TPST1 (tyrosylprotein sulfotransferase 1) - Rat Genome Database

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Gene: TPST1 (tyrosylprotein sulfotransferase 1) Homo sapiens
Analyze
Symbol: TPST1
Name: tyrosylprotein sulfotransferase 1
RGD ID: 1318261
HGNC Page HGNC:12020
Description: Enables protein homodimerization activity and protein-tyrosine sulfotransferase activity. Involved in post-translational protein modification. Located in Golgi membrane. Implicated in colorectal adenocarcinoma.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein-tyrosine sulfotransferase 1; TANGO13A; TPST-1; transport and golgi organization 13 homolog A; tyrosylprotein sulfotransferase-1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,198,790 - 66,360,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,205,317 - 66,420,543 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,670,321 - 65,825,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,307,750 - 65,462,865 (+)NCBINCBI36Build 36hg18NCBI36
Build 34765,114,463 - 65,269,579NCBI
Celera766,288,228 - 66,443,350 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef761,856,837 - 62,012,019 (+)NCBIHuRef
CHM1_1765,765,874 - 65,920,745 (+)NCBICHM1_1
T2T-CHM13v2.0767,420,877 - 67,582,531 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,007,777 - 65,162,926 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,IEA)
Golgi membrane  (IDA,IEA,TAS)
membrane  (IEA,TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer. Kang BW, etal., Anticancer Res. 2016 Jul;36(7):3353-61.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:7721887   PMID:9501187   PMID:9733778   PMID:10089882   PMID:10497246   PMID:12032733   PMID:12056800   PMID:12169668   PMID:12477932   PMID:12690205   PMID:12853948   PMID:14702039  
PMID:15060624   PMID:15489334   PMID:16244708   PMID:16344560   PMID:16859706   PMID:17558413   PMID:18672380   PMID:19343046   PMID:20379614   PMID:21873635   PMID:23472069   PMID:25079514  
PMID:26186194   PMID:26238632   PMID:28514442   PMID:28821720   PMID:29507755   PMID:33961781   PMID:34473204   PMID:35420441   PMID:35696571  


Genomics

Comparative Map Data
TPST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,198,790 - 66,360,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,205,317 - 66,420,543 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,670,321 - 65,825,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,307,750 - 65,462,865 (+)NCBINCBI36Build 36hg18NCBI36
Build 34765,114,463 - 65,269,579NCBI
Celera766,288,228 - 66,443,350 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef761,856,837 - 62,012,019 (+)NCBIHuRef
CHM1_1765,765,874 - 65,920,745 (+)NCBICHM1_1
T2T-CHM13v2.0767,420,877 - 67,582,531 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,007,777 - 65,162,926 (+)NCBI
Tpst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,102,167 - 130,164,575 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,102,167 - 130,164,570 (+)EnsemblGRCm39 Ensembl
GRCm385130,073,326 - 130,135,734 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,073,326 - 130,135,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,549,196 - 130,611,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,358,029 - 130,420,432 (+)NCBIMGSCv36mm8
Celera5127,079,934 - 127,142,580 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.53NCBI
Tpst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,180,688 - 32,247,478 (-)NCBIGRCr8
mRatBN7.21226,544,536 - 26,605,706 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,544,536 - 26,605,704 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,692,616 - 27,753,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,303,130 - 28,363,985 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,364,920 - 27,425,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,045,753 - 30,112,377 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,045,751 - 30,106,893 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,983,194 - 32,048,893 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,585,380 - 27,648,581 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,448,607 - 27,511,801 (-)NCBI
Celera1228,258,820 - 28,319,594 (-)NCBICelera
Cytogenetic Map12q12NCBI
Tpst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,520,906 - 8,618,107 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,523,362 - 8,616,891 (+)NCBIChiLan1.0ChiLan1.0
TPST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,520,599 - 81,670,282 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17129,847,958 - 129,997,430 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0759,707,582 - 59,856,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1773,271,704 - 73,419,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl773,271,704 - 73,419,642 (+)Ensemblpanpan1.1panPan2
TPST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16950,068 - 1,050,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6905,637 - 1,055,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,608,899 - 2,750,367 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06713,770 - 855,612 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6611,487 - 855,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16657,087 - 790,573 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06650,999 - 792,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06822,824 - 964,596 (+)NCBIUU_Cfam_GSD_1.0
Tpst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,443,739 - 126,539,126 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,497,424 - 7,565,483 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,497,431 - 7,592,790 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,407,609 - 16,585,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,407,607 - 16,525,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,660,057 - 16,771,040 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,925,002 - 2,065,405 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,925,056 - 2,065,632 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607014,573,481 - 14,714,049 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,503,484 - 8,588,004 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,479,113 - 8,587,942 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TPST1
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q11.21-11.22(chr7:62570287-67823956)x3 copy number gain See cases [RCV000050687] Chr7:62570287..67823956 [GRCh38]
Chr7:62030665..67288943 [GRCh37]
Chr7:61668100..66926378 [NCBI36]
Chr7:7q11.21-11.22		 pathogenic
GRCh38/hg38 7q11.21-11.22(chr7:64657050-72243063)x1 copy number loss See cases [RCV000050606] Chr7:64657050..72243063 [GRCh38]
Chr7:64117428..71708048 [GRCh37]
Chr7:63754863..71345984 [NCBI36]
Chr7:7q11.21-11.22		 pathogenic
GRCh38/hg38 7q11.21-21.11(chr7:64560824-79186156)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|See cases [RCV000052318] Chr7:64560824..79186156 [GRCh38]
Chr7:64021202..78815472 [GRCh37]
Chr7:63658637..78653408 [NCBI36]
Chr7:7q11.21-21.11		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q11.21(chr7:65906534-66769743)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053442]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053442]|See cases [RCV000053442] Chr7:65906534..66769743 [GRCh38]
Chr7:65371521..66234730 [GRCh37]
Chr7:65008956..65872165 [NCBI36]
Chr7:7q11.21		 uncertain significance
GRCh38/hg38 7p12.1-q11.22(chr7:53274059-68576213)x3 copy number gain See cases [RCV000053534] Chr7:53274059..68576213 [GRCh38]
Chr7:53341752..68041200 [GRCh37]
Chr7:53309246..67679136 [NCBI36]
Chr7:7p12.1-q11.22		 pathogenic
NM_003596.3(TPST1):c.-101-4211G>C single nucleotide variant Lung cancer [RCV000106248] Chr7:66236114 [GRCh38]
Chr7:65701101 [GRCh37]
Chr7:7q11.21		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q11.21(chr7:65835271-66837033)x3 copy number gain See cases [RCV000139628] Chr7:65835271..66837033 [GRCh38]
Chr7:65300258..66302020 [GRCh37]
Chr7:64937693..65939455 [NCBI36]
Chr7:7q11.21		 likely benign
GRCh38/hg38 7q11.21-11.23(chr7:62977085-75415352)x3 copy number gain See cases [RCV000142242] Chr7:62977085..75415352 [GRCh38]
Chr7:62437463..75044630 [GRCh37]
Chr7:62074898..74882566 [NCBI36]
Chr7:7q11.21-11.23		 pathogenic
GRCh38/hg38 7q11.21-11.23(chr7:62736364-75432710)x1 copy number loss See cases [RCV000142528] Chr7:62736364..75432710 [GRCh38]
Chr7:62196742..75061986 [GRCh37]
Chr7:61834177..74899922 [NCBI36]
Chr7:7q11.21-11.23		 pathogenic
GRCh38/hg38 7q11.21(chr7:62977012-66848675) copy number gain See cases [RCV000143449] Chr7:62977012..66848675 [GRCh38]
Chr7:62437390..66313662 [GRCh37]
Chr7:62074825..65951097 [NCBI36]
Chr7:7q11.21		 likely pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q11.21-11.22(chr7:63583563-71047246)x1 copy number loss See cases [RCV000511553] Chr7:63583563..71047246 [GRCh37]
Chr7:7q11.21-11.22		 pathogenic
GRCh37/hg19 7q11.21(chr7:65470729-66599216)x3 copy number gain See cases [RCV000511704] Chr7:65470729..66599216 [GRCh37]
Chr7:7q11.21		 uncertain significance
NC_000007.13:g.(20954043_21001537)_(114528369_114556605)inv inversion Childhood apraxia of speech [RCV000234948] Chr7:21001537..114528369 [GRCh37]
Chr7:7p15.3-q31.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q11.21(chr7:65515276-65709988)x3 copy number gain not provided [RCV000746757] Chr7:65515276..65709988 [GRCh37]
Chr7:7q11.21		 benign
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NM_003596.4(TPST1):c.112C>T (p.Arg38Cys) single nucleotide variant not specified [RCV004299850] Chr7:66240537 [GRCh38]
Chr7:65705524 [GRCh37]
Chr7:7q11.21		 uncertain significance
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NC_000007.13:g.(?_65556983)_(66460414_?)dup duplication Argininosuccinate lyase deficiency [RCV002009185] Chr7:65556983..66460414 [GRCh37]
Chr7:7q11.21		 likely pathogenic
GRCh37/hg19 7q11.21(chr7:65498293-65778546)x3 copy number gain not provided [RCV001834445] Chr7:65498293..65778546 [GRCh37]
Chr7:7q11.21		 likely benign
GRCh37/hg19 7q11.21(chr7:64651626-66010636)x1 copy number loss not provided [RCV001827870] Chr7:64651626..66010636 [GRCh37]
Chr7:7q11.21		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
NM_003596.4(TPST1):c.137G>A (p.Ser46Asn) single nucleotide variant not specified [RCV004208420] Chr7:66240562 [GRCh38]
Chr7:65705549 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.587G>A (p.Arg196Gln) single nucleotide variant not specified [RCV004229939] Chr7:66241012 [GRCh38]
Chr7:65705999 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.5T>C (p.Val2Ala) single nucleotide variant not specified [RCV004145538] Chr7:66240430 [GRCh38]
Chr7:65705417 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.125T>A (p.Val42Asp) single nucleotide variant not specified [RCV004113326] Chr7:66240550 [GRCh38]
Chr7:65705537 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.920C>T (p.Pro307Leu) single nucleotide variant not specified [RCV004236575] Chr7:66286585 [GRCh38]
Chr7:65751572 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.743G>A (p.Arg248Gln) single nucleotide variant not specified [RCV004201317] Chr7:66241168 [GRCh38]
Chr7:65706155 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.377A>T (p.Glu126Val) single nucleotide variant not specified [RCV004201142] Chr7:66240802 [GRCh38]
Chr7:65705789 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.113G>A (p.Arg38His) single nucleotide variant not specified [RCV004156559] Chr7:66240538 [GRCh38]
Chr7:65705525 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.560G>A (p.Arg187Gln) single nucleotide variant not specified [RCV004173409] Chr7:66240985 [GRCh38]
Chr7:65705972 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.649C>T (p.Arg217Cys) single nucleotide variant not specified [RCV004078387] Chr7:66241074 [GRCh38]
Chr7:65706061 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.544A>G (p.Met182Val) single nucleotide variant not specified [RCV004117017] Chr7:66240969 [GRCh38]
Chr7:65705956 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.202G>T (p.Asp68Tyr) single nucleotide variant not specified [RCV004078624] Chr7:66240627 [GRCh38]
Chr7:65705614 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.527A>G (p.Asn176Ser) single nucleotide variant not specified [RCV004337670] Chr7:66240952 [GRCh38]
Chr7:65705939 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.101G>A (p.Arg34Gln) single nucleotide variant not specified [RCV004358037] Chr7:66240526 [GRCh38]
Chr7:65705513 [GRCh37]
Chr7:7q11.21		 uncertain significance
GRCh37/hg19 7q11.21(chr7:65521172-65716867)x1 copy number loss not provided [RCV003482958] Chr7:65521172..65716867 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.368G>A (p.Arg123His) single nucleotide variant not specified [RCV004471033] Chr7:66240793 [GRCh38]
Chr7:65705780 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.901A>G (p.Lys301Glu) single nucleotide variant not specified [RCV004471035] Chr7:66286566 [GRCh38]
Chr7:65751553 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.854G>A (p.Arg285Lys) single nucleotide variant not specified [RCV004471034] Chr7:66286519 [GRCh38]
Chr7:65751506 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.1079T>C (p.Leu360Pro) single nucleotide variant not specified [RCV004471031] Chr7:66352539 [GRCh38]
Chr7:65817526 [GRCh37]
Chr7:7q11.21		 uncertain significance
NM_003596.4(TPST1):c.281A>G (p.Asp94Gly) single nucleotide variant not specified [RCV004471032] Chr7:66240706 [GRCh38]
Chr7:65705693 [GRCh37]
Chr7:7q11.21		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:803
Count of miRNA genes:565
Interacting mature miRNAs:610
Transcripts:ENST00000304842, ENST00000442120, ENST00000451388, ENST00000480281, ENST00000490159
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:3754955  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,735,764 - 65,735,896UniSTSGRCh37
Build 36765,373,199 - 65,373,331RGDNCBI36
Celera766,377,752 - 66,377,884RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,922,302 - 61,922,434UniSTS
CRA_TCAGchr7v2765,073,246 - 65,073,378UniSTS
RH80530  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,815,228 - 65,815,436UniSTSGRCh37
Build 36765,452,663 - 65,452,871RGDNCBI36
Celera766,298,228 - 66,298,436RGD
Cytogenetic Map7q11.21UniSTS
HuRef762,001,810 - 62,002,018UniSTS
CRA_TCAGchr7v2765,152,718 - 65,152,926UniSTS
GeneMap99-GB4 RH Map7377.07UniSTS
RH80949  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,825,163 - 65,825,370UniSTSGRCh37
Build 36765,462,598 - 65,462,805RGDNCBI36
Celera766,288,296 - 66,288,503RGD
Cytogenetic Map7q11.21UniSTS
HuRef762,011,744 - 62,011,951UniSTS
CRA_TCAGchr7v2765,162,651 - 65,162,858UniSTS
GeneMap99-GB4 RH Map7376.36UniSTS
SHGC-132858  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,777,642 - 65,777,950UniSTSGRCh37
Build 36765,415,077 - 65,415,385RGDNCBI36
Celera766,335,689 - 66,335,997RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,964,212 - 61,964,520UniSTS
CRA_TCAGchr7v2765,115,148 - 65,115,456UniSTS
TNG Radiation Hybrid Map729295.0UniSTS
SHGC-154849  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,798,288 - 65,798,635UniSTSGRCh37
Build 36765,435,723 - 65,436,070RGDNCBI36
Celera766,315,028 - 66,315,375RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,984,872 - 61,985,219UniSTS
CRA_TCAGchr7v2765,135,782 - 65,136,129UniSTS
TNG Radiation Hybrid Map1148660.0UniSTS
SHGC-36434  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,825,260 - 65,825,367UniSTSGRCh37
Build 36765,462,695 - 65,462,802RGDNCBI36
Celera766,288,299 - 66,288,406RGD
Cytogenetic Map7q11.21UniSTS
HuRef762,011,841 - 62,011,948UniSTS
CRA_TCAGchr7v2765,162,748 - 65,162,855UniSTS
TNG Radiation Hybrid Map729310.0UniSTS
GeneMap99-G3 RH Map72857.0UniSTS
SHGC-53551  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,777,752 - 65,777,935UniSTSGRCh37
Build 36765,415,187 - 65,415,370RGDNCBI36
Celera766,335,704 - 66,335,887RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,964,322 - 61,964,505UniSTS
CRA_TCAGchr7v2765,115,258 - 65,115,441UniSTS
TPST1_8810  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,824,911 - 65,825,465UniSTSGRCh37
Build 36765,462,346 - 65,462,900RGDNCBI36
Celera766,288,201 - 66,288,755RGD
HuRef762,011,492 - 62,012,046UniSTS
CRA_TCAGchr7v2765,162,399 - 65,162,953UniSTS
RH68719  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,771,318 - 65,771,529UniSTSGRCh37
Build 36765,408,753 - 65,408,964RGDNCBI36
Celera766,342,118 - 66,342,329RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,957,880 - 61,958,091UniSTS
CRA_TCAGchr7v2765,108,816 - 65,109,027UniSTS
GeneMap99-GB4 RH Map7378.43UniSTS
GDB:1317494  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,702,999 - 65,703,135UniSTSGRCh37
Build 36765,340,434 - 65,340,570RGDNCBI36
Celera766,410,513 - 66,410,649RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,889,567 - 61,889,703UniSTS
CRA_TCAGchr7v2765,040,482 - 65,040,618UniSTS
STS-AA034515  
Human AssemblyChrPosition (strand)SourceJBrowse
Celera766,288,448 - 66,288,662RGD
Cytogenetic Map7q11.21UniSTS
HuRef762,011,585 - 62,011,799UniSTS
GeneMap99-GB4 RH Map7383.65UniSTS
RH45913  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37765,777,753 - 65,777,903UniSTSGRCh37
Build 36765,415,188 - 65,415,338RGDNCBI36
Celera766,335,736 - 66,335,886RGD
Cytogenetic Map7q11.21UniSTS
HuRef761,964,323 - 61,964,473UniSTS
CRA_TCAGchr7v2765,115,259 - 65,115,409UniSTS
GeneMap99-GB4 RH Map7380.69UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1314 1573 1556 405 915 372 2634 626 2647 305 1379 1513 48 1 1114 1437 3
Low 1096 1405 170 219 1001 93 1720 1567 1087 114 81 100 127 90 1348 3 2
Below cutoff 22 13 32 3 4 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_003596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005250642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011516634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011516635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF038009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI221558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR542060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR542080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB212291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000304842   ⟹   ENSP00000302413
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,205,334 - 66,360,443 (+)Ensembl
RefSeq Acc Id: ENST00000442120   ⟹   ENSP00000399642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,205,317 - 66,240,550 (+)Ensembl
RefSeq Acc Id: ENST00000451388   ⟹   ENSP00000391338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,221,604 - 66,240,847 (+)Ensembl
RefSeq Acc Id: ENST00000480281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,205,334 - 66,359,473 (+)Ensembl
RefSeq Acc Id: ENST00000490159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,352,504 - 66,420,543 (+)Ensembl
RefSeq Acc Id: ENST00000649664   ⟹   ENSP00000497281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,205,385 - 66,360,426 (+)Ensembl
RefSeq Acc Id: NM_003596   ⟹   NP_003587
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
GRCh37765,670,259 - 65,825,438 (+)ENTREZGENE
Build 36765,307,750 - 65,462,865 (+)NCBI Archive
HuRef761,856,837 - 62,012,019 (+)ENTREZGENE
CHM1_1765,765,874 - 65,920,745 (+)NCBI
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
CRA_TCAGchr7v2765,007,777 - 65,162,926 (+)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_005250642   ⟹   XP_005250699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,352,918 (+)NCBI
GRCh37765,670,259 - 65,825,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011516634   ⟹   XP_011514936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011516635   ⟹   XP_011514937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017012726   ⟹   XP_016868215
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017012727   ⟹   XP_016868216
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047420956   ⟹   XP_047276912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,461 - 66,352,918 (+)NCBI
RefSeq Acc Id: XM_047420957   ⟹   XP_047276913
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,198,790 - 66,352,918 (+)NCBI
RefSeq Acc Id: XM_047420958   ⟹   XP_047276914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
RefSeq Acc Id: XM_047420959   ⟹   XP_047276915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,198,790 - 66,360,443 (+)NCBI
RefSeq Acc Id: XM_047420960   ⟹   XP_047276916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
RefSeq Acc Id: XM_047420962   ⟹   XP_047276918
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
RefSeq Acc Id: XM_047420963   ⟹   XP_047276919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,360,443 (+)NCBI
RefSeq Acc Id: XM_054359224   ⟹   XP_054215199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,575,010 (+)NCBI
RefSeq Acc Id: XM_054359225   ⟹   XP_054215200
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,889 - 67,575,010 (+)NCBI
RefSeq Acc Id: XM_054359226   ⟹   XP_054215201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,420,877 - 67,575,010 (+)NCBI
RefSeq Acc Id: XM_054359227   ⟹   XP_054215202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,217 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359228   ⟹   XP_054215203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359229   ⟹   XP_054215204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359230   ⟹   XP_054215205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,420,877 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359231   ⟹   XP_054215206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,217 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359232   ⟹   XP_054215207
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,217 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359233   ⟹   XP_054215208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359234   ⟹   XP_054215209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
RefSeq Acc Id: XM_054359235   ⟹   XP_054215210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0767,427,424 - 67,582,531 (+)NCBI
Protein Sequences
Protein RefSeqs NP_003587 (Get FASTA)   NCBI Sequence Viewer  
  XP_005250699 (Get FASTA)   NCBI Sequence Viewer  
  XP_011514936 (Get FASTA)   NCBI Sequence Viewer  
  XP_011514937 (Get FASTA)   NCBI Sequence Viewer  
  XP_016868215 (Get FASTA)   NCBI Sequence Viewer  
  XP_016868216 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276912 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276913 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276914 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276915 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276916 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276918 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276919 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215199 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215200 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215201 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215202 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215203 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215204 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215205 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215206 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215207 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215208 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215209 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215210 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC13552 (Get FASTA)   NCBI Sequence Viewer  
  AAH13188 (Get FASTA)   NCBI Sequence Viewer  
  AAS02012 (Get FASTA)   NCBI Sequence Viewer  
  AAS07522 (Get FASTA)   NCBI Sequence Viewer  
  BAG35922 (Get FASTA)   NCBI Sequence Viewer  
  CAG46857 (Get FASTA)   NCBI Sequence Viewer  
  CAG46877 (Get FASTA)   NCBI Sequence Viewer  
  EAL23739 (Get FASTA)   NCBI Sequence Viewer  
  EAX07937 (Get FASTA)   NCBI Sequence Viewer  
  EAX07938 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000302413
  ENSP00000302413.5
  ENSP00000391338.1
  ENSP00000399642.1
  ENSP00000497281.1
GenBank Protein O60507 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_003587   ⟸   NM_003596
- UniProtKB: A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot),   O60507 (UniProtKB/Swiss-Prot),   Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005250699   ⟸   XM_005250642
- Peptide Label: isoform X1
- UniProtKB: Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011514936   ⟸   XM_011516634
- Peptide Label: isoform X3
- UniProtKB: Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011514937   ⟸   XM_011516635
- Peptide Label: isoform X3
- UniProtKB: Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016868215   ⟸   XM_017012726
- Peptide Label: isoform X2
- UniProtKB: A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot),   O60507 (UniProtKB/Swiss-Prot),   Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016868216   ⟸   XM_017012727
- Peptide Label: isoform X2
- UniProtKB: A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot),   O60507 (UniProtKB/Swiss-Prot),   Q75M96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000497281   ⟸   ENST00000649664
RefSeq Acc Id: ENSP00000391338   ⟸   ENST00000451388
RefSeq Acc Id: ENSP00000399642   ⟸   ENST00000442120
RefSeq Acc Id: ENSP00000302413   ⟸   ENST00000304842
RefSeq Acc Id: XP_047276915   ⟸   XM_047420959
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047276913   ⟸   XM_047420957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047276916   ⟸   XM_047420960
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047276918   ⟸   XM_047420962
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047276914   ⟸   XM_047420958
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047276919   ⟸   XM_047420963
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047276912   ⟸   XM_047420956
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215205   ⟸   XM_054359230
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215201   ⟸   XM_054359226
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215206   ⟸   XM_054359231
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215207   ⟸   XM_054359232
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215202   ⟸   XM_054359227
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215203   ⟸   XM_054359228
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215204   ⟸   XM_054359229
- Peptide Label: isoform X2
- UniProtKB: O60507 (UniProtKB/Swiss-Prot),   A4D2M0 (UniProtKB/Swiss-Prot),   Q6FGM7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054215209   ⟸   XM_054359234
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054215210   ⟸   XM_054359235
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054215208   ⟸   XM_054359233
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054215199   ⟸   XM_054359224
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215200   ⟸   XM_054359225
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O60507-F1-model_v2 AlphaFold O60507 1-370 view protein structure

Promoters
RGD ID:6806300
Promoter ID:HG_KWN:57791
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000251705,   OTTHUMT00000345608,   UC010KZY.1,   UC010KZZ.1,   UC010LAA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36765,307,504 - 65,308,004 (+)MPROMDB
RGD ID:7210707
Promoter ID:EPDNEW_H11097
Type:initiation region
Name:TPST1_1
Description:tyrosylprotein sulfotransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,205,334 - 66,205,394EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12020 AgrOrtholog
COSMIC TPST1 COSMIC
Ensembl Genes ENSG00000169902 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000304842 ENTREZGENE
  ENST00000304842.6 UniProtKB/Swiss-Prot
  ENST00000442120.1 UniProtKB/TrEMBL
  ENST00000451388.1 UniProtKB/TrEMBL
  ENST00000649664.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000169902 GTEx
HGNC ID HGNC:12020 ENTREZGENE
Human Proteome Map TPST1 Human Proteome Map
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8460 UniProtKB/Swiss-Prot
NCBI Gene 8460 ENTREZGENE
OMIM 603125 OMIM
PANTHER PROTEIN-TYROSINE SULFOTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36699 PharmGKB
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4D2M0 ENTREZGENE
  C9J3I4_HUMAN UniProtKB/TrEMBL
  C9K0F3_HUMAN UniProtKB/TrEMBL
  O60507 ENTREZGENE
  Q6FGM7 ENTREZGENE
  Q75M96 ENTREZGENE, UniProtKB/TrEMBL
  Q75ML6_HUMAN UniProtKB/TrEMBL
  TPST1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A4D2M0 UniProtKB/Swiss-Prot
  Q6FGM7 UniProtKB/Swiss-Prot