PPIAP58 (peptidylprolyl isomerase A pseudogene 58) - Rat Genome Database

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Gene: PPIAP58 (peptidylprolyl isomerase A pseudogene 58) Homo sapiens
Analyze
Symbol: PPIAP58
Name: peptidylprolyl isomerase A pseudogene 58
RGD ID: 13209073
HGNC Page HGNC:53682
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PPIA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381929,921,135 - 29,922,171 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1929,921,182 - 29,921,653 (+)EnsemblGRCh38hg38GRCh38
GRCh371930,412,042 - 30,413,078 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361935,103,929 - 35,104,408 (+)NCBINCBI36Build 36hg18NCBI36
Celera1927,105,723 - 27,106,453 (+)NCBICelera
Cytogenetic Map19q12NCBI
HuRef1926,919,424 - 26,920,467 (+)NCBIHuRef
CHM1_11930,412,399 - 30,413,442 (+)NCBICHM1_1
T2T-CHM13v2.01932,441,571 - 32,442,612 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:206
Count of miRNA genes:200
Interacting mature miRNAs:206
Transcripts:ENST00000585753
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 9 2 5 26 4 1 2 10 336 17 2
Below cutoff 283 296 246 63 154 42 543 187 501 93 181 273 23 137 335

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000585753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1929,921,182 - 29,921,653 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PPIAP58 COSMIC
Ensembl Genes ENSG00000267258 Ensembl, ENTREZGENE
GTEx ENSG00000267258 GTEx
HGNC ID HGNC:53682 ENTREZGENE
Human Proteome Map PPIAP58 Human Proteome Map
NCBI Gene PPIAP58 ENTREZGENE