IVNS1ABP (influenza virus NS1A binding protein) - Rat Genome Database

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Gene: IVNS1ABP (influenza virus NS1A binding protein) Homo sapiens
Analyze
Symbol: IVNS1ABP
Name: influenza virus NS1A binding protein
RGD ID: 1314824
HGNC Page HGNC:16951
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in RNA splicing; negative regulation of protein ubiquitination; and response to virus. Located in cytosol. Implicated in immunodeficiency 70.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ARA3; aryl hydrocarbon receptor-associated 3; aryl hydrocarbon receptor-associated protein 3; DKFZp686K06216; FLARA3; FLJ10069; FLJ10411; FLJ10962; FLJ35593; FLJ36593; HSPC068; IMD70; influenza virus NS1A-binding protein; kelch-like family member 39; kelch-like protein 39; KIAA0850; KLHL39; NCX downstream gene 1; ND1; NS-1; NS1-binding protein; NS1-BP; NS1BP
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,296,388 - 185,317,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,296,388 - 185,317,273 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,265,520 - 185,286,375 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,532,143 - 183,553,084 (-)NCBINCBI36Build 36hg18NCBI36
Celera1158,376,215 - 158,397,156 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1156,500,884 - 156,521,692 (-)NCBIHuRef
CHM1_11186,687,273 - 186,708,214 (-)NCBICHM1_1
T2T-CHM13v2.01184,653,292 - 184,680,201 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
aldrin  (ISO)
all-trans-retinoic acid  (EXP)
amiodarone  (ISO)
amphetamine  (ISO)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
caffeine  (EXP)
carbamazepine  (EXP)
carbon nanotube  (ISO)
CGP 52608  (EXP)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
coumestrol  (EXP)
crocidolite asbestos  (ISO)
cycloheximide  (ISO)
cyclosporin A  (EXP)
cytochalasin D  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
epoxiconazole  (ISO)
flutamide  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
fulvestrant  (EXP)
furan  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (EXP)
ketamine  (ISO)
L-methionine  (ISO)
levofloxacin  (ISO)
maneb  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methamphetamine  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel sulfate  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentanal  (EXP)
pirinixic acid  (ISO)
progesterone  (EXP)
quercetin  (EXP)
rac-lactic acid  (EXP)
resveratrol  (EXP,ISO)
rimonabant  (ISO)
rotenone  (ISO)
SB 431542  (EXP)
silicon dioxide  (ISO)
sunitinib  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
trichostatin A  (EXP)
trovafloxacin  (ISO)
urethane  (EXP)
valproic acid  (EXP)
vincristine  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9696811   PMID:9847309   PMID:10048485   PMID:11042152   PMID:12477932   PMID:14702039   PMID:16169070   PMID:16582008   PMID:17996313   PMID:19615732   PMID:20379614   PMID:20532202  
PMID:21942715   PMID:21988832   PMID:22190034   PMID:22268729   PMID:22863883   PMID:23184937   PMID:23398456   PMID:23414517   PMID:23472066   PMID:23825951   PMID:24210102   PMID:25619834  
PMID:26186194   PMID:26496610   PMID:26990986   PMID:27173435   PMID:27342126   PMID:27545878   PMID:27591049   PMID:28514442   PMID:28581483   PMID:29053956   PMID:29331416   PMID:29449217  
PMID:29497022   PMID:29507755   PMID:29540532   PMID:29676528   PMID:29844126   PMID:29871674   PMID:29921878   PMID:29987050   PMID:30021884   PMID:30209976   PMID:30538201   PMID:30948266  
PMID:31059266   PMID:31665637   PMID:31980649   PMID:32552912   PMID:32572027   PMID:32698014   PMID:32807901   PMID:33545068   PMID:33766124   PMID:33961781   PMID:34186245   PMID:34315543  
PMID:34349018   PMID:34728620   PMID:35271311   PMID:35367823   PMID:35446349   PMID:35652658   PMID:35776542   PMID:35831314   PMID:35896951   PMID:35906200   PMID:35944360   PMID:36042349  
PMID:36180527   PMID:36215168   PMID:36273042   PMID:36841324   PMID:36931259   PMID:37103221   PMID:38113892  


Genomics

Comparative Map Data
IVNS1ABP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,296,388 - 185,317,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,296,388 - 185,317,273 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,265,520 - 185,286,375 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,532,143 - 183,553,084 (-)NCBINCBI36Build 36hg18NCBI36
Celera1158,376,215 - 158,397,156 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1156,500,884 - 156,521,692 (-)NCBIHuRef
CHM1_11186,687,273 - 186,708,214 (-)NCBICHM1_1
T2T-CHM13v2.01184,653,292 - 184,680,201 (-)NCBIT2T-CHM13v2.0
Ivns1abp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,220,237 - 151,240,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,220,228 - 151,240,173 (+)EnsemblGRCm39 Ensembl
GRCm381151,344,486 - 151,364,445 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,344,477 - 151,364,422 (+)EnsemblGRCm38mm10GRCm38
MGSCv371153,191,628 - 153,211,575 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,106,716 - 153,126,663 (+)NCBIMGSCv36mm8
Celera1153,774,124 - 153,794,094 (+)NCBICelera
Cytogenetic Map1G1NCBI
cM Map164.06NCBI
Ivns1abp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81365,977,069 - 65,996,685 (+)NCBIGRCr8
mRatBN7.21363,427,040 - 63,446,701 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,427,041 - 63,446,701 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1366,046,767 - 66,066,387 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,311,389 - 67,331,009 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,574,305 - 64,593,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01368,702,970 - 68,722,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,702,820 - 68,722,472 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01373,670,179 - 73,684,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41366,228,241 - 66,235,533 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11366,231,168 - 66,250,662 (+)NCBI
Celera1363,369,286 - 63,376,578 (+)NCBICelera
Cytogenetic Map13q21NCBI
Ivns1abp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540623,866,705 - 23,881,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540623,866,705 - 23,881,184 (-)NCBIChiLan1.0ChiLan1.0
IVNS1ABP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2164,403,270 - 64,425,137 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,088,435 - 64,107,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,822,327 - 160,843,022 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,974,734 - 164,995,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,974,734 - 164,995,608 (-)Ensemblpanpan1.1panPan2
IVNS1ABP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1718,430,970 - 18,444,573 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl718,431,553 - 18,444,573 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha718,015,226 - 18,036,593 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0718,163,391 - 18,184,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl718,149,299 - 18,184,203 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1718,073,072 - 18,094,438 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0718,180,728 - 18,202,078 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0718,311,980 - 18,333,334 (-)NCBIUU_Cfam_GSD_1.0
Ivns1abp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934487,068,767 - 87,088,386 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364814,915,516 - 4,935,403 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364814,915,516 - 4,935,130 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IVNS1ABP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9126,453,155 - 126,479,587 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19126,459,542 - 126,480,126 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29138,907,583 - 138,917,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IVNS1ABP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12544,083,696 - 44,104,760 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2544,083,762 - 44,104,947 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605545,289,143 - 45,310,235 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ivns1abp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248148,270,489 - 8,290,553 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248148,270,510 - 8,291,971 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IVNS1ABP
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q25.1-31.1(chr1:175035040-186042595)x1 copy number loss See cases [RCV000051221] Chr1:175035040..186042595 [GRCh38]
Chr1:175004176..186011727 [GRCh37]
Chr1:173270799..184278350 [NCBI36]
Chr1:1q25.1-31.1		 pathogenic
GRCh38/hg38 1q25.2-32.1(chr1:179032905-199724897)x1 copy number loss See cases [RCV000053948] Chr1:179032905..199724897 [GRCh38]
Chr1:179002040..199694025 [GRCh37]
Chr1:177268663..197960648 [NCBI36]
Chr1:1q25.2-32.1		 pathogenic
GRCh38/hg38 1q25.3-31.1(chr1:182137726-186931125)x1 copy number loss See cases [RCV000053949] Chr1:182137726..186931125 [GRCh38]
Chr1:182106861..186900257 [GRCh37]
Chr1:180373484..185166880 [NCBI36]
Chr1:1q25.3-31.1		 pathogenic
NM_006469.4(IVNS1ABP):c.1333C>T (p.Pro445Ser) single nucleotide variant Malignant melanoma [RCV000064381] Chr1:185300253 [GRCh38]
Chr1:185269385 [GRCh37]
Chr1:183536008 [NCBI36]
Chr1:1q25.3		 not provided
GRCh38/hg38 1q25.2-31.3(chr1:176595962-196301688)x1 copy number loss See cases [RCV000134144] Chr1:176595962..196301688 [GRCh38]
Chr1:176565098..196270818 [GRCh37]
Chr1:174831721..194537441 [NCBI36]
Chr1:1q25.2-31.3		 pathogenic
GRCh38/hg38 1q25.3(chr1:184102589-185593977)x1 copy number loss See cases [RCV000134192] Chr1:184102589..185593977 [GRCh38]
Chr1:184071723..185563109 [GRCh37]
Chr1:182338346..183829732 [NCBI36]
Chr1:1q25.3		 uncertain significance
GRCh38/hg38 1q25.3-31.1(chr1:184888428-186622330)x1 copy number loss See cases [RCV000133938] Chr1:184888428..186622330 [GRCh38]
Chr1:184857562..186591462 [GRCh37]
Chr1:183124185..184858085 [NCBI36]
Chr1:1q25.3-31.1		 pathogenic
GRCh38/hg38 1q24.3-31.1(chr1:171039975-186875957)x3 copy number gain See cases [RCV000134876] Chr1:171039975..186875957 [GRCh38]
Chr1:171009116..186845089 [GRCh37]
Chr1:169275740..185111712 [NCBI36]
Chr1:1q24.3-31.1		 pathogenic
GRCh38/hg38 1q25.3-31.1(chr1:184271950-186238594)x1 copy number loss See cases [RCV000137474] Chr1:184271950..186238594 [GRCh38]
Chr1:184241084..186207726 [GRCh37]
Chr1:182507707..184474349 [NCBI36]
Chr1:1q25.3-31.1		 uncertain significance
GRCh38/hg38 1q24.3-31.2(chr1:170929720-191065409)x1 copy number loss See cases [RCV000142369] Chr1:170929720..191065409 [GRCh38]
Chr1:170898861..191034539 [GRCh37]
Chr1:169165485..189301162 [NCBI36]
Chr1:1q24.3-31.2		 pathogenic
GRCh38/hg38 1q24.2-31.1(chr1:170036068-187555148)x1 copy number loss See cases [RCV000143688] Chr1:170036068..187555148 [GRCh38]
Chr1:170005209..187524280 [GRCh37]
Chr1:168271833..185790903 [NCBI36]
Chr1:1q24.2-31.1		 pathogenic
GRCh37/hg19 1q25.3-31.2(chr1:181572003-191524283)x1 copy number loss See cases [RCV000240242] Chr1:181572003..191524283 [GRCh37]
Chr1:1q25.3-31.2		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737)x1 copy number loss See cases [RCV000445748] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265)x1 copy number loss See cases [RCV000448809] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758)x1 copy number loss See cases [RCV000448686] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179011314-199022759)x1 copy number loss See cases [RCV000512128] Chr1:179011314..199022759 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q25.1-31.1(chr1:173131908-187406532)x1 copy number loss not provided [RCV000736735] Chr1:173131908..187406532 [GRCh37]
Chr1:1q25.1-31.1		 pathogenic
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44		 pathogenic
NM_006469.5(IVNS1ABP):c.896-7C>T single nucleotide variant not provided [RCV000964489] Chr1:185301203 [GRCh38]
Chr1:185270335 [GRCh37]
Chr1:1q25.3		 benign
NM_006469.5(IVNS1ABP):c.1072C>T (p.Arg358Ter) single nucleotide variant Immunodeficiency 70 [RCV001250914] Chr1:185301020 [GRCh38]
Chr1:185270152 [GRCh37]
Chr1:1q25.3		 pathogenic
NC_000001.10:g.185276239_185287961del deletion Immunodeficiency 70 [RCV001250913] Chr1:185276239..185287961 [GRCh37]
Chr1:1q25.3		 pathogenic
NM_006469.5(IVNS1ABP):c.1899G>A (p.Trp633Ter) single nucleotide variant Immunodeficiency 70 [RCV001250915] Chr1:185298065 [GRCh38]
Chr1:185267197 [GRCh37]
Chr1:1q25.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:177551193-199599056)x1 copy number loss not provided [RCV001005157] Chr1:177551193..199599056 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
NM_006469.5(IVNS1ABP):c.1357C>T (p.Arg453Cys) single nucleotide variant not provided [RCV001726773] Chr1:185300229 [GRCh38]
Chr1:185269361 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737) copy number loss not specified [RCV002053780] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265) copy number loss not specified [RCV002053769] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-31.1(chr1:178522021-190322133)x1 copy number loss not provided [RCV001836604] Chr1:178522021..190322133 [GRCh37]
Chr1:1q25.2-31.1		 pathogenic
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758) copy number loss not specified [RCV002053736] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-31.2(chr1:179727182-192260142)x1 copy number loss not provided [RCV002473949] Chr1:179727182..192260142 [GRCh37]
Chr1:1q25.2-31.2		 pathogenic
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3		 pathogenic
NM_006469.5(IVNS1ABP):c.1910C>T (p.Thr637Ile) single nucleotide variant not specified [RCV004118714] Chr1:185298054 [GRCh38]
Chr1:185267186 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.605T>G (p.Val202Gly) single nucleotide variant not specified [RCV004163132] Chr1:185307066 [GRCh38]
Chr1:185276198 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1278C>G (p.His426Gln) single nucleotide variant not specified [RCV004198988] Chr1:185300308 [GRCh38]
Chr1:185269440 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1324G>T (p.Asp442Tyr) single nucleotide variant not specified [RCV004144201] Chr1:185300262 [GRCh38]
Chr1:185269394 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.199C>A (p.Pro67Thr) single nucleotide variant not specified [RCV004253975] Chr1:185309085 [GRCh38]
Chr1:185278217 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1293T>C (p.Ser431=) single nucleotide variant not provided [RCV003421284] Chr1:185300293 [GRCh38]
Chr1:185269425 [GRCh37]
Chr1:1q25.3		 likely benign
NM_006469.5(IVNS1ABP):c.553A>C (p.Asn185His) single nucleotide variant not specified [RCV004355975] Chr1:185307118 [GRCh38]
Chr1:185276250 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1910del (p.Thr637fs) deletion Immunodeficiency 70 [RCV003448615] Chr1:185298054 [GRCh38]
Chr1:185267186 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1399A>G (p.Ile467Val) single nucleotide variant IVNS1ABP-related condition [RCV003399834] Chr1:185300101 [GRCh38]
Chr1:185269233 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.874G>A (p.Val292Ile) single nucleotide variant not provided [RCV003421285] Chr1:185301455 [GRCh38]
Chr1:185270587 [GRCh37]
Chr1:1q25.3		 likely benign
NM_006469.5(IVNS1ABP):c.216C>T (p.His72=) single nucleotide variant not provided [RCV003421286] Chr1:185309068 [GRCh38]
Chr1:185278200 [GRCh37]
Chr1:1q25.3		 likely benign
NM_006469.5(IVNS1ABP):c.1675G>C (p.Gly559Arg) single nucleotide variant IVNS1ABP-related condition [RCV003410659] Chr1:185299710 [GRCh38]
Chr1:185268842 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.379T>C (p.Ser127Pro) single nucleotide variant IVNS1ABP-related condition [RCV003402083] Chr1:185307641 [GRCh38]
Chr1:185276773 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.240A>G (p.Pro80=) single nucleotide variant IVNS1ABP-related condition [RCV003939683] Chr1:185309044 [GRCh38]
Chr1:185278176 [GRCh37]
Chr1:1q25.3		 likely benign
GRCh37/hg19 1q24.2-31.1(chr1:167994071-187711459)x1 copy number loss not specified [RCV003987250] Chr1:167994071..187711459 [GRCh37]
Chr1:1q24.2-31.1		 pathogenic
NM_006469.5(IVNS1ABP):c.610C>T (p.Arg204Cys) single nucleotide variant Immunodeficiency 70 [RCV003989978] Chr1:185307061 [GRCh38]
Chr1:185276193 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.934T>C (p.Phe312Leu) single nucleotide variant IVNS1ABP-related condition [RCV003911694] Chr1:185301158 [GRCh38]
Chr1:185270290 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.282-7dup duplication IVNS1ABP-related condition [RCV003949786] Chr1:185308881..185308882 [GRCh38]
Chr1:185278013..185278014 [GRCh37]
Chr1:1q25.3		 likely benign
NM_006469.5(IVNS1ABP):c.282-7T>A single nucleotide variant IVNS1ABP-related condition [RCV003896467] Chr1:185308882 [GRCh38]
Chr1:185278014 [GRCh37]
Chr1:1q25.3		 likely benign
NM_006469.5(IVNS1ABP):c.1490C>T (p.Pro497Leu) single nucleotide variant not specified [RCV004400965] Chr1:185300010 [GRCh38]
Chr1:185269142 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.1423G>A (p.Gly475Ser) single nucleotide variant not specified [RCV004400964] Chr1:185300077 [GRCh38]
Chr1:185269209 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.654A>T (p.Glu218Asp) single nucleotide variant not specified [RCV004400968] Chr1:185307017 [GRCh38]
Chr1:185276149 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.236A>G (p.Asn79Ser) single nucleotide variant not specified [RCV004400967] Chr1:185309048 [GRCh38]
Chr1:185278180 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_006469.5(IVNS1ABP):c.217G>A (p.Val73Ile) single nucleotide variant not specified [RCV004400966] Chr1:185309067 [GRCh38]
Chr1:185278199 [GRCh37]
Chr1:1q25.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1486
Count of miRNA genes:830
Interacting mature miRNAs:958
Transcripts:ENST00000367497, ENST00000367498, ENST00000392007, ENST00000422754, ENST00000459929, ENST00000468217, ENST00000475046, ENST00000480769, ENST00000491112, ENST00000494880
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-76046  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,265,617 - 185,265,736UniSTSGRCh37
Build 361183,532,240 - 183,532,359RGDNCBI36
Celera1158,376,312 - 158,376,431RGD
Cytogenetic Map1q25.1-q31.1UniSTS
TNG Radiation Hybrid Map188552.0UniSTS
GeneMap99-GB4 RH Map1639.92UniSTS
NCBI RH Map11573.4UniSTS
SHGC-37348  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,266,064 - 185,266,189UniSTSGRCh37
Build 361183,532,687 - 183,532,812RGDNCBI36
Celera1158,376,759 - 158,376,884RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,501,428 - 156,501,553UniSTS
TNG Radiation Hybrid Map188610.0UniSTS
GeneMap99-G3 RH Map17247.0UniSTS
RH103763  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,274,309 - 185,274,429UniSTSGRCh37
Build 361183,540,932 - 183,541,052RGDNCBI36
Celera1158,385,004 - 158,385,124RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,509,540 - 156,509,660UniSTS
GeneMap99-GB4 RH Map1638.83UniSTS
SHGC-76027  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,266,555 - 185,266,685UniSTSGRCh37
Build 361183,533,178 - 183,533,308RGDNCBI36
Celera1158,377,250 - 158,377,380RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,501,919 - 156,502,049UniSTS
TNG Radiation Hybrid Map188610.0UniSTS
GeneMap99-GB4 RH Map1639.12UniSTS
D1S1822E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,265,642 - 185,265,743UniSTSGRCh37
Build 361183,532,265 - 183,532,366RGDNCBI36
Celera1158,376,337 - 158,376,438RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,501,006 - 156,501,107UniSTS
TNG Radiation Hybrid Map188613.0UniSTS
GeneMap99-GB4 RH Map1639.22UniSTS
SHGC-76054  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,270,527 - 185,270,749UniSTSGRCh37
Build 361183,537,150 - 183,537,372RGDNCBI36
Celera1158,381,222 - 158,381,444RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,505,891 - 156,506,113UniSTS
TNG Radiation Hybrid Map188610.0UniSTS
GeneMap99-GB4 RH Map1640.63UniSTS
NCBI RH Map11573.0UniSTS
D1S2378  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,265,525 - 185,265,775UniSTSGRCh37
Build 361183,532,148 - 183,532,398RGDNCBI36
Celera1158,376,220 - 158,376,470RGD
Cytogenetic Map1q25.1-q31.1UniSTS
HuRef1156,500,889 - 156,501,139UniSTS
GeneMap99-GB4 RH Map1639.22UniSTS
Whitehead-RH Map1794.7UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11573.4UniSTS
IVNS1ABP  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,270,166 - 185,270,277UniSTSGRCh37
Celera1158,380,861 - 158,380,972UniSTS
HuRef1156,505,530 - 156,505,641UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1
Medium 2426 2842 1663 567 1935 408 4301 2036 3341 418 1447 1607 172 1 1203 2732 4 1
Low 13 149 63 57 16 57 56 161 393 1 12 6 3 1 56 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_006469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005244843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB020657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ012449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL078644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL356273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ443528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ443529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000367497   ⟹   ENSP00000356467
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,307,680 - 185,311,127 (-)Ensembl
RefSeq Acc Id: ENST00000367498   ⟹   ENSP00000356468
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,296,388 - 185,317,243 (-)Ensembl
RefSeq Acc Id: ENST00000422754   ⟹   ENSP00000401826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,306,750 - 185,307,662 (-)Ensembl
RefSeq Acc Id: ENST00000459929
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,297,015 - 185,317,273 (-)Ensembl
RefSeq Acc Id: ENST00000468217
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,300,097 - 185,300,918 (-)Ensembl
RefSeq Acc Id: ENST00000475046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,297,771 - 185,301,714 (-)Ensembl
RefSeq Acc Id: ENST00000480769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,296,388 - 185,306,500 (-)Ensembl
RefSeq Acc Id: ENST00000491112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,300,246 - 185,301,249 (-)Ensembl
RefSeq Acc Id: ENST00000494880
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,298,405 - 185,301,638 (-)Ensembl
RefSeq Acc Id: NM_006469   ⟹   NP_006460
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,296,388 - 185,317,243 (-)NCBI
GRCh371185,265,520 - 185,286,461 (-)RGD
Build 361183,532,143 - 183,553,084 (-)NCBI Archive
Celera1158,376,215 - 158,397,156 (-)RGD
HuRef1156,500,884 - 156,521,692 (-)ENTREZGENE
CHM1_11186,687,273 - 186,708,214 (-)NCBI
T2T-CHM13v2.01184,653,292 - 184,674,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047434070   ⟹   XP_047290026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,296,388 - 185,317,243 (-)NCBI
RefSeq Acc Id: XM_047434096   ⟹   XP_047290052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,296,388 - 185,317,243 (-)NCBI
RefSeq Acc Id: XM_047434109   ⟹   XP_047290065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,296,388 - 185,306,627 (-)NCBI
RefSeq Acc Id: XM_054333888   ⟹   XP_054189863
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01184,653,292 - 184,680,201 (-)NCBI
RefSeq Acc Id: XM_054333889   ⟹   XP_054189864
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01184,653,292 - 184,674,147 (-)NCBI
RefSeq Acc Id: XM_054333890   ⟹   XP_054189865
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01184,653,292 - 184,663,531 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_006460   ⟸   NM_006469
- UniProtKB: Q9NZX0 (UniProtKB/Swiss-Prot),   Q7LCG2 (UniProtKB/Swiss-Prot),   Q6NW38 (UniProtKB/Swiss-Prot),   Q5TF75 (UniProtKB/Swiss-Prot),   Q1G4T7 (UniProtKB/Swiss-Prot),   Q1G4T6 (UniProtKB/Swiss-Prot),   A8K8R6 (UniProtKB/Swiss-Prot),   Q9Y480 (UniProtKB/Swiss-Prot),   Q9Y6Y0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000356468   ⟸   ENST00000367498
RefSeq Acc Id: ENSP00000356467   ⟸   ENST00000367497
RefSeq Acc Id: ENSP00000401826   ⟸   ENST00000422754
RefSeq Acc Id: XP_047290052   ⟸   XM_047434096
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047290026   ⟸   XM_047434070
