SLC39A1 (solute carrier family 39 member 1) - Rat Genome Database

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Gene: SLC39A1 (solute carrier family 39 member 1) Homo sapiens
Analyze
Symbol: SLC39A1
Name: solute carrier family 39 member 1
RGD ID: 1313154
HGNC Page HGNC:12876
Description: Enables zinc ion transmembrane transporter activity. Involved in zinc ion transmembrane transport. Located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: hZIP1; solute carrier family 39 (zinc transporter), member 1; solute carrier family 39 (zinc transporter), member 3; zinc transporter 1; zinc transporter ZIP1; zinc-iron regulated transporter-like; zinc-iron-regulated transporter-like; zinc/iron regulated transporter-like; ZIP-1; ZIP1; ZIRTL; zrt- and Irt-like protein 1; ZRT/IRT-like protein 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: SLC39A1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,959,110 - 153,968,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,959,099 - 153,968,184 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,931,586 - 153,940,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,198,212 - 152,206,812 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,744,661 - 150,753,261NCBI
Celera1127,003,339 - 127,011,938 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBIHuRef
CHM1_11155,327,888 - 155,336,973 (-)NCBICHM1_1
T2T-CHM13v2.01153,096,371 - 153,105,445 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10477520   PMID:10610721   PMID:10681536   PMID:10810093   PMID:11301334   PMID:11696349   PMID:12477932   PMID:12888280   PMID:14525987   PMID:14702039   PMID:15489334   PMID:16153295  
PMID:16169070   PMID:16203195   PMID:16303743   PMID:16344560   PMID:17635580   PMID:18279033   PMID:18765529   PMID:19026724   PMID:19644445   PMID:19802870   PMID:20471814   PMID:20705137  
PMID:21053094   PMID:21103883   PMID:21360563   PMID:21873635   PMID:21988832   PMID:22349685   PMID:22658674   PMID:22903471   PMID:23839533   PMID:23921484   PMID:24488210   PMID:24878177  
PMID:24922175   PMID:25356737   PMID:26081940   PMID:26186194   PMID:26760575   PMID:28298427   PMID:28514442   PMID:30581142   PMID:32296183   PMID:32513696   PMID:32814053   PMID:33144569  
PMID:33961781   PMID:34615436   PMID:35696571   PMID:36057605  


Genomics

Comparative Map Data
SLC39A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,959,110 - 153,968,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,959,099 - 153,968,184 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,931,586 - 153,940,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,198,212 - 152,206,812 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,744,661 - 150,753,261NCBI
Celera1127,003,339 - 127,011,938 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBIHuRef
CHM1_11155,327,888 - 155,336,973 (-)NCBICHM1_1
T2T-CHM13v2.01153,096,371 - 153,105,445 (-)NCBIT2T-CHM13v2.0
Slc39a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,155,512 - 90,160,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,155,479 - 90,160,919 (+)EnsemblGRCm39 Ensembl
GRCm38390,248,190 - 90,253,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,248,172 - 90,253,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,052,114 - 90,057,534 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,334,157 - 90,339,539 (+)NCBIMGSCv36mm8
MGSCv36391,093,484 - 91,099,116 (+)NCBIMGSCv36mm8
Celera390,285,048 - 90,290,812 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.21NCBI
Slc39a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,001,052 - 178,006,689 (+)NCBIGRCr8
mRatBN7.22175,703,413 - 175,709,063 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,703,441 - 175,709,058 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,843,537 - 182,849,109 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,865,926 - 180,871,499 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,466,212 - 175,471,775 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,609,766 - 189,615,367 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,609,800 - 189,615,366 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,042,625 - 209,048,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,490,501 - 182,496,068 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,440,596 - 182,445,640 (+)NCBI
Celera2169,638,848 - 169,644,414 (+)NCBICelera
Cytogenetic Map2q34NCBI
Slc39a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545554,947 - 560,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545556,210 - 559,732 (-)NCBIChiLan1.0ChiLan1.0
SLC39A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,864,490 - 95,884,853 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,599,943 - 95,620,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,304,237 - 129,315,484 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,932,926 - 132,943,891 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,944,346 - 132,952,951 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1132,932,926 - 132,943,891 (-)Ensemblpanpan1.1panPan2
SLC39A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,171,219 - 43,174,876 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,171,287 - 43,174,036 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,661,635 - 42,665,278 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,041,658 - 43,045,302 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,041,740 - 43,045,301 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,820,327 - 42,823,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,873,597 - 42,877,237 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,157,835 - 43,161,479 (+)NCBIUU_Cfam_GSD_1.0
Slc39a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,674,699 - 24,678,289 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,704,723 - 3,708,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,704,738 - 3,708,671 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,729,347 - 95,733,819 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,729,480 - 95,733,824 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,630,406 - 104,635,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,847,928 - 9,852,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,847,968 - 9,853,413 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,218,019 - 9,223,131 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,260,681 - 3,264,959 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,260,673 - 3,264,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC39A1
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.3(chr1:153699434-153981614)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053212]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053212]|See cases [RCV000053212] Chr1:153699434..153981614 [GRCh38]
Chr1:153671910..153954090 [GRCh37]
Chr1:151938534..152220714 [NCBI36]
Chr1:1q21.3
uncertain significance
GRCh38/hg38 1q21.3(chr1:153759563-154219803)x1 copy number loss See cases [RCV000053883] Chr1:153759563..154219803 [GRCh38]
Chr1:153732039..154192279 [GRCh37]
Chr1:151998663..152458903 [NCBI36]
Chr1:1q21.3
pathogenic
GRCh38/hg38 1q21.3(chr1:153939571-153978276)x1 copy number loss See cases [RCV000053884] Chr1:153939571..153978276 [GRCh38]
Chr1:153912047..153950752 [GRCh37]
Chr1:152178671..152217376 [NCBI36]
Chr1:1q21.3
pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2
pathogenic
Single allele deletion Severe intellectual disability-poor language-strabismus-grimacing face-long fingers syndrome [RCV000677922] Chr1:153887335..154062496 [GRCh38]
Chr1:153859810..154034971 [GRCh37]
Chr1:1q21.3
likely pathogenic
GRCh37/hg19 1q21.3-23.1(chr1:153751465-156660462)x3 copy number gain not provided [RCV000585385] Chr1:153751465..156660462 [GRCh37]
Chr1:1q21.3-23.1
likely pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q21.3(chr1:150853044-154647786)x3 copy number gain not provided [RCV000684655] Chr1:150853044..154647786 [GRCh37]
Chr1:1q21.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q21.3(chr1:153701504-154218584) copy number loss Severe intellectual disability-poor language-strabismus-grimacing face-long fingers syndrome [RCV000767778] Chr1:153701504..154218584 [GRCh37]
Chr1:1q21.3
pathogenic
GRCh37/hg19 1q21.3(chr1:153659094-154307972)x3 copy number gain not provided [RCV001005142] Chr1:153659094..154307972 [GRCh37]
Chr1:1q21.3
uncertain significance
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
GRCh37/hg19 1q21.3(chr1:153866956-154000766)x1 copy number loss not provided [RCV001258472] Chr1:153866956..154000766 [GRCh37]
Chr1:1q21.3
uncertain significance
NC_000001.10:g.(?_149895434)_(156851434_?)dup duplication Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency [RCV001958273]|Congenital neutropenia-myelofibrosis-nephromegaly syndrome [RCV001958271]|Kostmann syndrome [RCV003120769]|MHC class II deficiency [RCV001992607] Chr1:149895434..156851434 [GRCh37]
Chr1:1q21.2-23.1
uncertain significance
NC_000001.10:g.(?_153782653)_(153964569_?)del deletion not provided [RCV003109731] Chr1:153782653..153964569 [GRCh37]
Chr1:1q21.3
pathogenic
NM_001271958.2(SLC39A1):c.541T>C (p.Cys181Arg) single nucleotide variant not specified [RCV004164265] Chr1:153960532 [GRCh38]
Chr1:153933008 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.893G>C (p.Ser298Thr) single nucleotide variant not specified [RCV004105640] Chr1:153960180 [GRCh38]
Chr1:153932656 [GRCh37]
Chr1:1q21.3
likely benign
NM_001271958.2(SLC39A1):c.13G>A (p.Gly5Arg) single nucleotide variant not specified [RCV004104399] Chr1:153962703 [GRCh38]
Chr1:153935179 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.83A>G (p.Glu28Gly) single nucleotide variant not specified [RCV004124021] Chr1:153962633 [GRCh38]
Chr1:153935109 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.131G>A (p.Cys44Tyr) single nucleotide variant not specified [RCV004160763] Chr1:153962585 [GRCh38]
Chr1:153935061 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.715G>T (p.Val239Leu) single nucleotide variant not specified [RCV004123503] Chr1:153960358 [GRCh38]
Chr1:153932834 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.910C>T (p.Leu304Phe) single nucleotide variant not specified [RCV004137172] Chr1:153960163 [GRCh38]
Chr1:153932639 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.584G>A (p.Gly195Glu) single nucleotide variant not specified [RCV004249076] Chr1:153960489 [GRCh38]
Chr1:153932965 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.856A>C (p.Ile286Leu) single nucleotide variant not specified [RCV004308976] Chr1:153960217 [GRCh38]
Chr1:153932693 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.751C>T (p.Pro251Ser) single nucleotide variant not specified [RCV004271725] Chr1:153960322 [GRCh38]
Chr1:153932798 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.467C>T (p.Pro156Leu) single nucleotide variant not specified [RCV004256080] Chr1:153960606 [GRCh38]
Chr1:153933082 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.19C>T (p.Pro7Ser) single nucleotide variant not specified [RCV004276646] Chr1:153962697 [GRCh38]
Chr1:153935173 [GRCh37]
Chr1:1q21.3
uncertain significance
GRCh37/hg19 1q12-23.1(chr1:142535935-157648813)x3 copy number gain Chromosome 1q21.1 duplication syndrome [RCV003329522] Chr1:142535935..157648813 [GRCh37]
Chr1:1q12-23.1
pathogenic
NM_001271958.2(SLC39A1):c.616C>T (p.Arg206Trp) single nucleotide variant not specified [RCV004351048] Chr1:153960457 [GRCh38]
Chr1:153932933 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.175C>T (p.His59Tyr) single nucleotide variant not specified [RCV004357330] Chr1:153962541 [GRCh38]
Chr1:153935017 [GRCh37]
Chr1:1q21.3
uncertain significance
GRCh37/hg19 1q21.1-23.1(chr1:144368497-158992086)x3 copy number gain not specified [RCV003986717] Chr1:144368497..158992086 [GRCh37]
Chr1:1q21.1-23.1
pathogenic
GRCh37/hg19 1q21.1-23.1(chr1:146577511-157155587)x3 copy number gain not specified [RCV003987261] Chr1:146577511..157155587 [GRCh37]
Chr1:1q21.1-23.1
pathogenic
NM_001271958.2(SLC39A1):c.634C>A (p.Leu212Met) single nucleotide variant not specified [RCV004461494] Chr1:153960439 [GRCh38]
Chr1:153932915 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.170C>A (p.Ala57Asp) single nucleotide variant not specified [RCV004461492] Chr1:153962546 [GRCh38]
Chr1:153935022 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.793G>A (p.Gly265Arg) single nucleotide variant not specified [RCV004461495] Chr1:153960280 [GRCh38]
Chr1:153932756 [GRCh37]
Chr1:1q21.3
uncertain significance
NM_001271958.2(SLC39A1):c.532T>A (p.Leu178Met) single nucleotide variant not specified [RCV004461493] Chr1:153960541 [GRCh38]
Chr1:153933017 [GRCh37]
Chr1:1q21.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3596
Count of miRNA genes:851
Interacting mature miRNAs:1023
Transcripts:ENST00000310483, ENST00000356205, ENST00000368621, ENST00000368623, ENST00000413622, ENST00000417348, ENST00000429040, ENST00000461071, ENST00000537590
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH186  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,931,606 - 153,931,745UniSTSGRCh37
Build 361152,198,230 - 152,198,369RGDNCBI36
Celera1127,003,357 - 127,003,496RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,294,192 - 125,294,331UniSTS
GeneMap99-GB4 RH Map1557.59UniSTS
NCBI RH Map11225.7UniSTS
RH10553  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,931,642 - 153,931,834UniSTSGRCh37
Build 361152,198,266 - 152,198,458RGDNCBI36
Celera1127,003,393 - 127,003,585RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,294,228 - 125,294,420UniSTS
RH64708  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,932,566 - 153,932,651UniSTSGRCh37
Build 361152,199,190 - 152,199,275RGDNCBI36
Celera1127,004,317 - 127,004,402RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,295,152 - 125,295,237UniSTS
D1S2463  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,940,811 - 153,941,019UniSTSGRCh37
Build 361152,207,435 - 152,207,643RGDNCBI36
Celera1127,012,561 - 127,012,769RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,303,397 - 125,303,605UniSTS
Whitehead-RH Map1671.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11294.3UniSTS
PMC321570P9  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,932,574 - 153,933,152UniSTSGRCh37
Build 361152,199,198 - 152,199,776RGDNCBI36
Celera1127,004,325 - 127,004,903RGD
Cytogenetic Map1q21UniSTS
HuRef1125,295,160 - 125,295,738UniSTS
G19748  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,931,642 - 153,931,834UniSTSGRCh37
Build 361152,198,266 - 152,198,458RGDNCBI36
Celera1127,003,393 - 127,003,585RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,294,228 - 125,294,420UniSTS
RH16039  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,931,685 - 153,931,844UniSTSGRCh37
Build 361152,198,309 - 152,198,468RGDNCBI36
Celera1127,003,436 - 127,003,595RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,294,271 - 125,294,430UniSTS
GeneMap99-GB4 RH Map1557.59UniSTS
NCBI RH Map11222.2UniSTS
WI-22571  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,939,116 - 153,939,292UniSTSGRCh37
Build 361152,205,740 - 152,205,916RGDNCBI36
Celera1127,010,867 - 127,011,043RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,301,702 - 125,301,878UniSTS
GeneMap99-GB4 RH Map1541.31UniSTS
Whitehead-RH Map1673.1UniSTS
NCBI RH Map11114.2UniSTS
D1S1830E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,931,677 - 153,931,783UniSTSGRCh37
Build 361152,198,301 - 152,198,407RGDNCBI36
Celera1127,003,428 - 127,003,534RGD
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q21UniSTS
HuRef1125,294,263 - 125,294,369UniSTS
GeneMap99-GB4 RH Map1555.98UniSTS
NCBI RH Map11226.9UniSTS
MARC_5745-5746:996690776:3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,933,196 - 153,934,816UniSTSGRCh37
Build 361152,199,820 - 152,201,440RGDNCBI36
Celera1127,004,947 - 127,006,567RGD
HuRef1125,295,782 - 125,297,402UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 6
Medium 2431 2753 1696 596 1409 438 4335 2119 3293 398 1410 1604 171 1204 2768 4
Low 4 223 9 9 542 8 21 72 424 18 35 9 3 1 20 2 2
Below cutoff 3 10 19 17 17 3 14 3 9 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF132942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF151829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ271671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL358472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW571711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG704399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM807264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA052424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA354647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA711655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA818910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB001496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY042960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000310483   ⟹   ENSP00000309710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,112 - 153,967,712 (-)Ensembl
RefSeq Acc Id: ENST00000356205   ⟹   ENSP00000348535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,110 - 153,963,537 (-)Ensembl
RefSeq Acc Id: ENST00000368621   ⟹   ENSP00000357610
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,111 - 153,963,462 (-)Ensembl
RefSeq Acc Id: ENST00000368623   ⟹   ENSP00000357612
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,110 - 153,963,475 (-)Ensembl
RefSeq Acc Id: ENST00000413622   ⟹   ENSP00000392229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,960,353 - 153,967,621 (-)Ensembl
RefSeq Acc Id: ENST00000417348   ⟹   ENSP00000407717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,960,454 - 153,963,262 (-)Ensembl
RefSeq Acc Id: ENST00000429040   ⟹   ENSP00000392950
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,960,110 - 153,963,322 (-)Ensembl
RefSeq Acc Id: ENST00000461071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,962,311 - 153,963,139 (-)Ensembl
RefSeq Acc Id: ENST00000537590   ⟹   ENSP00000443632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,099 - 153,963,641 (-)Ensembl
RefSeq Acc Id: ENST00000617697   ⟹   ENSP00000479421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,099 - 153,968,184 (-)Ensembl
RefSeq Acc Id: ENST00000621013   ⟹   ENSP00000484182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,959,099 - 153,963,492 (-)Ensembl
RefSeq Acc Id: NM_001271957   ⟹   NP_001258886
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,963,537 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,332,157 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,100,798 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271958   ⟹   NP_001258887
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,963,537 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,332,430 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,100,798 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271959   ⟹   NP_001258888
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,963,537 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,332,281 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,100,798 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271960   ⟹   NP_001258889
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,968,184 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,336,973 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,105,445 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271961   ⟹   NP_001258890
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,963,537 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,332,430 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,100,798 (-)NCBI
Sequence:
RefSeq Acc Id: NM_014437   ⟹   NP_055252
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,967,725 (-)NCBI
GRCh371153,931,575 - 153,940,660 (-)NCBI
Build 361152,198,212 - 152,206,812 (-)NCBI Archive
HuRef1125,294,161 - 125,303,246 (-)NCBI
CHM1_11155,327,888 - 155,336,521 (-)NCBI
T2T-CHM13v2.01153,096,371 - 153,104,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047418008   ⟹   XP_047273964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,959,110 - 153,967,725 (-)NCBI
RefSeq Acc Id: XM_054336011   ⟹   XP_054191986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01153,096,371 - 153,104,986 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001258886 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258887 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258888 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258889 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258890 (Get FASTA)   NCBI Sequence Viewer  
  NP_055252 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273964 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD27717 (Get FASTA)   NCBI Sequence Viewer  
  AAD34066 (Get FASTA)   NCBI Sequence Viewer  
  AAH02563 (Get FASTA)   NCBI Sequence Viewer  
  AAH03152 (Get FASTA)   NCBI Sequence Viewer  
  AAH07886 (Get FASTA)   NCBI Sequence Viewer  
  AAH14303 (Get FASTA)   NCBI Sequence Viewer  
  BAC11502 (Get FASTA)   NCBI Sequence Viewer  
  BAG52035 (Get FASTA)   NCBI Sequence Viewer  
  BAG56898 (Get FASTA)   NCBI Sequence Viewer  
  BAG60292 (Get FASTA)   NCBI Sequence Viewer  
  BAG62011 (Get FASTA)   NCBI Sequence Viewer  
  CAB59979 (Get FASTA)   NCBI Sequence Viewer  
  CAB59980 (Get FASTA)   NCBI Sequence Viewer  
  CAB82784 (Get FASTA)   NCBI Sequence Viewer  
  CAF86850 (Get FASTA)   NCBI Sequence Viewer  
  CAG33498 (Get FASTA)   NCBI Sequence Viewer  
  EAW53259 (Get FASTA)   NCBI Sequence Viewer  
  EAW53261 (Get FASTA)   NCBI Sequence Viewer  
  EAW53264 (Get FASTA)   NCBI Sequence Viewer  
  EAW53265 (Get FASTA)   NCBI Sequence Viewer  
  EAW53267 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000309710
  ENSP00000309710.6
  ENSP00000348535
  ENSP00000348535.4
  ENSP00000357610
  ENSP00000357610.1
  ENSP00000357612.3
  ENSP00000392229.1
  ENSP00000407717.1
  ENSP00000443632
  ENSP00000443632.2
  ENSP00000479421
  ENSP00000479421.1
  ENSP00000484182
  ENSP00000484182.1
GenBank Protein Q9NY26 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_055252   ⟸   NM_014437
- Peptide Label: isoform a
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q6IAD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258889   ⟸   NM_001271960
- Peptide Label: isoform a
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q6IAD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258890   ⟸   NM_001271961
- Peptide Label: isoform b
- UniProtKB: A0A0A0MTL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258887   ⟸   NM_001271958
- Peptide Label: isoform a
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q6IAD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258888   ⟸   NM_001271959
- Peptide Label: isoform a
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q6IAD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258886   ⟸   NM_001271957
- Peptide Label: isoform a
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q6IAD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000484182   ⟸   ENST00000621013
RefSeq Acc Id: ENSP00000392229   ⟸   ENST00000413622
RefSeq Acc Id: ENSP00000392950   ⟸   ENST00000429040
RefSeq Acc Id: ENSP00000407717   ⟸   ENST00000417348
RefSeq Acc Id: ENSP00000309710   ⟸   ENST00000310483
RefSeq Acc Id: ENSP00000443632   ⟸   ENST00000537590
RefSeq Acc Id: ENSP00000479421   ⟸   ENST00000617697
RefSeq Acc Id: ENSP00000357610   ⟸   ENST00000368621
RefSeq Acc Id: ENSP00000357612   ⟸   ENST00000368623
RefSeq Acc Id: ENSP00000348535   ⟸   ENST00000356205
RefSeq Acc Id: XP_047273964   ⟸   XM_047418008
- Peptide Label: isoform X1
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054191986   ⟸   XM_054336011
- Peptide Label: isoform X1
- UniProtKB: Q9Y2Z7 (UniProtKB/Swiss-Prot),   Q9UBI7 (UniProtKB/Swiss-Prot),   Q9NY26 (UniProtKB/Swiss-Prot),   Q9BTV0 (UniProtKB/Swiss-Prot),   Q8N2H7 (UniProtKB/Swiss-Prot),   Q5T4K1 (UniProtKB/Swiss-Prot),   B4DDY7 (UniProtKB/Swiss-Prot),   Q9Y380 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NY26-F1-model_v2 AlphaFold Q9NY26 1-324 view protein structure

Promoters
RGD ID:6786880
Promoter ID:HG_KWN:5242
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000368621,   ENST00000368623,   OTTHUMT00000090283,   OTTHUMT00000090289,   OTTHUMT00000098817,   UC001FDH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361152,201,746 - 152,203,272 (-)MPROMDB
RGD ID:6786878
Promoter ID:HG_KWN:5243
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:NM_014437,   OTTHUMT00000090287
Position:
Human AssemblyChrPosition (strand)Source
Build 361152,206,266 - 152,206,766 (-)MPROMDB
RGD ID:6857292
Promoter ID:EPDNEW_H1811
Type:initiation region
Name:SLC39A1_1
Description:solute carrier family 39 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1814  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,963,537 - 153,963,597EPDNEW
RGD ID:6857298
Promoter ID:EPDNEW_H1814
Type:initiation region
Name:SLC39A1_2
Description:solute carrier family 39 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1811  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,967,725 - 153,967,785EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12876 AgrOrtholog
COSMIC SLC39A1 COSMIC
Ensembl Genes ENSG00000143570 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000310483 ENTREZGENE
  ENST00000310483.10 UniProtKB/Swiss-Prot
  ENST00000356205 ENTREZGENE
  ENST00000356205.9 UniProtKB/Swiss-Prot
  ENST00000368621 ENTREZGENE
  ENST00000368621.5 UniProtKB/Swiss-Prot
  ENST00000368623.7 UniProtKB/Swiss-Prot
  ENST00000413622.5 UniProtKB/TrEMBL
  ENST00000417348.2 UniProtKB/TrEMBL
  ENST00000537590 ENTREZGENE
  ENST00000537590.5 UniProtKB/TrEMBL
  ENST00000617697 ENTREZGENE
  ENST00000617697.4 UniProtKB/Swiss-Prot
  ENST00000621013 ENTREZGENE
  ENST00000621013.4 UniProtKB/Swiss-Prot
GTEx ENSG00000143570 GTEx
HGNC ID HGNC:12876 ENTREZGENE
Human Proteome Map SLC39A1 Human Proteome Map
InterPro ZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:27173 UniProtKB/Swiss-Prot
NCBI Gene 27173 ENTREZGENE
OMIM 604740 OMIM
PANTHER ZINC TRANSPORTER ZIP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC/IRON TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Zip UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37465 PharmGKB
UniProt A0A0A0MTL8 ENTREZGENE, UniProtKB/TrEMBL
  B4DDY7 ENTREZGENE
  L8ECE7_HUMAN UniProtKB/TrEMBL
  Q5T4K1 ENTREZGENE
  Q5T4K2_HUMAN UniProtKB/TrEMBL
  Q5T4K4_HUMAN UniProtKB/TrEMBL
  Q6IAD8 ENTREZGENE, UniProtKB/TrEMBL
  Q8N2H7 ENTREZGENE
  Q9BTV0 ENTREZGENE
  Q9NY26 ENTREZGENE
  Q9UBI7 ENTREZGENE
  Q9Y2Z7 ENTREZGENE
  Q9Y380 ENTREZGENE
  S39A1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DDY7 UniProtKB/Swiss-Prot
  Q5T4K1 UniProtKB/Swiss-Prot
  Q8N2H7 UniProtKB/Swiss-Prot
  Q9BTV0 UniProtKB/Swiss-Prot
  Q9UBI7 UniProtKB/Swiss-Prot
  Q9Y2Z7 UniProtKB/Swiss-Prot
  Q9Y380 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 SLC39A1  solute carrier family 39 member 1    solute carrier family 39 (zinc transporter), member 1  Symbol and/or name change 5135510 APPROVED