Mtmr6 (myotubularin related protein 6) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mtmr6 (myotubularin related protein 6) Rattus norvegicus
Analyze
Symbol: Mtmr6
Name: myotubularin related protein 6
RGD ID: 1305378
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate phosphatase activity and phosphatidylinositol-3-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in several cellular components, including endoplasmic reticulum-Golgi intermediate compartment; perinuclear region of cytoplasm; and ruffle membrane. Predicted to be active in cytoplasm and nuclear envelope. Orthologous to human MTMR6 (myotubularin related protein 6); PARTICIPATES IN fructose and mannose metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; manganese(II) chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305935; myotubularin-related protein 6; phosphatidylinositol-3,5-bisphosphate 3-phosphatase; phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR6; phosphatidylinositol-3-phosphate phosphatase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,596,091 - 38,634,023 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)EnsemblGRCr8
mRatBN7.21534,419,931 - 34,457,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,274,857 - 36,312,970 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,425,489 - 37,463,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,881,061 - 35,918,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1537,117,784 - 37,155,897 (+)NCBI
Lyon_Normotensive1536,822,483 - 36,860,596 (+)NCBI
Lyon_Hypertensive1537,126,107 - 37,164,039 (+)NCBI
F344_StmMcwi1536,114,473 - 36,152,585 (+)NCBI
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,121,583 - 34,159,654 (+)NCBICelera
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Phosphatidylinositol 3-phosphatase myotubularin-related protein 6 (MTMR6) is regulated by small GTPase Rab1B in the early secretory and autophagic pathways. Mochizuki Y, etal., J Biol Chem. 2013 Jan 11;288(2):1009-21. doi: 10.1074/jbc.M112.395087. Epub 2012 Nov 27.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15831468   PMID:16787938   PMID:22647598  


Genomics

Comparative Map Data
Mtmr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,596,091 - 38,634,023 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)EnsemblGRCr8
mRatBN7.21534,419,931 - 34,457,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,274,857 - 36,312,970 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,425,489 - 37,463,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,881,061 - 35,918,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1537,117,784 - 37,155,897 (+)NCBI
Lyon_Normotensive1536,822,483 - 36,860,596 (+)NCBI
Lyon_Hypertensive1537,126,107 - 37,164,039 (+)NCBI
F344_StmMcwi1536,114,473 - 36,152,585 (+)NCBI
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,121,583 - 34,159,654 (+)NCBICelera
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Cytogenetic Map15p12NCBI
MTMR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,246,222 - 25,287,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1325,245,495 - 25,287,546 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371325,820,360 - 25,861,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,718,339 - 24,759,704 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341324,719,371 - 24,759,704NCBI
Celera136,884,597 - 6,925,963 (-)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef136,634,667 - 6,676,112 (-)NCBIHuRef
CHM1_11325,788,581 - 25,829,935 (-)NCBICHM1_1
T2T-CHM13v2.01324,455,889 - 24,497,172 (-)NCBIT2T-CHM13v2.0
Mtmr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,488,941 - 60,539,820 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,502,558 - 60,540,442 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381460,265,180 - 60,302,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,265,228 - 60,302,370 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371460,884,065 - 60,921,207 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361459,219,338 - 59,256,480 (+)NCBIMGSCv36mm8
Celera1458,054,681 - 58,091,815 (+)NCBICelera
Cytogenetic Map14D1NCBI
Mtmr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
MTMR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,843,620 - 24,884,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,953,196 - 15,994,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,539,151 - 6,579,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,889,577 - 24,931,192 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,889,582 - 24,930,980 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
MTMR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,182,931 - 14,221,690 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,182,702 - 14,219,613 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2514,262,817 - 14,301,555 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02514,314,112 - 14,352,875 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,314,141 - 14,409,529 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,196,063 - 14,234,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,198,000 - 14,236,750 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,246,944 - 14,285,712 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mtmr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap16119,337,451 - 119,371,722 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024404945116,420,880 - 116,455,391 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366881,033,099 - 1,067,802 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366881,033,153 - 1,067,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100739485
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,188,563 - 3,217,412 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1113,188,560 - 3,217,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,485,812 - 2,491,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap134,710,606 - 4,754,341 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605739,759,917 - 39,804,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.134,638,980 - 4,681,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,638,780 - 4,681,839 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Mtmr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477613,237,244 - 13,281,597 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462477613,237,075 - 13,282,214 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Mtmr6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11264,114,556 - 64,151,012 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Mtmr6
309 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:211
Interacting mature miRNAs:273
Transcripts:ENSRNOT00000065328
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
RH129548  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21534,457,553 - 34,457,735 (+)MAPPERmRatBN7.2
Rnor_6.01540,597,002 - 40,597,183NCBIRnor6.0
Rnor_5.01544,408,925 - 44,409,106UniSTSRnor5.0
RGSC_v3.41539,400,992 - 39,401,173UniSTSRGSC3.4
Celera1534,159,347 - 34,159,528UniSTS
RH 3.4 Map15229.2UniSTS
Cytogenetic Map15p12UniSTS
BE108524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21534,456,613 - 34,456,770 (+)MAPPERmRatBN7.2
Rnor_6.01540,596,062 - 40,596,218NCBIRnor6.0
Rnor_5.01544,407,985 - 44,408,141UniSTSRnor5.0
RGSC_v3.41539,400,052 - 39,400,208UniSTSRGSC3.4
Celera1534,158,407 - 34,158,563UniSTS
RH 3.4 Map15229.1UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
276 156 729 1591 4065 1010 1726 133 873 488 855 156 5388 2589 448 3978 38 1393 741 908 160 158

