Rbm17 (RNA binding motif protein 17) - Rat Genome Database

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Gene: Rbm17 (RNA binding motif protein 17) Rattus norvegicus
Analyze
Symbol: Rbm17
Name: RNA binding motif protein 17
RGD ID: 1311208
Description: Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be part of protein-containing complex. Orthologous to human RBM17 (RNA binding motif protein 17); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291295; splicing factor 45
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,846,941 - 71,863,834 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1771,846,916 - 71,864,431 (+)EnsemblGRCr8
mRatBN7.21766,937,140 - 66,954,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,937,140 - 66,954,014 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1770,422,794 - 70,439,754 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01774,251,622 - 74,268,582 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01768,294,616 - 68,311,577 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1773,219,319 - 73,236,212 (+)NCBI
Lyon_Normotensive1772,499,842 - 72,516,735 (+)NCBI
Lyon_Hypertensive1770,287,878 - 70,304,771 (+)NCBI
F344_StmMcwi1771,436,526 - 71,453,484 (+)NCBI
Rnor_6.01770,586,345 - 70,603,289 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01772,288,967 - 72,305,900 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41778,139,912 - 78,156,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1766,441,566 - 66,458,459 (+)NCBICelera
RGSC_v3.11778,150,744 - 78,167,631 (+)NCBI
Cytogenetic Map17q12.2NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:17589525   PMID:18337722   PMID:25931508  


Genomics

Comparative Map Data
Rbm17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,846,941 - 71,863,834 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1771,846,916 - 71,864,431 (+)EnsemblGRCr8
mRatBN7.21766,937,140 - 66,954,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,937,140 - 66,954,014 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1770,422,794 - 70,439,754 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01774,251,622 - 74,268,582 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01768,294,616 - 68,311,577 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1773,219,319 - 73,236,212 (+)NCBI
Lyon_Normotensive1772,499,842 - 72,516,735 (+)NCBI
Lyon_Hypertensive1770,287,878 - 70,304,771 (+)NCBI
F344_StmMcwi1771,436,526 - 71,453,484 (+)NCBI
Rnor_6.01770,586,345 - 70,603,289 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01772,288,967 - 72,305,900 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41778,139,912 - 78,156,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1766,441,566 - 66,458,459 (+)NCBICelera
RGSC_v3.11778,150,744 - 78,167,631 (+)NCBI
Cytogenetic Map17q12.2NCBI
RBM17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38106,089,034 - 6,117,447 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl106,086,898 - 6,117,457 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37106,130,997 - 6,159,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,171,013 - 6,198,849 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34106,171,012 - 6,198,845NCBI
Celera106,060,328 - 6,088,794 (+)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef106,057,262 - 6,085,729 (+)NCBIHuRef
CHM1_1106,131,060 - 6,159,561 (+)NCBICHM1_1
T2T-CHM13v2.0106,089,199 - 6,117,608 (+)NCBIT2T-CHM13v2.0
Rbm17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,590,250 - 11,608,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,589,270 - 11,608,964 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38211,585,439 - 11,603,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,585,437 - 11,604,153 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37211,507,066 - 11,524,826 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36211,503,292 - 11,521,052 (-)NCBIMGSCv36mm8
Celera211,504,598 - 11,522,403 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.85NCBI
Rbm17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,732,757 - 22,746,014 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495542122,732,757 - 22,745,926 (+)NCBIChiLan1.0ChiLan1.0
RBM17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,642,158 - 18,670,043 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,647,503 - 18,675,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1106,120,488 - 6,140,085 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
RBM17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,828,720 - 29,853,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,829,210 - 29,853,841 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha226,859,360 - 26,884,558 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0230,209,817 - 30,235,027 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl230,209,024 - 30,234,985 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,306,882 - 27,332,090 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,142,934 - 28,168,134 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0228,862,842 - 28,888,059 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbm17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11071,238,880 - 71,264,773 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934432,292,267 - 32,312,839 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,457,462 - 8,478,309 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,457,469 - 8,478,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1064,885,870 - 64,908,963 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11064,886,433 - 64,909,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21070,943,098 - 70,964,954 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap196,257,428 - 6,289,756 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605111,517,551 - 11,549,925 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.196,213,477 - 6,240,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Rbm17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247751,041,666 - 1,067,195 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247751,041,348 - 1,071,194 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl966,521,365 - 66,561,599 (+)Ensembl
Rbm17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11417,618,080 - 17,635,544 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Rbm17
207 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:117
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000025550
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)177061350286062352Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176515487293515804Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176855004093515804Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176369714782818564Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176456982086954580Rat

Markers in Region
AI385205  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21766,952,439 - 66,953,772 (+)MAPPERmRatBN7.2
Rnor_6.01770,601,693 - 70,603,025NCBIRnor6.0
Rnor_5.01772,304,304 - 72,305,636UniSTSRnor5.0
RGSC_v3.41778,155,211 - 78,156,543UniSTSRGSC3.4
Celera1766,456,865 - 66,458,197UniSTS
Cytogenetic Map17q12.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
276 156 729 1591 4065 1011 1728 133 874 489 856 156 5389 2589 448 3978 38 1392 741 909 160 158

Sequence


Ensembl Acc Id: ENSRNOT00000025550   ⟹   ENSRNOP00000025550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1771,846,916 - 71,864,431 (+)Ensembl
mRatBN7.2 Ensembl1766,937,140 - 66,954,014 (+)Ensembl
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101458   ⟹   ENSRNOP00000083361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,937,140 - 66,953,136 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106718   ⟹   ENSRNOP00000083907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1771,847,181 - 71,863,654 (+)Ensembl
mRatBN7.2 Ensembl1766,937,140 - 66,953,854 (+)Ensembl
RefSeq Acc Id: NM_001013058   ⟹   NP_001013076
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,846,941 - 71,863,834 (+)NCBI
mRatBN7.21766,937,140 - 66,954,034 (+)NCBI
Dahl_SR_JrHsd1773,219,319 - 73,236,212 (+)NCBI
Lyon_Normotensive1772,499,842 - 72,516,735 (+)NCBI
Lyon_Hypertensive1770,287,878 - 70,304,771 (+)NCBI
F344_StmMcwi1771,436,526 - 71,453,484 (+)NCBI
Rnor_6.01770,586,394 - 70,603,287 (+)NCBI
Rnor_5.01772,288,967 - 72,305,900 (+)NCBI
RGSC_v3.41778,139,912 - 78,156,805 (+)RGD
Celera1766,441,566 - 66,458,459 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254205   ⟹   XP_006254267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,846,973 - 71,863,834 (+)NCBI
mRatBN7.21766,937,172 - 66,954,034 (+)NCBI
Rnor_6.01770,586,345 - 70,603,289 (+)NCBI
Rnor_5.01772,288,967 - 72,305,900 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001013076   ⟸   NM_001013058
- UniProtKB: Q6AY02 (UniProtKB/TrEMBL),   A0A8I5ZW65 (UniProtKB/TrEMBL),   F7F5H7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254267   ⟸   XM_006254205
- Peptide Label: isoform X1
- UniProtKB: Q6AY02 (UniProtKB/TrEMBL),   A0A8I5ZW65 (UniProtKB/TrEMBL),   F7F5H7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025550   ⟸   ENSRNOT00000025550
Ensembl Acc Id: ENSRNOP00000083907   ⟸   ENSRNOT00000106718
Ensembl Acc Id: ENSRNOP00000083361   ⟸   ENSRNOT00000101458
Protein Domains
G-patch

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY02-F1-model_v2 AlphaFold Q6AY02 1-405 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700556
Promoter ID:EPDNEW_R11080
Type:initiation region
Name:Rbm17_1
Description:RNA binding motif protein 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01770,586,381 - 70,586,441EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311208 AgrOrtholog
BioCyc Gene G2FUF-8797 BioCyc
Ensembl Genes ENSRNOG00000018767 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025550 ENTREZGENE
  ENSRNOT00000025550.8 UniProtKB/TrEMBL
  ENSRNOT00000106718 ENTREZGENE
  ENSRNOT00000106718.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132972 IMAGE-MGC_LOAD
InterPro G_patch UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM17 UniProtKB/TrEMBL
  RNA-recognition_dom1 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SPF45_RRM UniProtKB/TrEMBL
KEGG Report rno:291295 UniProtKB/TrEMBL
MGC_CLONE MGC:94338 IMAGE-MGC_LOAD
NCBI Gene 291295 ENTREZGENE
PANTHER PTHR13288 UniProtKB/TrEMBL
  SPLICING FACTOR 45 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Rbm17 PhenoGen
PIRSF Splicing_factor_SPF45 UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018767 RatGTEx
SMART G_patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5ZW65 ENTREZGENE, UniProtKB/TrEMBL
  F7F5H7 ENTREZGENE, UniProtKB/TrEMBL
  Q6AY02 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rbm17  RNA binding motif protein 17  Rbm17_predicted  RNA binding motif protein 17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rbm17_predicted  RNA binding motif protein 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED