Csf3r (colony stimulating factor 3 receptor) - Rat Genome Database

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Gene: Csf3r (colony stimulating factor 3 receptor) Ictidomys tridecemlineatus
Analyze
Symbol: Csf3r
Name: colony stimulating factor 3 receptor
RGD ID: 12720443
Description: ENCODES a protein that exhibits cytokine binding (inferred); cytokine receptor activity (inferred); granulocyte colony-stimulating factor binding (inferred); INVOLVED IN amelogenesis (ortholog); neutrophil chemotaxis (ortholog); regulation of myeloid cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); bacterial pneumonia (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); receptor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: granulocyte colony-stimulating factor receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,052,332 - 53,066,207 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,877,375 - 18,887,530 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,877,036 - 18,887,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csf3r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,052,332 - 53,066,207 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,877,375 - 18,887,530 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,877,036 - 18,887,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF3R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,466,043 - 36,483,314 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,466,043 - 36,483,278 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,931,644 - 36,948,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,704,231 - 36,721,096 (-)NCBINCBI36Build 36hg18NCBI36
Celera135,207,427 - 35,224,699 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef135,048,209 - 35,065,480 (-)NCBIHuRef
CHM1_1137,047,772 - 37,065,042 (-)NCBICHM1_1
T2T-CHM13v2.0136,328,923 - 36,346,193 (-)NCBIT2T-CHM13v2.0
Csf3r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394125,917,241 - 125,938,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4125,918,343 - 125,938,233 (+)EnsemblGRCm39 Ensembl
GRCm384126,023,441 - 126,044,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,024,550 - 126,044,440 (+)EnsemblGRCm38mm10GRCm38
MGSCv374125,701,903 - 125,721,684 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,527,040 - 125,546,743 (+)NCBIMGSCv36mm8
Celera4124,355,298 - 124,375,078 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map459.77NCBI
Csf3r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,583,126 - 143,604,382 (+)NCBIGRCr8
mRatBN7.25138,298,605 - 138,318,224 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,301,506 - 138,317,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,001,001 - 141,020,163 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,771,006 - 142,790,174 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,779,986 - 142,799,148 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,031,353 - 144,051,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,031,402 - 144,051,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,793,488 - 147,820,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,374,596 - 145,394,045 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,387,406 - 145,403,597 (+)NCBI
Celera5136,809,042 - 136,828,201 (+)NCBICelera
Cytogenetic Map5q36NCBI
Csf3r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,411,708 - 14,422,187 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,409,484 - 14,425,818 (-)NCBIChiLan1.0ChiLan1.0
CSF3R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,364,279 - 190,381,151 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,485,632 - 189,502,489 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,730,678 - 35,747,939 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,897,148 - 36,914,398 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,897,153 - 36,910,612 (-)Ensemblpanpan1.1panPan2
CSF3R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,818,985 - 5,832,455 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,822,025 - 5,831,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,062,162 - 6,075,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,954,518 - 5,968,032 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,954,686 - 5,968,102 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,808,137 - 5,821,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,876,012 - 5,889,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,890,652 - 5,904,148 (+)NCBIUU_Cfam_GSD_1.0
CSF3R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,550,161 - 92,565,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,550,159 - 92,565,798 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CSF3R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,380,798 - 96,397,745 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,384,222 - 96,398,618 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603320,341,273 - 20,358,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csf3r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,356,361 - 19,367,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,356,848 - 19,396,209 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005318099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000000614   ⟹   ENSSTOP00000000559
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647418,877,375 - 18,887,530 (-)Ensembl
RefSeq Acc Id: XM_005318099   ⟹   XP_005318156
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505853,052,332 - 53,066,207 (-)NCBI
SpeTri2.0NW_00493647418,877,036 - 18,887,574 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318156 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000559.3
GenBank Protein KAG3282763 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005318156   ⟸   XM_005318099
- UniProtKB: I3LX16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000559   ⟸   ENSSTOT00000000614
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000615 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000614.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Growth/epo_recpt_lig-bind UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  IgC2-like_lig-bd UniProtKB/TrEMBL
NCBI Gene Csf3r ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR UniProtKB/TrEMBL
Pfam EpoR_lig-bind UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Lep_receptor_Ig UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt I3LX16 ENTREZGENE, UniProtKB/TrEMBL