Fsip2 (fibrous sheath interacting protein 2) - Rat Genome Database

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Gene: Fsip2 (fibrous sheath interacting protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Fsip2
Name: fibrous sheath interacting protein 2
RGD ID: 12732154
Description: INVOLVED IN flagellated sperm motility (ortholog); protein localization to cilium (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); long QT syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN sperm connecting piece (ortholog); sperm end piece (ortholog); sperm midpiece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibrous sheath-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303145,316,975 - 145,398,264 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650611,439,867 - 11,521,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Fsip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303145,316,975 - 145,398,264 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650611,439,867 - 11,521,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382185,737,134 - 185,833,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2185,738,804 - 185,833,290 (+)EnsemblGRCh38hg38GRCh38
GRCh372186,603,531 - 186,698,017 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362186,378,006 - 186,406,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 342186,435,772 - 186,456,782RGD
Celera2180,199,128 - 180,293,792 (+)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2178,463,445 - 178,558,017 (+)NCBIHuRef
CHM1_12186,609,231 - 186,703,883 (+)NCBICHM1_1
T2T-CHM13v2.02186,226,199 - 186,322,363 (+)NCBIT2T-CHM13v2.0
Fsip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39282,773,978 - 82,839,281 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl282,773,978 - 82,839,281 (+)EnsemblGRCm39 Ensembl
GRCm38282,943,634 - 83,008,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl282,943,634 - 83,008,937 (+)EnsemblGRCm38mm10GRCm38
MGSCv37282,783,797 - 82,849,094 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36282,775,717 - 82,809,716 (+)NCBIMGSCv36mm8
Celera284,586,210 - 84,651,534 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.08NCBI
Fsip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8388,369,218 - 88,439,756 (+)NCBIGRCr8
mRatBN7.2367,962,345 - 68,032,866 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl367,962,360 - 68,032,868 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0370,285,181 - 70,356,568 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl370,285,219 - 70,356,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0376,820,189 - 76,892,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4366,015,429 - 66,068,760 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera367,361,512 - 67,431,121 (+)NCBICelera
Cytogenetic Map3q24NCBI
Fsip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540312,261,208 - 12,334,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540312,261,233 - 12,334,754 (-)NCBIChiLan1.0ChiLan1.0
FSIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21388,402,843 - 88,502,342 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B88,417,823 - 88,517,322 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B73,019,091 - 73,112,974 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B190,821,633 - 190,915,433 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B190,864,813 - 190,915,369 (+)Ensemblpanpan1.1panPan2
FSIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13628,196,668 - 28,271,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3628,196,493 - 28,271,662 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3628,093,889 - 28,168,700 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03628,422,463 - 28,497,082 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3628,422,370 - 28,497,175 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13628,477,094 - 28,554,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03628,411,024 - 28,485,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03628,583,085 - 28,657,938 (+)NCBIUU_Cfam_GSD_1.0
FSIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1590,901,868 - 91,001,297 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11590,902,067 - 91,000,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215100,859,189 - 100,943,212 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11071,304,678 - 71,397,762 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1071,305,374 - 71,397,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040128,109,852 - 128,202,711 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005324407   ⟹   XP_005324464
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303145,316,975 - 145,398,264 (+)NCBI
SpeTri2.0NW_00493650611,439,867 - 11,521,025 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324464 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3274836 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005324464   ⟸   XM_005324407
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Fsip2 ENTREZGENE