Gene: MIR4527HG (MIR4527 host gene) Homo sapiens |
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Analyze |
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Symbol: |
MIR4527HG |
Name: |
MIR4527 host gene |
RGD ID: |
12902694 |
HGNC Page |
HGNC:31724 |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 18 | 47,285,724 - 47,594,550 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 18 | 47,285,725 - 47,594,550 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 18 | 44,812,095 - 45,120,921 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 18 | q21.1 | NCBI | | | | | T2T-CHM13v2.0 | 18 | 47,476,014 - 47,784,604 (+) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 663 | Count of miRNA genes: | 549 | Interacting mature miRNAs: | 609 | Transcripts: | ENST00000586905, ENST00000598649, ENST00000600127 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
entire extraembryonic component |
High |
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Medium |
1
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3
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1
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20
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1
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1
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4
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3
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Low |
13
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11
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3
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55
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4
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9
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5
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62
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3
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19
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27
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Below cutoff |
148
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157
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176
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35
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162
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27
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300
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134
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1076
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41
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465
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278
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9
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59
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153
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1
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Sequence
RefSeq Acc Id: |
ENST00000586905 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 18 | 47,285,725 - 47,594,550 (+) | Ensembl |
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RefSeq Acc Id: |
ENST00000598649 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 18 | 47,285,725 - 47,574,733 (+) | Ensembl |
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RefSeq Acc Id: |
ENST00000600127 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 18 | 47,574,596 - 47,587,589 (+) | Ensembl |
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RefSeq Acc Id: |
NR_147192 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 18 | 47,285,724 - 47,594,550 (+) | NCBI | T2T-CHM13v2.0 | 18 | 47,476,014 - 47,784,604 (+) | NCBI |
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Sequence: |
GGAAGGTACTTGCTTCTCCTTTGCCTTGTGCCGTGATTGAGCAGACAATTGAGAGGCCTGGCTC ATGGATGGGTTTGAACCACCTCAGGACTGAAGATGAGCGGCTCAGTTTCACTAACAACAAGAAC AGTGACAAATTCCCTGCCCGGCCCAAGCTCTGTGGTCCTTATGCAGGACCTTCCCCTAGGATAC TGTTCTCTGTGCAGGAGCCTGAGCCTTTCTGCCACCCGACAGTGACTGCCACAGCCAGGATTAA GCCAACTGTCAGCAAAGAAGGAGGAAGATAAACCCTGTGTGCAGACAGAACGGGGGCTGTGTGG GCTGAGGGCACAGAATGTTTCTCCAGCCACCGCAGGAAGCAGCAAGAATACCGAATCCTGGTTG CCTCTGACAATTTTTCCTCTTTTTTTTTTTTTTTTTTCCTTTTTGGAAGCTGGAGATCCCTATG CCAAGCCCTCAAAGCAGCCCCGACTTTCCGTGCAATAAAGCAGCAGTGAGAAAGGCTCAGAGTA ATTAAGTGGCTGACGCACAGAAGAAGCCGTTACAAAGAATTGACTAAATTGCCCATTCATTAGC AGCTCGGCATGGAAGGAGAATTACAAATAGACGGCGGAGCCCGCAGTAATTCAATCTAACCTTG TACTTACAGAAAACAATGAGATAATGAACAGAAAAA
hide sequence
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Promoters
RGD ID: | 15097156 |
Promoter ID: | EPDNEWNC_H1986 |
Type: | single initiation site |
Name: | MIR4527HG_1 |
Description: | MIR4527 host gene [Source:HGNC Symbol;Acc:HGNC:31724] |
SO ACC ID: | SO:0000170 |
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. |
Position: | Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 18 | 47,285,702 - 47,285,762 | EPDNEWNC |
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Additional Information
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