- Peptide Label: isoform X1
- UniProtKB: Q9Y6Y0 (UniProtKB/Swiss-Prot),   Q9NZX0 (UniProtKB/Swiss-Prot),   Q7LCG2 (UniProtKB/Swiss-Prot),   Q6NW38 (UniProtKB/Swiss-Prot),   Q5TF75 (UniProtKB/Swiss-Prot),   Q1G4T7 (UniProtKB/Swiss-Prot),   Q1G4T6 (UniProtKB/Swiss-Prot),   A8K8R6 (UniProtKB/Swiss-Prot),   Q9Y480 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047290065   ⟸   XM_047434109
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054189863   ⟸   XM_054333888
- Peptide Label: isoform X1
- UniProtKB: Q9Y6Y0 (UniProtKB/Swiss-Prot),   Q9NZX0 (UniProtKB/Swiss-Prot),   Q7LCG2 (UniProtKB/Swiss-Prot),   Q6NW38 (UniProtKB/Swiss-Prot),   Q5TF75 (UniProtKB/Swiss-Prot),   Q1G4T7 (UniProtKB/Swiss-Prot),   Q1G4T6 (UniProtKB/Swiss-Prot),   A8K8R6 (UniProtKB/Swiss-Prot),   Q9Y480 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054189864   ⟸   XM_054333889
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054189865   ⟸   XM_054333890
- Peptide Label: isoform X3
Protein Domains
BACK   BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6Y0-F1-model_v2 AlphaFold Q9Y6Y0 1-642 view protein structure

Promoters
RGD ID:6809582
Promoter ID:HG_ACW:5128
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:IVNS1ABP.OAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361183,528,536 - 183,529,036 (-)MPROMDB
RGD ID:6785811
Promoter ID:HG_KWN:6552
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000085781,   OTTHUMT00000085782,   UC001GRI.1,   UC001GRM.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361183,536,741 - 183,537,342 (-)MPROMDB
RGD ID:6785810
Promoter ID:HG_KWN:6553
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000085776
Position:
Human AssemblyChrPosition (strand)Source
Build 361183,541,126 - 183,541,626 (-)MPROMDB
RGD ID:6785826
Promoter ID:HG_KWN:6556
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000367496,   ENST00000392007,   OTTHUMT00000085774,   OTTHUMT00000085775,   UC009WYK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361183,552,901 - 183,553,752 (-)MPROMDB
RGD ID:6858394
Promoter ID:EPDNEW_H2362
Type:initiation region
Name:IVNS1ABP_1
Description:influenza virus NS1A binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,317,243 - 185,317,303EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16951 AgrOrtholog
COSMIC IVNS1ABP COSMIC
Ensembl Genes ENSG00000116679 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000367497.1 UniProtKB/TrEMBL
  ENST00000367498 ENTREZGENE
  ENST00000367498.8 UniProtKB/Swiss-Prot
  ENST00000422754.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/Swiss-Prot
GTEx ENSG00000116679 GTEx
HGNC ID HGNC:16951 ENTREZGENE
Human Proteome Map IVNS1ABP Human Proteome Map
InterPro BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB-kelch_protein UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/Swiss-Prot
  Kelch_1 UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10625 UniProtKB/Swiss-Prot
NCBI Gene 10625 ENTREZGENE
OMIM 609209 OMIM
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  AGAP004733-PA UniProtKB/TrEMBL
  INFLUENZA VIRUS NS1A-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KELCH PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_1 UniProtKB/Swiss-Prot
PharmGKB PA134875300 PharmGKB
PIRSF Kelch-like_protein_gigaxonin UniProtKB/Swiss-Prot
PRINTS KELCHREPEAT UniProtKB/Swiss-Prot
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch UniProtKB/Swiss-Prot
Superfamily-SCOP SSF117281 UniProtKB/Swiss-Prot
  SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K8R6 ENTREZGENE
  H0Y5Y2_HUMAN UniProtKB/TrEMBL
  NS1BP_HUMAN UniProtKB/Swiss-Prot
  Q1G4T6 ENTREZGENE
  Q1G4T7 ENTREZGENE
  Q5TF75 ENTREZGENE
  Q6NW38 ENTREZGENE
  Q7LCG2 ENTREZGENE
  Q9NZX0 ENTREZGENE
  Q9Y480 ENTREZGENE
  Q9Y6Y0 ENTREZGENE
  X6R674_HUMAN UniProtKB/TrEMBL
UniProt Secondary A8K8R6 UniProtKB/Swiss-Prot
  Q1G4T6 UniProtKB/Swiss-Prot
  Q1G4T7 UniProtKB/Swiss-Prot
  Q5TF75 UniProtKB/Swiss-Prot
  Q6NW38 UniProtKB/Swiss-Prot
  Q7LCG2 UniProtKB/Swiss-Prot
  Q9NZX0 UniProtKB/Swiss-Prot
  Q9Y480 UniProtKB/Swiss-Prot