Sequence


Ensembl Acc Id: ENSRNOT00000065328   ⟹   ENSRNOP00000062812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)Ensembl
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)Ensembl
Rnor_6.0 Ensembl1540,558,963 - 40,597,309 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082665   ⟹   ENSRNOP00000070397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,596,034 - 38,634,025 (+)Ensembl
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)Ensembl
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111768   ⟹   ENSRNOP00000091311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,608,883 - 38,634,025 (+)Ensembl
mRatBN7.2 Ensembl1534,432,723 - 34,457,861 (+)Ensembl
RefSeq Acc Id: NM_001394711   ⟹   NP_001381640
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
Dahl_SR_JrHsd1537,117,784 - 37,155,897 (+)NCBI
Lyon_Normotensive1536,822,483 - 36,860,596 (+)NCBI
Lyon_Hypertensive1537,126,107 - 37,164,039 (+)NCBI
F344_StmMcwi1536,114,473 - 36,152,585 (+)NCBI
RefSeq Acc Id: NM_001394712   ⟹   NP_001381641
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
Dahl_SR_JrHsd1537,117,784 - 37,155,897 (+)NCBI
Lyon_Normotensive1536,822,483 - 36,860,596 (+)NCBI
Lyon_Hypertensive1537,126,107 - 37,164,039 (+)NCBI
F344_StmMcwi1536,114,473 - 36,152,585 (+)NCBI
RefSeq Acc Id: NR_172203
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
Dahl_SR_JrHsd1537,117,784 - 37,155,897 (+)NCBI
Lyon_Normotensive1536,822,483 - 36,860,596 (+)NCBI
Lyon_Hypertensive1537,126,107 - 37,164,039 (+)NCBI
F344_StmMcwi1536,114,473 - 36,152,585 (+)NCBI
Ensembl Acc Id: ENSRNOP00000070397   ⟸   ENSRNOT00000082665
Ensembl Acc Id: ENSRNOP00000062812   ⟸   ENSRNOT00000065328
Ensembl Acc Id: ENSRNOP00000091311   ⟸   ENSRNOT00000111768
RefSeq Acc Id: NP_001381640   ⟸   NM_001394711
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JXT6 (UniProtKB/Swiss-Prot),   A0A8I6AFC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381641   ⟸   NM_001394712
- Peptide Label: isoform 2
- UniProtKB: D3ZC22 (UniProtKB/TrEMBL),   A0A8I6AFC4 (UniProtKB/TrEMBL)
Protein Domains
GRAM   Myotubularin phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXT6-F1-model_v2 AlphaFold A0A0G2JXT6 1-655 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699735
Promoter ID:EPDNEW_R10258
Type:initiation region
Name:Mtmr6_1
Description:myotubularin related protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01540,559,021 - 40,559,081EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305378 AgrOrtholog
BioCyc Gene G2FUF-13534 BioCyc
Ensembl Genes ENSRNOG00000012918 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055012813 UniProtKB/Swiss-Prot
  ENSRNOG00060019195 UniProtKB/Swiss-Prot
  ENSRNOG00065029961 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065328 ENTREZGENE
  ENSRNOT00000082665 ENTREZGENE
  ENSRNOT00000082665.3 UniProtKB/Swiss-Prot
  ENSRNOT00055021920 UniProtKB/Swiss-Prot
  ENSRNOT00060033499 UniProtKB/Swiss-Prot
  ENSRNOT00065051828 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
InterPro MTMR6_PH-GRAM UniProtKB/Swiss-Prot
  Myotubularin-like_Pase_dom UniProtKB/Swiss-Prot
  Myotubularin_fam UniProtKB/Swiss-Prot
  PH-GRAM_MTMR6-9 UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot
  Tyr_Pase_AS UniProtKB/Swiss-Prot
  Tyr_Pase_cat UniProtKB/Swiss-Prot
KEGG Report rno:305935 UniProtKB/Swiss-Prot
NCBI Gene 305935 ENTREZGENE
PANTHER PTHR10807 UniProtKB/Swiss-Prot
  PTHR10807:SF34 UniProtKB/Swiss-Prot
Pfam Myotub-related UniProtKB/Swiss-Prot
  PH-GRAM_MTMR6-like UniProtKB/Swiss-Prot
PhenoGen Mtmr6 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012918 RatGTEx
  ENSRNOG00055012813 RatGTEx
  ENSRNOG00060019195 RatGTEx
  ENSRNOG00065029961 RatGTEx
SMART PTPc_motif UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF52799 UniProtKB/Swiss-Prot
UniProt A0A0G2JXT6 ENTREZGENE
  A0A8I6AFC4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC22 ENTREZGENE, UniProtKB/TrEMBL
  MTMR6_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mtmr6  myotubularin related protein 6   Mtmr6_predicted  myotubularin related protein 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mtmr6_predicted  myotubularin related protein 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED