Ncr2 (natural cytotoxicity triggering receptor 2) - Rat Genome Database

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Gene: Ncr2 (natural cytotoxicity triggering receptor 2) Rattus norvegicus
Analyze
Symbol: Ncr2
Name: natural cytotoxicity triggering receptor 2
RGD ID: 1311406
Description: Orthologous to human NCR2 (natural cytotoxicity triggering receptor 2); INTERACTS WITH Cuprizon; glyphosate; methoxychlor.
Type: ncrna
RefSeq Status: MODEL
Previously known as: LOC367216; RGD1311406; similar to RIKEN cDNA B430306N03 gene; triggering receptor expressed on myeloid cells 1-like
RGD Orthologs
Human
Mouse
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,274,057 - 20,324,708 (+)NCBIGRCr8
mRatBN7.2912,777,195 - 12,828,437 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0914,779,496 - 14,787,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0913,700,866 - 13,709,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,229,376 - 8,238,097 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,227,133 - 8,275,380 (+)NCBI
Celera910,590,049 - 10,601,579 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ncr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,274,057 - 20,324,708 (+)NCBIGRCr8
mRatBN7.2912,777,195 - 12,828,437 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0914,779,496 - 14,787,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0913,700,866 - 13,709,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,229,376 - 8,238,097 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,227,133 - 8,275,380 (+)NCBI
Celera910,590,049 - 10,601,579 (+)NCBICelera
Cytogenetic Map9q12NCBI
NCR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,335,608 - 41,350,889 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,335,608 - 41,350,889 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,303,346 - 41,318,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,411,506 - 41,426,603 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,411,504 - 41,426,593NCBI
Celera642,856,966 - 42,872,064 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,022,061 - 41,037,158 (+)NCBIHuRef
CHM1_1641,306,785 - 41,321,882 (+)NCBICHM1_1
T2T-CHM13v2.0641,164,903 - 41,180,184 (+)NCBIT2T-CHM13v2.0
A530064D06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,459,064 - 48,474,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,456,296 - 48,474,443 (-)EnsemblGRCm39 Ensembl
GRCm381748,151,896 - 48,167,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,149,126 - 48,167,275 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,288,846 - 48,304,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,615,089 - 47,630,409 (-)NCBIMGSCv36mm8
Celera1751,587,306 - 51,602,664 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
NCR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1736,545,752 - 36,553,129 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,836,629 - 41,846,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,804,363 - 30,823,729 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604441,332,993 - 41,348,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Ncr2
494 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005489030
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,274,057 - 20,324,708 (+)NCBI
mRatBN7.2912,777,195 - 12,828,437 (+)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311406 AgrOrtholog
BioCyc Gene G2FUF-28294 BioCyc
NCBI Gene 367216 ENTREZGENE
PhenoGen Ncr2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Ncr2  natural cytotoxicity triggering receptor 2  RGD1311406  similar to RIKEN cDNA B430306N03 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311406  similar to RIKEN cDNA B430306N03 gene   RGD1311406_predicted  similar to RIKEN cDNA B430306N03 gene (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311406_predicted  similar to RIKEN cDNA B430306N03 gene (predicted)  LOC367216_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC367216_predicted  similar to RIKEN cDNA B430306N03 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL