USP28 (ubiquitin specific peptidase 28) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: USP28 (ubiquitin specific peptidase 28) Homo sapiens
Analyze
Symbol: USP28
Name: ubiquitin specific peptidase 28
RGD ID: 1323075
HGNC Page HGNC:12625
Description: Enables cysteine-type deubiquitinase activity. Involved in several processes, including cellular response to UV; intracellular signal transduction; and response to ionizing radiation. Located in nuclear body. Part of protein-containing complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: deubiquitinating enzyme 28; KIAA1515; ubiquitin carboxyl-terminal hydrolase 28; ubiquitin carboxyl-terminal hydrolase 28 variant 1; ubiquitin specific protease 28; ubiquitin thioesterase 28; ubiquitin thiolesterase 28; ubiquitin-specific-processing protease 28
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,797,875 - 113,875,572 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,797,874 - 113,875,572 (-)EnsemblGRCh38hg38GRCh38
GRCh3711113,668,597 - 113,746,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,173,807 - 113,251,466 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411113,173,807 - 113,251,466NCBI
Celera11110,821,475 - 110,899,132 (-)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,597,124 - 109,674,696 (-)NCBIHuRef
CHM1_111113,551,888 - 113,629,830 (-)NCBICHM1_1
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA)
nuclear body  (IDA)
nucleoplasm  (IDA,IEA,TAS)
nucleus  (IBA,IEA)
protein-containing complex  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10819331   PMID:11597335   PMID:12477932   PMID:12838346   PMID:14702039   PMID:16344560   PMID:16901786   PMID:17558397   PMID:17873522   PMID:18029348   PMID:18662541   PMID:19322201  
PMID:19615732   PMID:21873635   PMID:22118674   PMID:22144179   PMID:22626734   PMID:22939629   PMID:23389829   PMID:23449389   PMID:23508102   PMID:23832602   PMID:24075993   PMID:24347490  
PMID:24623306   PMID:24687851   PMID:24960159   PMID:25260751   PMID:25359778   PMID:25437563   PMID:25609649   PMID:25656529   PMID:25716680   PMID:26186194   PMID:26209720   PMID:26268556  
PMID:26496610   PMID:26514267   PMID:27371829   PMID:27432896   PMID:27432897   PMID:27546791   PMID:28514442   PMID:28515325   PMID:28986522   PMID:29089421   PMID:29131570   PMID:29545478  
PMID:29576527   PMID:29656893   PMID:29880484   PMID:30206969   PMID:30410068   PMID:30413534   PMID:30543854   PMID:30622440   PMID:30635654   PMID:30881015   PMID:30910399   PMID:30926242  
PMID:30926243   PMID:31604991   PMID:31833203   PMID:31938050   PMID:31982308   PMID:32053284   PMID:32128997   PMID:32416067   PMID:32453962   PMID:32578360   PMID:32963944   PMID:33060197  
PMID:33606978   PMID:33640491   PMID:33664871   PMID:33669244   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34106567   PMID:34129829   PMID:34226595   PMID:34584067   PMID:34591612  
PMID:34709727   PMID:34822842   PMID:34962618   PMID:35156780   PMID:35326457   PMID:35364627   PMID:35439318   PMID:35509820   PMID:35742816   PMID:35880246   PMID:35914814   PMID:35944360  
PMID:36424410   PMID:36442624   PMID:36602428   PMID:37230388   PMID:37450415   PMID:38227944   PMID:38498222   PMID:38547292  


Genomics

Comparative Map Data
USP28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,797,875 - 113,875,572 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,797,874 - 113,875,572 (-)EnsemblGRCh38hg38GRCh38
GRCh3711113,668,597 - 113,746,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,173,807 - 113,251,466 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411113,173,807 - 113,251,466NCBI
Celera11110,821,475 - 110,899,132 (-)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,597,124 - 109,674,696 (-)NCBIHuRef
CHM1_111113,551,888 - 113,629,830 (-)NCBICHM1_1
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBIT2T-CHM13v2.0
Usp28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,896,577 - 48,953,817 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,896,675 - 48,953,817 (+)EnsemblGRCm39 Ensembl
GRCm38948,985,319 - 49,042,517 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,985,375 - 49,042,517 (+)EnsemblGRCm38mm10GRCm38
MGSCv37948,793,490 - 48,850,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,737,317 - 48,794,449 (+)NCBIMGSCv36mm8
Celera946,282,655 - 46,339,797 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.56NCBI
Usp28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,222,258 - 58,282,711 (+)NCBIGRCr8
mRatBN7.2849,325,766 - 49,386,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,325,867 - 49,386,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx854,831,791 - 54,892,095 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,110,659 - 53,170,968 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,974,908 - 51,035,219 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,295,188 - 53,355,572 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,295,222 - 53,355,572 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0851,909,256 - 51,969,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,245,642 - 52,305,922 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,280,014 - 52,324,051 (+)NCBI
Celera848,883,162 - 48,943,411 (+)NCBICelera
Cytogenetic Map8q23NCBI
Usp28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,426,159 - 15,443,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,425,136 - 15,469,819 (-)NCBIChiLan1.0ChiLan1.0
USP28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,541,035 - 114,618,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,635,396 - 115,713,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,676,566 - 108,754,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,519,147 - 112,595,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,517,693 - 112,595,585 (-)Ensemblpanpan1.1panPan2
USP28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,431,313 - 19,480,709 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,435,451 - 19,479,640 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,338,576 - 19,404,153 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,435,675 - 19,501,359 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,437,389 - 19,501,355 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,499,600 - 19,565,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,400,925 - 19,465,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,448,052 - 19,514,120 (+)NCBIUU_Cfam_GSD_1.0
Usp28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,900,690 - 95,962,848 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612742,725 - 804,921 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936612742,777 - 804,919 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,417,564 - 41,480,994 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,417,560 - 41,481,044 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,178,504 - 46,217,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,175,116 - 105,257,163 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,175,067 - 105,257,102 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604320,764,288 - 20,844,351 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,303,745 - 9,378,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247849,302,741 - 9,352,127 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP28
43 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q23.2-23.3(chr11:113444446-120648921)x3 copy number gain See cases [RCV000050627] Chr11:113444446..120648921 [GRCh38]
Chr11:113315168..120519630 [GRCh37]
Chr11:112820378..120024840 [NCBI36]
Chr11:11q23.2-23.3		 pathogenic
GRCh38/hg38 11q22.1-25(chr11:100348599-135040246)x3 copy number gain See cases [RCV000053638] Chr11:100348599..135040246 [GRCh38]
Chr11:100219331..134910140 [GRCh37]
Chr11:99724541..134415350 [NCBI36]
Chr11:11q22.1-25		 pathogenic
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3		 pathogenic
NM_001346252.4(USP28):c.571C>T (p.Leu191Phe) single nucleotide variant Malignant tumor of prostate [RCV000149276] Chr11:113834299 [GRCh38]
Chr11:113705021 [GRCh37]
Chr11:11q23.2		 pathogenic|uncertain significance
GRCh38/hg38 11q23.2-25(chr11:112864326-131189315)x3 copy number gain See cases [RCV000137582] Chr11:112864326..131189315 [GRCh38]
Chr11:112832130..131059210 [GRCh37]
Chr11:112240259..130564420 [NCBI36]
Chr11:11q23.2-25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
NM_001346252.4(USP28):c.2985G>C (p.Met995Ile) single nucleotide variant not specified [RCV004321676] Chr11:113803221 [GRCh38]
Chr11:113673943 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.218C>G (p.Thr73Arg) single nucleotide variant not specified [RCV004327027] Chr11:113852551 [GRCh38]
Chr11:113723273 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2998C>T (p.Arg1000Trp) single nucleotide variant not specified [RCV004320244] Chr11:113803208 [GRCh38]
Chr11:113673930 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1350A>T (p.Glu450Asp) single nucleotide variant not specified [RCV004319258] Chr11:113817771 [GRCh38]
Chr11:113688493 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2023G>A (p.Val675Met) single nucleotide variant not specified [RCV004289362] Chr11:113809204 [GRCh38]
Chr11:113679926 [GRCh37]
Chr11:11q23.2		 uncertain significance
GRCh37/hg19 11q13.4-23.3(chr11:71588805-116680918)x3 copy number gain not provided [RCV000683374] Chr11:71588805..116680918 [GRCh37]
Chr11:11q13.4-23.3		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
NM_001346252.4(USP28):c.3102A>T (p.Val1034=) single nucleotide variant not provided [RCV000969071] Chr11:113801625 [GRCh38]
Chr11:113672347 [GRCh37]
Chr11:11q23.2		 benign
NM_001346252.4(USP28):c.3260G>A (p.Cys1087Tyr) single nucleotide variant not specified [RCV004311084] Chr11:113799400 [GRCh38]
Chr11:113670122 [GRCh37]
Chr11:11q23.2		 uncertain significance
GRCh37/hg19 11q22.3-23.3(chr11:105699599-114524876)x1 copy number loss not provided [RCV001006445] Chr11:105699599..114524876 [GRCh37]
Chr11:11q22.3-23.3		 pathogenic
GRCh37/hg19 11q22.3-23.3(chr11:104101411-116680918)x1 copy number loss not provided [RCV000848741] Chr11:104101411..116680918 [GRCh37]
Chr11:11q22.3-23.3		 pathogenic
GRCh37/hg19 11q22.3-23.2(chr11:103320065-114349787)x1 copy number loss not provided [RCV001006439] Chr11:103320065..114349787 [GRCh37]
Chr11:11q22.3-23.2		 pathogenic
GRCh37/hg19 11q23.1-23.3(chr11:110969076-114578509)x1 copy number loss not provided [RCV000848936] Chr11:110969076..114578509 [GRCh37]
Chr11:11q23.1-23.3		 uncertain significance
NM_001346252.4(USP28):c.506A>G (p.Asn169Ser) single nucleotide variant not specified [RCV004284194] Chr11:113840626 [GRCh38]
Chr11:113711348 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.44A>T (p.Asp15Val) single nucleotide variant not specified [RCV004326941] Chr11:113875458 [GRCh38]
Chr11:113746180 [GRCh37]
Chr11:11q23.2		 uncertain significance
GRCh37/hg19 11q23.2(chr11:113665729-113872869)x3 copy number gain not provided [RCV001258501] Chr11:113665729..113872869 [GRCh37]
Chr11:11q23.2		 likely benign
NC_000011.9:g.104288964_134937416dup duplication Distal trisomy 11q [RCV001250234] Chr11:104288964..134937416 [GRCh37]
Chr11:11q22.3-25		 pathogenic
GRCh37/hg19 11q23.1-24.3(chr11:112375478-128785742)x3 copy number gain not provided [RCV001829187] Chr11:112375478..128785742 [GRCh37]
Chr11:11q23.1-24.3		 pathogenic
GRCh37/hg19 11q14.1-23.3(chr11:85422071-118022671)x1 copy number loss not provided [RCV001832892] Chr11:85422071..118022671 [GRCh37]
Chr11:11q14.1-23.3		 uncertain significance
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25		 pathogenic
GRCh37/hg19 11q22.3-23.3(chr11:109328787-116414966)x1 copy number loss not provided [RCV002474547] Chr11:109328787..116414966 [GRCh37]
Chr11:11q22.3-23.3		 pathogenic
NM_001346252.4(USP28):c.1719G>A (p.Met573Ile) single nucleotide variant not specified [RCV004088316] Chr11:113813909 [GRCh38]
Chr11:113684631 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1564A>G (p.Met522Val) single nucleotide variant not specified [RCV004113899] Chr11:113815282 [GRCh38]
Chr11:113686004 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1223A>C (p.Lys408Thr) single nucleotide variant not specified [RCV004089977] Chr11:113823665 [GRCh38]
Chr11:113694387 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.247G>T (p.Ala83Ser) single nucleotide variant not specified [RCV004152058] Chr11:113852522 [GRCh38]
Chr11:113723244 [GRCh37]
Chr11:11q23.2		 uncertain significance
GRCh37/hg19 11q23.2(chr11:113675419-113760958)x1 copy number loss not provided [RCV002475570] Chr11:113675419..113760958 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2795C>T (p.Ala932Val) single nucleotide variant not specified [RCV004187198] Chr11:113804722 [GRCh38]
Chr11:113675444 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.3016G>A (p.Val1006Met) single nucleotide variant not specified [RCV004110923] Chr11:113803190 [GRCh38]
Chr11:113673912 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.3310G>A (p.Val1104Ile) single nucleotide variant not specified [RCV004081983] Chr11:113799350 [GRCh38]
Chr11:113670072 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2045A>G (p.Gln682Arg) single nucleotide variant not specified [RCV004209538] Chr11:113809182 [GRCh38]
Chr11:113679904 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.611G>A (p.Arg204Gln) single nucleotide variant not specified [RCV004176439] Chr11:113834259 [GRCh38]
Chr11:113704981 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2567C>T (p.Ser856Phe) single nucleotide variant not specified [RCV004213963] Chr11:113806508 [GRCh38]
Chr11:113677230 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2001G>A (p.Met667Ile) single nucleotide variant not specified [RCV004226427] Chr11:113809226 [GRCh38]
Chr11:113679948 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.3268G>C (p.Glu1090Gln) single nucleotide variant not specified [RCV004112200] Chr11:113799392 [GRCh38]
Chr11:113670114 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1402C>A (p.His468Asn) single nucleotide variant not specified [RCV004193344] Chr11:113817719 [GRCh38]
Chr11:113688441 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2264G>A (p.Arg755His) single nucleotide variant not specified [RCV004075507] Chr11:113808338 [GRCh38]
Chr11:113679060 [GRCh37]
Chr11:11q23.2		 likely benign
NM_001346252.4(USP28):c.274A>G (p.Ile92Val) single nucleotide variant not specified [RCV004221272] Chr11:113841763 [GRCh38]
Chr11:113712485 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.32C>T (p.Ala11Val) single nucleotide variant not specified [RCV004069547] Chr11:113875470 [GRCh38]
Chr11:113746192 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2999G>A (p.Arg1000Gln) single nucleotide variant not specified [RCV004172440] Chr11:113803207 [GRCh38]
Chr11:113673929 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2165A>G (p.Glu722Gly) single nucleotide variant not specified [RCV004264253] Chr11:113808437 [GRCh38]
Chr11:113679159 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1556G>A (p.Arg519Gln) single nucleotide variant not specified [RCV004267162] Chr11:113815290 [GRCh38]
Chr11:113686012 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2069A>G (p.Gln690Arg) single nucleotide variant not specified [RCV004251953] Chr11:113809158 [GRCh38]
Chr11:113679880 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.3008A>T (p.Lys1003Ile) single nucleotide variant not specified [RCV004285013] Chr11:113803198 [GRCh38]
Chr11:113673920 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.148G>T (p.Asp50Tyr) single nucleotide variant not specified [RCV004260102] Chr11:113852621 [GRCh38]
Chr11:113723343 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.217A>G (p.Thr73Ala) single nucleotide variant not specified [RCV004274244] Chr11:113852552 [GRCh38]
Chr11:113723274 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.619A>G (p.Thr207Ala) single nucleotide variant not specified [RCV004254683] Chr11:113834251 [GRCh38]
Chr11:113704973 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2509A>T (p.Met837Leu) single nucleotide variant not specified [RCV004257376] Chr11:113806566 [GRCh38]
Chr11:113677288 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.93C>G (p.Ile31Met) single nucleotide variant not specified [RCV004248065] Chr11:113854300 [GRCh38]
Chr11:113725022 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2871C>A (p.Phe957Leu) single nucleotide variant not specified [RCV004355031] Chr11:113803851 [GRCh38]
Chr11:113674573 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.310G>A (p.Ala104Thr) single nucleotide variant not specified [RCV004359650] Chr11:113841727 [GRCh38]
Chr11:113712449 [GRCh37]
Chr11:11q23.2		 uncertain significance
Single allele duplication not provided [RCV003448710] Chr11:102134973..134945611 [GRCh37]
Chr11:11q22.2-25		 pathogenic
NM_001346252.4(USP28):c.1023T>G (p.Leu341=) single nucleotide variant not provided [RCV003398136] Chr11:113829233 [GRCh38]
Chr11:113699955 [GRCh37]
Chr11:11q23.2		 likely benign
NM_001346252.4(USP28):c.1667T>C (p.Ile556Thr) single nucleotide variant not specified [RCV004484698] Chr11:113815179 [GRCh38]
Chr11:113685901 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1033G>A (p.Asp345Asn) single nucleotide variant not specified [RCV004484692] Chr11:113829223 [GRCh38]
Chr11:113699945 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.109C>T (p.Pro37Ser) single nucleotide variant not specified [RCV004484694] Chr11:113854284 [GRCh38]
Chr11:113725006 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1270C>G (p.Gln424Glu) single nucleotide variant not specified [RCV004484695] Chr11:113823618 [GRCh38]
Chr11:113694340 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1406T>C (p.Met469Thr) single nucleotide variant not specified [RCV004484696] Chr11:113817715 [GRCh38]
Chr11:113688437 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1472C>T (p.Thr491Ile) single nucleotide variant not specified [RCV004484697] Chr11:113815374 [GRCh38]
Chr11:113686096 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.218C>T (p.Thr73Ile) single nucleotide variant not specified [RCV004484702] Chr11:113852551 [GRCh38]
Chr11:113723273 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2216C>T (p.Ala739Val) single nucleotide variant not specified [RCV004484703] Chr11:113808386 [GRCh38]
Chr11:113679108 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.265G>A (p.Ala89Thr) single nucleotide variant not specified [RCV004484704] Chr11:113852504 [GRCh38]
Chr11:113723226 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2989G>A (p.Gly997Arg) single nucleotide variant not specified [RCV004484705] Chr11:113803217 [GRCh38]
Chr11:113673939 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.3032G>A (p.Arg1011Gln) single nucleotide variant not specified [RCV004484706] Chr11:113803174 [GRCh38]
Chr11:113673896 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.406C>T (p.Arg136Cys) single nucleotide variant not specified [RCV004484707] Chr11:113840726 [GRCh38]
Chr11:113711448 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.592A>C (p.Asn198His) single nucleotide variant not specified [RCV004484708] Chr11:113834278 [GRCh38]
Chr11:113705000 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.695T>C (p.Phe232Ser) single nucleotide variant not specified [RCV004484710] Chr11:113833484 [GRCh38]
Chr11:113704206 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.696T>G (p.Phe232Leu) single nucleotide variant not specified [RCV004484711] Chr11:113833483 [GRCh38]
Chr11:113704205 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1790A>C (p.Asn597Thr) single nucleotide variant not specified [RCV004484699] Chr11:113812458 [GRCh38]
Chr11:113683180 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.1829G>A (p.Arg610Gln) single nucleotide variant not specified [RCV004484700] Chr11:113812419 [GRCh38]
Chr11:113683141 [GRCh37]
Chr11:11q23.2		 uncertain significance
NM_001346252.4(USP28):c.2060G>A (p.Arg687Gln) single nucleotide variant not specified [RCV004484701] Chr11:113809167 [GRCh38]
Chr11:113679889 [GRCh37]
Chr11:11q23.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4458
Count of miRNA genes:1160
Interacting mature miRNAs:1446
Transcripts:ENST00000003302, ENST00000260188, ENST00000535607, ENST00000537490, ENST00000537642, ENST00000537706, ENST00000538224, ENST00000538475, ENST00000540438, ENST00000540925, ENST00000542033, ENST00000544272, ENST00000544750, ENST00000544967, ENST00000545540, ENST00000545608
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1456 1626 623 153 1067 61 1979 1839 1038 189 1210 879 106 1 127 1595 4 2
Low 983 1340 1103 471 858 404 2378 356 2693 230 250 734 69 1077 1193 2
Below cutoff 25 25 2 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_051668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_174609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF266283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP003170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF434481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU940680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD704003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB061316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF445045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF584159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000003302   ⟹   ENSP00000003302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,797,874 - 113,875,570 (-)Ensembl
RefSeq Acc Id: ENST00000535607   ⟹   ENSP00000437688
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,817,706 - 113,833,517 (-)Ensembl
RefSeq Acc Id: ENST00000537490   ⟹   ENSP00000445722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,817,831 - 113,830,976 (-)Ensembl
RefSeq Acc Id: ENST00000537642   ⟹   ENSP00000440799
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,829,221 - 113,875,496 (-)Ensembl
RefSeq Acc Id: ENST00000537706   ⟹   ENSP00000445743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,813,755 - 113,875,528 (-)Ensembl
RefSeq Acc Id: ENST00000538224   ⟹   ENSP00000440260
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,804,928 - 113,809,175 (-)Ensembl
RefSeq Acc Id: ENST00000538475   ⟹   ENSP00000442257
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,812,279 - 113,833,470 (-)Ensembl
RefSeq Acc Id: ENST00000540438   ⟹   ENSP00000441513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,799,062 - 113,875,566 (-)Ensembl
RefSeq Acc Id: ENST00000540925   ⟹   ENSP00000446284
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,852,527 - 113,875,536 (-)Ensembl
RefSeq Acc Id: ENST00000542033
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,830,883 - 113,875,533 (-)Ensembl
RefSeq Acc Id: ENST00000544272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,798,979 - 113,801,701 (-)Ensembl
RefSeq Acc Id: ENST00000544750   ⟹   ENSP00000437450
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,852,622 - 113,875,533 (-)Ensembl
RefSeq Acc Id: ENST00000544967   ⟹   ENSP00000442431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,798,092 - 113,829,467 (-)Ensembl
RefSeq Acc Id: ENST00000545540   ⟹   ENSP00000444991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,798,805 - 113,875,570 (-)Ensembl
RefSeq Acc Id: ENST00000545608   ⟹   ENSP00000438050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,815,264 - 113,833,552 (-)Ensembl
RefSeq Acc Id: ENST00000696972   ⟹   ENSP00000513008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,798,102 - 113,875,570 (-)Ensembl
RefSeq Acc Id: ENST00000696973   ⟹   ENSP00000513009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,797,875 - 113,875,572 (-)Ensembl
RefSeq Acc Id: NM_001301029   ⟹   NP_001287958
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
CHM1_111113,551,888 - 113,629,866 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346252   ⟹   NP_001333181
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346253   ⟹   NP_001333182
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346254   ⟹   NP_001333183
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346255   ⟹   NP_001333184
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346257   ⟹   NP_001333186
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346258   ⟹   NP_001333187
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346259   ⟹   NP_001333188
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346260   ⟹   NP_001333189
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346261   ⟹   NP_001333190
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346262   ⟹   NP_001333191
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346263   ⟹   NP_001333192
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346264   ⟹   NP_001333193
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346265   ⟹   NP_001333194
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346267   ⟹   NP_001333196
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346268   ⟹   NP_001333197
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346269   ⟹   NP_001333198
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346270   ⟹   NP_001333199
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346271   ⟹   NP_001333200
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346272   ⟹   NP_001333201
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346273   ⟹   NP_001333202
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,813,755 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,824,088 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001400784   ⟹   NP_001387713
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400785   ⟹   NP_001387714
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400786   ⟹   NP_001387715
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400787   ⟹   NP_001387716
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400788   ⟹   NP_001387717
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400789   ⟹   NP_001387718
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400790   ⟹   NP_001387719
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400791   ⟹   NP_001387720
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400792   ⟹   NP_001387721
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400793   ⟹   NP_001387722
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400794   ⟹   NP_001387723
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,813,755 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,824,088 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400795   ⟹   NP_001387724
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400796   ⟹   NP_001387725
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400797   ⟹   NP_001387726
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400799   ⟹   NP_001387728
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400800   ⟹   NP_001387729
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400801   ⟹   NP_001387730
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400802   ⟹   NP_001387731
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400803   ⟹   NP_001387732
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400804   ⟹   NP_001387733
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400805   ⟹   NP_001387734
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400806   ⟹   NP_001387735
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400807   ⟹   NP_001387736
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400809   ⟹   NP_001387738
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400810   ⟹   NP_001387739
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400811   ⟹   NP_001387740
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400812   ⟹   NP_001387741
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_001400813   ⟹   NP_001387742
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
RefSeq Acc Id: NM_020886   ⟹   NP_065937
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
GRCh3711113,668,597 - 113,746,292 (-)NCBI
Build 3611113,173,807 - 113,251,466 (-)NCBI Archive
Celera11110,821,475 - 110,899,132 (-)RGD
HuRef11109,597,124 - 109,674,696 (-)ENTREZGENE
CHM1_111113,551,888 - 113,629,866 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Sequence:
RefSeq Acc Id: NR_174609
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,797,875 - 113,875,572 (-)NCBI
T2T-CHM13v2.011113,808,211 - 113,885,899 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001287958 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333181 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333182 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333183 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333184 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333186 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333187 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333188 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333189 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333190 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333191 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333192 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333193 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333194 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333196 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333197 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333198 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333199 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333200 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333201 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333202 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387713 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387714 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387715 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387716 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387717 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387718 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387719 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387720 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387721 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387722 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387723 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387724 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387725 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387726 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387728 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387729 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387730 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387732 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387733 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387734 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387735 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387736 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387738 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387739 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387740 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387741 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387742 (Get FASTA)   NCBI Sequence Viewer  
  NP_065937 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH65928 (Get FASTA)   NCBI Sequence Viewer  
  AAK58565 (Get FASTA)   NCBI Sequence Viewer  
  ACA06098 (Get FASTA)   NCBI Sequence Viewer  
  ACA06099 (Get FASTA)   NCBI Sequence Viewer  
  BAA96039 (Get FASTA)   NCBI Sequence Viewer  
  BAB55172 (Get FASTA)   NCBI Sequence Viewer  
  BAG65214 (Get FASTA)   NCBI Sequence Viewer  
  BAG65525 (Get FASTA)   NCBI Sequence Viewer  
  CCQ43656 (Get FASTA)   NCBI Sequence Viewer  
  EAW67231 (Get FASTA)   NCBI Sequence Viewer  
  EAW67232 (Get FASTA)   NCBI Sequence Viewer  
  EAW67233 (Get FASTA)   NCBI Sequence Viewer  
  EAW67234 (Get FASTA)   NCBI Sequence Viewer  
  EAW67235 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000003302
  ENSP00000003302.4
  ENSP00000437450.1
  ENSP00000437688.1
  ENSP00000438050.1
  ENSP00000440260.1
  ENSP00000440799.1
  ENSP00000441513.1
  ENSP00000442257.1
  ENSP00000442431
  ENSP00000442431.1
  ENSP00000444991
  ENSP00000444991.1
  ENSP00000445722.1
  ENSP00000445743
  ENSP00000445743.1
  ENSP00000446284.1
  ENSP00000513008.1
  ENSP00000513009
  ENSP00000513009.1
GenBank Protein Q96RU2 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_065937   ⟸   NM_020886
- Peptide Label: isoform a
- UniProtKB: Q6NZX9 (UniProtKB/Swiss-Prot),   B0YJC1 (UniProtKB/Swiss-Prot),   B0YJC0 (UniProtKB/Swiss-Prot),   Q9P213 (UniProtKB/Swiss-Prot),   Q96RU2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287958   ⟸   NM_001301029
- Peptide Label: isoform b
- UniProtKB: B4E3L3 (UniProtKB/TrEMBL),   G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333197   ⟸   NM_001346268
- Peptide Label: isoform o
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333190   ⟸   NM_001346261
- Peptide Label: isoform k
- Sequence:
RefSeq Acc Id: NP_001333198   ⟸   NM_001346269
- Peptide Label: isoform p
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333189   ⟸   NM_001346260
- Peptide Label: isoform j
- Sequence:
RefSeq Acc Id: NP_001333201   ⟸   NM_001346272
- Peptide Label: isoform q
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333188   ⟸   NM_001346259
- Peptide Label: isoform i
- Sequence:
RefSeq Acc Id: NP_001333186   ⟸   NM_001346257
- Peptide Label: isoform g
- Sequence:
RefSeq Acc Id: NP_001333182   ⟸   NM_001346253
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001333191   ⟸   NM_001346262
- Peptide Label: isoform b
- UniProtKB: B4E3L3 (UniProtKB/TrEMBL),   G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333196   ⟸   NM_001346267
- Peptide Label: isoform o
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333193   ⟸   NM_001346264
- Peptide Label: isoform m
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333192   ⟸   NM_001346263
- Peptide Label: isoform l
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333187   ⟸   NM_001346258
- Peptide Label: isoform h
- UniProtKB: Q96RU2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001333181   ⟸   NM_001346252
- Peptide Label: isoform c
- UniProtKB: A0A8V8TLZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333200   ⟸   NM_001346271
- Peptide Label: isoform p
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333194   ⟸   NM_001346265
- Peptide Label: isoform n
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333183   ⟸   NM_001346254
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: NP_001333184   ⟸   NM_001346255
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001333199   ⟸   NM_001346270
- Peptide Label: isoform p
- UniProtKB: G3V1N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333202   ⟸   NM_001346273
- Peptide Label: isoform r
- UniProtKB: Q96RU2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000003302   ⟸   ENST00000003302
RefSeq Acc Id: ENSP00000442431   ⟸   ENST00000544967
RefSeq Acc Id: ENSP00000437450   ⟸   ENST00000544750
RefSeq Acc Id: ENSP00000438050   ⟸   ENST00000545608
RefSeq Acc Id: ENSP00000444991   ⟸   ENST00000545540
RefSeq Acc Id: ENSP00000437688   ⟸   ENST00000535607
RefSeq Acc Id: ENSP00000445743   ⟸   ENST00000537706
RefSeq Acc Id: ENSP00000440799   ⟸   ENST00000537642
RefSeq Acc Id: ENSP00000445722   ⟸   ENST00000537490
RefSeq Acc Id: ENSP00000440260   ⟸   ENST00000538224
RefSeq Acc Id: ENSP00000442257   ⟸   ENST00000538475
RefSeq Acc Id: ENSP00000441513   ⟸   ENST00000540438
RefSeq Acc Id: ENSP00000446284   ⟸   ENST00000540925
RefSeq Acc Id: NP_001387736   ⟸   NM_001400807
- Peptide Label: isoform 35
RefSeq Acc Id: NP_001387738   ⟸   NM_001400809
- Peptide Label: isoform 40
RefSeq Acc Id: NP_001387742   ⟸   NM_001400813
- Peptide Label: isoform 36
RefSeq Acc Id: NP_001387728   ⟸   NM_001400799
- Peptide Label: isoform 34
RefSeq Acc Id: NP_001387739   ⟸   NM_001400810
- Peptide Label: isoform 41
RefSeq Acc Id: NP_001387730   ⟸   NM_001400801
- Peptide Label: isoform 19
RefSeq Acc Id: NP_001387717   ⟸   NM_001400788
- Peptide Label: isoform 24
RefSeq Acc Id: NP_001387722   ⟸   NM_001400793
- Peptide Label: isoform 29
RefSeq Acc Id: NP_001387718   ⟸   NM_001400789
- Peptide Label: isoform 25
RefSeq Acc Id: NP_001387713   ⟸   NM_001400784
- Peptide Label: isoform 20
RefSeq Acc Id: NP_001387734   ⟸   NM_001400805
- Peptide Label: isoform 38
RefSeq Acc Id: NP_001387729   ⟸   NM_001400800
- Peptide Label: isoform 35
RefSeq Acc Id: NP_001387720   ⟸   NM_001400791
- Peptide Label: isoform 27
RefSeq Acc Id: NP_001387719   ⟸   NM_001400790
- Peptide Label: isoform 26
RefSeq Acc Id: NP_001387731   ⟸   NM_001400802
- Peptide Label: isoform 19
RefSeq Acc Id: NP_001387732   ⟸   NM_001400803
- Peptide Label: isoform 36
RefSeq Acc Id: NP_001387721   ⟸   NM_001400792
- Peptide Label: isoform 28
RefSeq Acc Id: NP_001387715   ⟸   NM_001400786
- Peptide Label: isoform 22
RefSeq Acc Id: NP_001387741   ⟸   NM_001400812
- Peptide Label: isoform 42
RefSeq Acc Id: NP_001387735   ⟸   NM_001400806
- Peptide Label: isoform q
RefSeq Acc Id: NP_001387716   ⟸   NM_001400787
- Peptide Label: isoform 23
RefSeq Acc Id: NP_001387714   ⟸   NM_001400785
- Peptide Label: isoform 21
RefSeq Acc Id: NP_001387724   ⟸   NM_001400795
- Peptide Label: isoform 31
RefSeq Acc Id: NP_001387740   ⟸   NM_001400811
- Peptide Label: isoform 19
RefSeq Acc Id: NP_001387733   ⟸   NM_001400804
- Peptide Label: isoform 36
RefSeq Acc Id: NP_001387725   ⟸   NM_001400796
- Peptide Label: isoform 31
RefSeq Acc Id: NP_001387726   ⟸   NM_001400797
- Peptide Label: isoform 33
RefSeq Acc Id: NP_001387723   ⟸   NM_001400794
- Peptide Label: isoform 30
RefSeq Acc Id: ENSP00000513009   ⟸   ENST00000696973
RefSeq Acc Id: ENSP00000513008   ⟸   ENST00000696972
Protein Domains
UIM   USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96RU2-F1-model_v2 AlphaFold Q96RU2 1-1077 view protein structure

Promoters
RGD ID:6789592
Promoter ID:HG_KWN:14217
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000260188,   NM_020886,   UC001POI.1,   UC001POJ.2
Position:
Human AssemblyChrPosition (strand)Source
Build 3611113,251,176 - 113,252,442 (-)MPROMDB
RGD ID:7222165
Promoter ID:EPDNEW_H16829
Type:initiation region
Name:USP28_1
Description:ubiquitin specific peptidase 28
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811113,875,533 - 113,875,593EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12625 AgrOrtholog
COSMIC USP28 COSMIC
Ensembl Genes ENSG00000048028 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000003302 ENTREZGENE
  ENST00000003302.8 UniProtKB/Swiss-Prot
  ENST00000535607.5 UniProtKB/TrEMBL
  ENST00000537490.1 UniProtKB/TrEMBL
  ENST00000537642.1 UniProtKB/TrEMBL
  ENST00000537706 ENTREZGENE
  ENST00000537706.5 UniProtKB/Swiss-Prot
  ENST00000538224.1 UniProtKB/TrEMBL
  ENST00000538475.5 UniProtKB/TrEMBL
  ENST00000540438.5 UniProtKB/TrEMBL
  ENST00000540925.5 UniProtKB/TrEMBL
  ENST00000544750.1 UniProtKB/TrEMBL
  ENST00000544967 ENTREZGENE
  ENST00000544967.5 UniProtKB/TrEMBL
  ENST00000545540 ENTREZGENE
  ENST00000545540.5 UniProtKB/TrEMBL
  ENST00000545608.5 UniProtKB/TrEMBL
  ENST00000696972.1 UniProtKB/TrEMBL
  ENST00000696973 ENTREZGENE
  ENST00000696973.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1720 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000048028 GTEx
HGNC ID HGNC:12625 ENTREZGENE
Human Proteome Map USP28 Human Proteome Map
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:57646 UniProtKB/Swiss-Prot
NCBI Gene 57646 ENTREZGENE
OMIM 610748 OMIM
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37250 PharmGKB
PROSITE USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8V8TKW5_HUMAN UniProtKB/TrEMBL
  A0A8V8TLZ9 ENTREZGENE, UniProtKB/TrEMBL
  B0YJC0 ENTREZGENE
  B0YJC1 ENTREZGENE
  B4E3L3 ENTREZGENE, UniProtKB/TrEMBL
  F5GZ74_HUMAN UniProtKB/TrEMBL
  F5H2G4_HUMAN UniProtKB/TrEMBL
  F5H6Q3_HUMAN UniProtKB/TrEMBL
  G3V1N5 ENTREZGENE, UniProtKB/TrEMBL
  H0YFA0_HUMAN UniProtKB/TrEMBL
  H0YFD7_HUMAN UniProtKB/TrEMBL
  H0YFT9_HUMAN UniProtKB/TrEMBL
  H0YFX3_HUMAN UniProtKB/TrEMBL
  H0YG96_HUMAN UniProtKB/TrEMBL
  H0YH19_HUMAN UniProtKB/TrEMBL
  L8EA89_HUMAN UniProtKB/TrEMBL
  Q6NZX9 ENTREZGENE
  Q96RU2 ENTREZGENE
  Q9P213 ENTREZGENE
  UBP28_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B0YJC0 UniProtKB/Swiss-Prot
  B0YJC1 UniProtKB/Swiss-Prot
  Q6NZX9 UniProtKB/Swiss-Prot
  Q9P213 UniProtKB/Swiss-Prot