Slc35d2 (solute carrier family 35 member D2)

Gene: Slc35d2 (solute carrier family 35 member D2) Ictidomys tridecemlineatus

Analyze

Symbol:

Slc35d2

Name:

solute carrier family 35 member D2

RGD ID:

12723323

Description:

ENCODES a protein that exhibits nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN Golgi membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	6,065,665 - 6,095,812 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	282,621 - 321,453 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	282,136 - 312,249 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heparan sulfate proteoglycan biosynthetic process (IEA,ISO)

transmembrane transport (IEA)

UDP-glucuronic acid transmembrane transport (IEA)

UDP-N-acetylgalactosamine transmembrane transport (IEA)

UDP-N-acetylglucosamine transmembrane transport (IEA)

Cellular Component

Golgi apparatus (IEA)

Golgi membrane (IEA,ISO)

membrane (IEA)

Molecular Function

antiporter activity (IEA)

nucleotide-sugar transmembrane transporter activity (ISO)

UDP-glucuronic acid transmembrane transporter activity (IEA)

UDP-N-acetylgalactosamine transmembrane transporter activity (IEA)

UDP-N-acetylglucosamine transmembrane transporter activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Slc35d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	6,065,665 - 6,095,812 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	282,621 - 321,453 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	282,136 - 312,249 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	96,313,444 - 96,383,711 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	96,313,444 - 96,383,711 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	99,075,726 - 99,145,993 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	98,122,809 - 98,185,758 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	96,162,543 - 96,225,492	NCBI
Celera	9	69,524,567 - 69,587,574 (-)	NCBI		Celera
Cytogenetic Map	9	q22.32	NCBI
HuRef	9	68,694,273 - 68,756,998 (-)	NCBI		HuRef
CHM1_1	9	99,229,454 - 99,292,473 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	108,485,153 - 108,555,432 (-)	NCBI		T2T-CHM13v2.0

Slc35d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	64,244,122 - 64,277,195 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	64,244,122 - 64,277,182 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	64,096,308 - 64,129,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	64,096,308 - 64,129,368 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	64,197,618 - 64,230,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	64,106,787 - 64,138,533 (-)	NCBI		MGSCv36	mm8
MGSCv36	13	62,922,313 - 62,954,131 (-)	NCBI		MGSCv36	mm8
Celera	13	65,760,015 - 65,793,359 (-)	NCBI		Celera
Cytogenetic Map	13	B3	NCBI
cM Map	13	33.26	NCBI

Slc35d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	992,153 - 1,025,476 (+)	NCBI		GRCr8
mRatBN7.2	17	987,899 - 1,019,747 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	988,157 - 1,019,743 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	1,006,865 - 1,037,986 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	2,549,439 - 2,580,556 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	1,004,285 - 1,035,404 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	1,618,641 - 1,649,734 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	1,618,189 - 1,648,973 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	1,607,754 - 1,638,846 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	6,515,164 - 6,546,280 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	6,514,746 - 6,546,191 (+)	NCBI
Celera	17	1,497,904 - 1,529,023 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Slc35d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	23,517,185 - 23,586,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	23,544,376 - 23,582,585 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC35D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	43,066,359 - 43,129,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	43,068,734 - 43,131,905 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	67,411,201 - 67,481,593 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	95,541,092 - 95,603,415 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SLC35D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	70,487,597 - 70,536,128 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	71,250,628 - 71,299,126 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	70,788,401 - 70,836,855 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	70,600,053 - 70,648,520 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	70,363,312 - 70,411,789 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	71,074,446 - 71,122,895 (+)	NCBI		UU_Cfam_GSD_1.0

SLC35D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	25,738,231 - 25,789,518 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	25,738,208 - 25,789,487 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	29,757,361 - 29,778,433 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	10	29,898,683 - 29,916,032 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	106,745,563 - 106,813,003 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	106,745,650 - 106,812,842 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	95,147,258 - 95,207,866 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	18,169,193 - 18,234,622 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	18,169,182 - 18,321,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013356612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000005638 ⟹ ENSSTOP00000005045

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	282,621 - 321,453 (-)	Ensembl

RefSeq Acc Id:

XM_013356612 ⟹ XP_013212066

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404944	6,065,665 - 6,095,811 (-)	NCBI
SpeTri2.0	NW_004936487	282,136 - 312,249 (-)	NCBI

Sequence:

show sequence

TGTTCCCTTTGCCTCTCCTCTACGTCGGAAACCACCTCAGTGGATTATCAGGCACAAGTAAATT
AAGCCTGCCCATGTTCACGGTGCTCAGGAAGTTCACCATTCCGCTCACCCTGCTCCTGGAGACC
CTCGTCCTCGGGAAACAGTACTCGTTGGGCATCGTGGCCAGTGTCTTTGCCATCATCCTGGGGG
CTTTCATAGCAGCTGGGTCTGACCTTGCTTTTAACCTGGAAGGCTACGTCATTGTATTCCTAAA
TGATATCTTCACGGCAGCAAATGGAGTCTATACCAAGCAGAAAATGGACCCAAAGGAACTAGGG
AAATATGGGGTGCTTTTCTATAATGCCTGCTTCATGATCATTCCAACTCTTATTATTAGTGTCT
CCACCGGAGACCTTCAGCAGGCTACTGAGTTCAACCAGTGGAAGAATGTCCTGTTTGTCCTGCA
GTTTCTTCTTTCCTGTTTTTTGGGGTTCCTCCTGATGTACTCCACGGTTCTGTGCAGCTATTAC
AACTCAGCCCTGACCACGGCGGTGGTTGGTGCCATCAAGAACGTGTCTGTTGCCTACATTGGAA
TGTTGGTTGGTGGAGACTACATTTTCTCCCTATTAAACTTTATAGGGTTAAATATTTGCATGGC
AGGTGGCCTGAGGTACTCCTTCCTGACCCTCAGCGGCCAGCTGAAACCTAAACAGCCCGTGGAT
GAAGAAAGCAGCCCCCTGGATTTGAAGCCTTAGAGTCTGGGGCAGGATGCAGACTGGGGGCCCG
GGGAGGGCATTCCTAGCAGAGCAGCGAGACCAGAAGTTTCCTGCGGGGGACGTCCACCCTGTGG
TCGAAGAGCACCCACAGGAACGTCTGCAAAATGCAAAGACGCTACCTCAACGCACTGCGCCTGG
AGCCCTGGGGCTCTGCACAGAACCTGAGCAGCGGGCAGCGGGCTGCTCAGACGGCCGTGAGACT
TGTGCAGGGACACCAGTGCTCCCCTTCCCTGCCCTGGGCTCTTGGAGGGCGGGAGGGCGACACT
CAGTGGTGACTTTCCTTACCAGCACCTTTGCCTTAATTTCAAGGGTCAGTGAGACCTTTTTTTT
TCCCTCTTAGTTTAAGCAAATCTACTTTAATAAAACTACCCGATGAACTGCCAGGAAAATCGTT
AGCTTTGATTGAAGCTGTGCTGGGGTCTTTTCCATCTTATCAAAATAAAATAAAAAGCCATTTC
TATGTA

hide sequence

RefSeq Acc Id:

XM_040270963 ⟹ XP_040126897

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404944	6,065,665 - 6,095,812 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013212066	(Get FASTA)	NCBI Sequence Viewer
	XP_040126897	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005045.3
GenBank Protein	KAG3293559	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013212066 ⟸ XM_013356612
- Peptide Label:	isoform X1
- UniProtKB:	I3M6F3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFTVLRKFTIPLTLLLETLVLGKQYSLGIVASVFAIILGAFIAAGSDLAFNLEGYVIVFLNDIF TAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVLFVLQFLL SCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGMLVGGDYIFSLLNFIGLNICMAGGL RYSFLTLSGQLKPKQPVDEESSPLDLKP hide sequence

RefSeq Acc Id:	XP_040126897 ⟸ XM_040270963
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000005045 ⟸ ENSSTOT00000005638

Protein Domains

Sugar phosphate transporter

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005639	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005638.3	UniProtKB/TrEMBL
InterPro	Sugar_P_trans_dom	UniProtKB/TrEMBL
NCBI Gene	Slc35d2	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 35	UniProtKB/TrEMBL
	UDP-N-ACETYLGLUCOSAMINE/UDP-GLUCOSE/GDP-MANNOSE TRANSPORTER	UniProtKB/TrEMBL
Pfam	TPT	UniProtKB/TrEMBL
UniProt	I3M6F3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar