Pum1 (pumilio RNA-binding family member 1) - Rat Genome Database

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Gene: Pum1 (pumilio RNA-binding family member 1) Rattus norvegicus
Analyze
Symbol: Pum1
Name: pumilio RNA-binding family member 1
RGD ID: 1307190
Description: Predicted to enable mRNA 3'-UTR binding activity and miRNA binding activity. Predicted to be involved in several processes, including adult locomotory behavior; positive regulation of RIG-I signaling pathway; and regulation of gene expression. Predicted to act upstream of or within post-transcriptional regulation of gene expression. Located in axon. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Orthologous to human PUM1 (pumilio RNA binding family member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362609; pumilio 1; pumilio 1 (Drosophila) ; pumilio homolog 1; pumilio homolog 1 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85148,120,712 - 148,238,468 (+)NCBIGRCr8
mRatBN7.25142,836,933 - 142,954,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,837,127 - 142,954,039 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,536,390 - 145,653,295 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,306,194 - 147,423,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,302,866 - 147,419,692 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,781,239 - 148,911,776 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,781,222 - 148,911,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,491,253 - 152,616,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,530,471 - 149,651,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,541,510 - 149,661,523 (-)NCBI
Celera5141,299,396 - 141,416,333 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IDA)
cytoplasm  (IBA,ISO)
cytoplasmic stress granule  (ISO)
cytosol  (IBA,ISO)
nucleoplasm  (IEA,ISO)
P-body  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Pum2 Shapes the Transcriptome in Developing Axons through Retention of Target mRNAs in the Cell Body. Martínez JC, etal., Neuron. 2019 Dec 4;104(5):931-946.e5. doi: 10.1016/j.neuron.2019.08.035. Epub 2019 Oct 9.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18776931   PMID:20818387   PMID:21572425   PMID:22342750   PMID:22345517   PMID:22658674   PMID:22681889   PMID:24412312   PMID:25100735   PMID:25340845   PMID:25768905   PMID:26724866  
PMID:28431233   PMID:30361391  


Genomics

Comparative Map Data
Pum1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85148,120,712 - 148,238,468 (+)NCBIGRCr8
mRatBN7.25142,836,933 - 142,954,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,837,127 - 142,954,039 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,536,390 - 145,653,295 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,306,194 - 147,423,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,302,866 - 147,419,692 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,781,239 - 148,911,776 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,781,222 - 148,911,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,491,253 - 152,616,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,530,471 - 149,651,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,541,510 - 149,661,523 (-)NCBI
Celera5141,299,396 - 141,416,333 (+)NCBICelera
Cytogenetic Map5q36NCBI
PUM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38130,931,506 - 31,065,717 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl130,931,506 - 31,065,991 (-)EnsemblGRCh38hg38GRCh38
GRCh37131,404,353 - 31,538,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,176,940 - 31,311,151 (-)NCBINCBI36Build 36hg18NCBI36
Build 34131,073,445 - 31,207,635NCBI
Celera129,660,269 - 29,795,252 (-)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,510,811 - 29,645,305 (-)NCBIHuRef
CHM1_1131,520,440 - 31,654,362 (-)NCBICHM1_1
T2T-CHM13v2.0130,783,767 - 30,917,854 (-)NCBIT2T-CHM13v2.0
Pum1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,390,509 - 130,508,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,390,632 - 130,508,875 (+)EnsemblGRCm39 Ensembl
GRCm384130,663,238 - 130,781,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,663,321 - 130,781,564 (+)EnsemblGRCm38mm10GRCm38
MGSCv374130,219,274 - 130,337,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,935,465 - 130,053,348 (+)NCBIMGSCv36mm8
Celera4128,830,246 - 128,948,823 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Pum1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,487,725 - 9,624,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,487,725 - 9,623,565 (-)NCBIChiLan1.0ChiLan1.0
PUM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,771,734 - 195,908,185 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,888,876 - 195,025,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,205,584 - 30,341,979 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,230,268 - 31,364,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,230,268 - 31,364,348 (-)Ensemblpanpan1.1panPan2
PUM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,907,655 - 70,044,055 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,907,735 - 70,042,680 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,484,975 - 66,620,887 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,471,023 - 70,605,454 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,470,937 - 70,605,454 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,306,399 - 67,440,637 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,303,845 - 68,439,621 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,304,173 - 69,438,252 (+)NCBIUU_Cfam_GSD_1.0
Pum1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,418,544 - 48,538,674 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,243,296 - 14,363,500 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,243,325 - 14,363,461 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,547,320 - 87,687,442 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,546,388 - 87,687,483 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,186,125 - 81,236,287 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PUM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,773,819 - 101,910,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,773,960 - 101,910,519 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603314,746,532 - 14,883,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pum1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,361,012 - 14,486,542 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,361,376 - 14,486,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pum1
311 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:110
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000015831
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat

Markers in Region
RH124281  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25142,937,491 - 142,937,601 (+)MAPPERmRatBN7.2
Rnor_6.05148,894,662 - 148,894,771NCBIRnor6.0
Rnor_5.05152,599,707 - 152,599,816UniSTSRnor5.0
Celera5141,399,797 - 141,399,906UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 9 74 35 41 11 8
Low 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000015831   ⟹   ENSRNOP00000015831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5142,837,127 - 142,954,039 (+)Ensembl
Rnor_6.0 Ensembl5148,781,222 - 148,911,803 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103603   ⟹   ENSRNOP00000094824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5142,837,127 - 142,954,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115266   ⟹   ENSRNOP00000094449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5142,837,127 - 142,954,039 (+)Ensembl
RefSeq Acc Id: NM_001108684   ⟹   NP_001102154
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,277 - 148,238,176 (+)NCBI
mRatBN7.25142,837,127 - 142,954,039 (+)NCBI
Rnor_6.05148,781,267 - 148,911,484 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
RGSC_v3.45149,530,471 - 149,651,267 (-)RGD
