Myl5 (myosin light chain 5) - Rat Genome Database

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Gene: Myl5 (myosin light chain 5) Ictidomys tridecemlineatus
Analyze
Symbol: Myl5
Name: myosin light chain 5
RGD ID: 12720225
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH cherubism (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); retinitis pigmentosa 40 (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin light chain 5, transcript variant X1; myosin light chain 5, transcript variant X2
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,708,608 - 68,715,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,410,270 - 22,413,184 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,410,303 - 22,416,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,708,608 - 68,715,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,410,270 - 22,413,184 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,410,303 - 22,416,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384674,542 - 682,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4673,580 - 682,028 (+)EnsemblGRCh38hg38GRCh38
GRCh374668,331 - 675,817 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364661,711 - 665,817 (+)NCBINCBI36Build 36hg18NCBI36
Build 344661,710 - 665,817NCBI
Cytogenetic Map4p16.3NCBI
HuRef4646,562 - 650,650 (+)NCBIHuRef
CHM1_14671,499 - 675,607 (+)NCBICHM1_1
T2T-CHM13v2.04674,216 - 681,662 (+)NCBIT2T-CHM13v2.0
Myl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955514282,565 - 289,199 (+)NCBIChiLan1.0ChiLan1.0
MYL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23984,318 - 990,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14942,156 - 948,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04723,153 - 725,981 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14708,548 - 715,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4708,548 - 715,897 (+)Ensemblpanpan1.1panPan2
MYL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,738,518 - 91,743,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,738,523 - 91,744,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,203,970 - 94,209,609 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,738,075 - 92,743,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,738,080 - 92,740,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,909,212 - 91,915,202 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,965,140 - 91,970,386 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,346,831 - 92,352,471 (-)NCBIUU_Cfam_GSD_1.0
MYL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8116,711 - 120,301 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,986 - 120,297 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28151,567 - 158,320 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12748,106,168 - 48,112,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2748,106,205 - 48,109,642 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,492,356 - 4,496,313 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026747   ⟹   ENSSTOP00000015590
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647722,410,270 - 22,413,184 (-)Ensembl
RefSeq Acc Id: XM_021722202   ⟹   XP_021577877
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,708,608 - 68,710,835 (-)NCBI
SpeTri2.0NW_00493647722,410,303 - 22,416,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040292887   ⟹   XP_040148821
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,709,114 - 68,710,835 (-)NCBI
RefSeq Acc Id: XM_040292888   ⟹   XP_040148822
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,709,114 - 68,715,390 (-)NCBI
RefSeq Acc Id: XM_040292889   ⟹   XP_040148823
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,708,634 - 68,712,084 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021577877 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148821 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148822 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148823 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015590.2
GenBank Protein KAG3277111 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277112 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021577877   ⟸   XM_021722202
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040148823   ⟸   XM_040292889
- Peptide Label: isoform X4
- UniProtKB: I3MTZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040148822   ⟸   XM_040292888
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040148821   ⟸   XM_040292887
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000015590   ⟸   ENSSTOT00000026747
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025648 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026747.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Myl5 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 5 UniProtKB/TrEMBL
  MYOSIN REGULATORY LIGHT CHAIN 2 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3MTZ5 ENTREZGENE, UniProtKB/TrEMBL