-ps
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr875,075,147 - 5,076,308 (-)NCBIGRCr8
mRatBN7.274,420,791 - 4,421,952 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx77,271,208 - 7,272,370 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.079,146,903 - 9,148,065 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
Rnor_6.074,182,563 - 4,183,525 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.075,019,738 - 5,020,247 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.475,779,166 - 5,780,127 (-)ENTREZGENERGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.175,779,066 - 5,780,227 (-)NCBI
Celera72,638,124 - 2,639,085 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Or6c88c-ps1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_593253
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.075,023,522 - 5,024,199 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35194 BioCyc
NCBI Gene 404930 ENTREZGENE
PhenoGen Or6c88c-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c88c-ps1  olfactory receptor family 6 subfamily C member 88C, pseudogene 1  Olr980-ps  olfactory receptor pseudogene 980  Symbol and Name Changed 1299863 APPROVED
2021-03-09 Olr980-ps  olfactory receptor pseudogene 980  LOC108348037  olfactory receptor 6C2-like  Data merged from RGD:11447214 737654 PROVISIONAL
2016-08-02 LOC108348037  olfactory receptor 6C2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-02-04 Olr980-ps  olfactory receptor pseudogene 980      Symbol and Name status set to approved 70820 APPROVED