Celera5141,299,396 - 141,416,333 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239029   ⟹   XP_006239091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,120,712 - 148,238,468 (+)NCBI
mRatBN7.25142,836,941 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239030   ⟹   XP_006239092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,937 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239031   ⟹   XP_006239093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,938 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239032   ⟹   XP_006239094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,942 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239033   ⟹   XP_006239095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,942 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239034   ⟹   XP_006239096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,939 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239035   ⟹   XP_006239097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,935 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239036   ⟹   XP_006239098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,935 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239037   ⟹   XP_006239099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,936 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239038   ⟹   XP_006239100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,222 - 148,238,468 (+)NCBI
mRatBN7.25142,836,940 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239041   ⟹   XP_006239103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,939 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Rnor_5.05152,491,253 - 152,616,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593516   ⟹   XP_017449005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
mRatBN7.25142,836,938 - 142,954,331 (+)NCBI
Rnor_6.05148,781,239 - 148,911,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110364   ⟹   XP_038966292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,052 - 148,238,468 (+)NCBI
mRatBN7.25142,836,938 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110366   ⟹   XP_038966294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,440 - 148,238,468 (+)NCBI
mRatBN7.25142,837,284 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110368   ⟹   XP_038966296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,222 - 148,238,468 (+)NCBI
mRatBN7.25142,836,940 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110369   ⟹   XP_038966297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,280 - 148,238,468 (+)NCBI
mRatBN7.25142,836,939 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110370   ⟹   XP_038966298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,933 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110371   ⟹   XP_038966299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,934 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110372   ⟹   XP_038966300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,222 - 148,238,468 (+)NCBI
mRatBN7.25142,836,935 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110375   ⟹   XP_038966303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,935 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110376   ⟹   XP_038966304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
mRatBN7.25142,836,936 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_039110377   ⟹   XP_038966305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,222 - 148,238,468 (+)NCBI
mRatBN7.25142,836,940 - 142,954,331 (+)NCBI
RefSeq Acc Id: XM_063288028   ⟹   XP_063144098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,443 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288029   ⟹   XP_063144099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288030   ⟹   XP_063144100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288031   ⟹   XP_063144101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,444 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288032   ⟹   XP_063144102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288033   ⟹   XP_063144103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,442 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288034   ⟹   XP_063144104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288036   ⟹   XP_063144106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288037   ⟹   XP_063144107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288038   ⟹   XP_063144108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288039   ⟹   XP_063144109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288040   ⟹   XP_063144110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288041   ⟹   XP_063144111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288043   ⟹   XP_063144113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288044   ⟹   XP_063144114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,141 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288045   ⟹   XP_063144115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,558 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288046   ⟹   XP_063144116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,285 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288047   ⟹   XP_063144117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,558 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288048   ⟹   XP_063144118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,271 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288049   ⟹   XP_063144119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288051   ⟹   XP_063144121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,060 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288052   ⟹   XP_063144122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,259 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288053   ⟹   XP_063144123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,126,353 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288054   ⟹   XP_063144124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,126,553 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288055   ⟹   XP_063144125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,126,353 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288057   ⟹   XP_063144127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,148 - 148,238,468 (+)NCBI
RefSeq Acc Id: XM_063288058   ⟹   XP_063144128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85148,121,252 - 148,238,468 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102154 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239091 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239092 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239093 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239094 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239095 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239096 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239097 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239098 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239099 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239100 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239103 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449005 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966292 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966294 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966296 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966297 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966298 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966299 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966300 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966303 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966304 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966305 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144098 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144099 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144100 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144101 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144102 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144103 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144104 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144106 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144107 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144108 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144109 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144110 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144111 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144113 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144114 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144115 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144116 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144117 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144118 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144119 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144121 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144122 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144123 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144124 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144125 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144127 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144128 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80597 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015831
  ENSRNOP00000015831.7
  ENSRNOP00000094449
  ENSRNOP00000094449.1
  ENSRNOP00000094824
  ENSRNOP00000094824.1
Reference Protein Sequences
RefSeq Acc Id: NP_001102154   ⟸   NM_001108684
- UniProtKB: A6ISP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239091   ⟸   XM_006239029
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006239093   ⟸   XM_006239031
- Peptide Label: isoform X3
- UniProtKB: D3Z8L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239097   ⟸   XM_006239035
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006239098   ⟸   XM_006239036
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006239094   ⟸   XM_006239032
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006239095   ⟸   XM_006239033
- Peptide Label: isoform X8
- UniProtKB: D3Z8L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239096   ⟸   XM_006239034
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006239092   ⟸   XM_006239030
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239099   ⟸   XM_006239037
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006239100   ⟸   XM_006239038
- Peptide Label: isoform X30
- UniProtKB: A0A8I6ALJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239103   ⟸   XM_006239041
- Peptide Label: isoform X39
- UniProtKB: A0A8I6ALN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449005   ⟸   XM_017593516
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: ENSRNOP00000015831   ⟸   ENSRNOT00000015831
RefSeq Acc Id: XP_038966298   ⟸   XM_039110370
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038966299   ⟸   XM_039110371
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038966300   ⟸   XM_039110372
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038966303   ⟸   XM_039110375
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038966304   ⟸   XM_039110376
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038966292   ⟸   XM_039110364
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966297   ⟸   XM_039110369
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038966296   ⟸   XM_039110368
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038966305   ⟸   XM_039110377
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038966294   ⟸   XM_039110366
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000094824   ⟸   ENSRNOT00000103603
RefSeq Acc Id: ENSRNOP00000094449   ⟸   ENSRNOT00000115266
RefSeq Acc Id: XP_063144100   ⟸   XM_063288030
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144106   ⟸   XM_063288036
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063144107   ⟸   XM_063288037
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063144121   ⟸   XM_063288051
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063144113   ⟸   XM_063288043
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063144114   ⟸   XM_063288044
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063144099   ⟸   XM_063288029
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063144108   ⟸   XM_063288038
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063144102   ⟸   XM_063288032
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063144104   ⟸   XM_063288034
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063144109   ⟸   XM_063288039
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063144119   ⟸   XM_063288049
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063144110   ⟸   XM_063288040
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063144111   ⟸   XM_063288041
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063144127   ⟸   XM_063288057
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063144128   ⟸   XM_063288058
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063144122   ⟸   XM_063288052
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063144118   ⟸   XM_063288048
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063144116   ⟸   XM_063288046
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063144103   ⟸   XM_063288033
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063144098   ⟸   XM_063288028
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063144101   ⟸   XM_063288031
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144115   ⟸   XM_063288045
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063144117   ⟸   XM_063288047
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063144123   ⟸   XM_063288053
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063144125   ⟸   XM_063288055
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063144124   ⟸   XM_063288054
- Peptide Label: isoform X33
Protein Domains
PUM-HD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8L5-F1-model_v2 AlphaFold D3Z8L5 1-1186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694085
Promoter ID:EPDNEW_R4609
Type:multiple initiation site
Name:Pum1_1
Description:pumilio RNA-binding family member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05148,781,244 - 148,781,304EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307190 AgrOrtholog
BioCyc Gene G2FUF-39744 BioCyc
Ensembl Genes ENSRNOG00000011709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015831.7 UniProtKB/TrEMBL
  ENSRNOT00000103603.1 UniProtKB/TrEMBL
  ENSRNOT00000115266.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PUM-HD UniProtKB/TrEMBL
  Pumilio_RNA-bd UniProtKB/TrEMBL
  Pumilio_RNA-bd_rpt UniProtKB/TrEMBL
KEGG Report rno:362609 UniProtKB/TrEMBL
NCBI Gene 362609 ENTREZGENE
PANTHER PUMILIO HOMOLOG 1 UniProtKB/TrEMBL
  RNA BINDING PROTEIN PUMILIO-RELATED UniProtKB/TrEMBL
Pfam PUF UniProtKB/TrEMBL
PhenoGen Pum1 PhenoGen
PROSITE PUM UniProtKB/TrEMBL
  PUM_HD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011709 RatGTEx
SMART Pumilio UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6ALJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALN0 ENTREZGENE, UniProtKB/TrEMBL
  A6ISP6 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8L5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-19 Pum1  pumilio RNA-binding family member 1  Pum1  pumilio homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-20 Pum1  pumilio homolog 1 (Drosophila)  Pum1  pumilio 1 (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pum1  pumilio 1 (Drosophila)   Pum1_predicted  pumilio 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pum1_predicted  pumilio 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED