Sap30bp (SAP30 binding protein) - Rat Genome Database

Name: Sap30bp
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Sap30bp (SAP30 binding protein) Ictidomys tridecemlineatus

Analyze

Symbol:

Sap30bp

Name:

SAP30 binding protein

RGD ID:

12707631

Description:

INVOLVED IN modulation by host of symbiont transcription (inferred); regulation of DNA-templated transcription (inferred); response to virus (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN intermediate filament cytoskeleton (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101961847; SAP30 binding protein, transcript variant X1; SAP30 binding protein, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SAP30BP (SAP30 binding protein)	NCBI	Ortholog
Mus musculus (house mouse):	Sap30bp (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sap30bp (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sap30bp (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SAP30BP (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SAP30BP (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SAP30BP (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SAP30BP (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sap30bp (SAP30 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	862,822 - 902,768 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	862,822 - 903,900 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

modulation by host of symbiont transcription (IEA)

regulation of DNA-templated transcription (IEA)

response to virus (IEA)

Cellular Component

intermediate filament cytoskeleton (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sap30bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	862,822 - 902,768 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	862,822 - 903,900 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SAP30BP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	75,667,338 - 75,708,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	75,667,251 - 75,708,062 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	73,663,418 - 73,704,139 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	71,174,994 - 71,215,734 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	70,253,482 - 70,294,229 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,087,224 - 69,127,975 (+)	NCBI		HuRef
CHM1_1	17	73,728,123 - 73,768,856 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	76,560,524 - 76,601,245 (+)	NCBI		T2T-CHM13v2.0

Sap30bp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	115,824,477 - 115,857,547 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	115,824,108 - 115,857,551 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	115,933,578 - 115,965,534 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	115,933,282 - 115,966,725 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	115,794,973 - 115,826,848 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	115,749,749 - 115,781,624 (+)	NCBI		MGSCv36	mm8
Celera	11	127,696,719 - 127,728,590 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.91	NCBI

Sap30bp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	101,664,714 - 101,697,430 (+)	NCBI		GRCr8
mRatBN7.2	10	101,165,777 - 101,198,503 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	101,165,856 - 101,198,502 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	106,227,399 - 106,259,000 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	105,690,487 - 105,722,088 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,086,783 - 101,118,282 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	104,483,011 - 104,514,513 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	104,483,042 - 104,515,684 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	103,770,845 - 103,802,350 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	106,039,460 - 106,070,965 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	99,740,759 - 99,772,259 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Sap30bp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	6,535,566 - 6,575,624 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	6,535,566 - 6,574,690 (-)	NCBI	ChiLan1.0	ChiLan1.0

SAP30BP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	91,711,614 - 91,752,088 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	96,536,171 - 96,576,456 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	69,618,005 - 69,658,716 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	75,168,180 - 75,208,875 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	75,168,185 - 75,208,840 (+)	Ensembl	panpan1.1		panPan2

SAP30BP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,866,613 - 4,902,692 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,867,878 - 4,902,617 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	5,546,839 - 5,582,915 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	5,537,436 - 5,573,696 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	5,537,439 - 5,573,642 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	5,576,878 - 5,613,112 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	5,686,957 - 5,723,022 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	5,747,840 - 5,784,085 (-)	NCBI		UU_Cfam_GSD_1.0

SAP30BP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	5,695,257 - 5,732,220 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	5,695,254 - 5,732,246 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	5,641,654 - 5,678,641 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SAP30BP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,970,535 - 46,013,168 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	45,968,900 - 46,012,958 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	16,729,871 - 16,772,875 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sap30bp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	5,567,847 - 5,605,866 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	5,568,359 - 5,605,765 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013361658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001229984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000012995 ⟹ ENSSTOP00000011645

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936594	862,822 - 902,768 (+)	Ensembl

RefSeq Acc Id:

XM_005332567 ⟹ XP_005332624

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI
SpeTri2.0	NW_004936594	862,822 - 903,900 (+)	NCBI

Sequence:

show sequence

ACCTTTCCCAACTCTAAGATAAACCCCTGGGAATAGCCTGTCAGGTACAACCCCTACAACCTTA
CATCCGTCGCGCGATGATGACGTAAACAAGCGCAGACCTGAGGGATGGGCCAGGTTCAGAAACG
GCGGTTTTGATTGGCTACCCTCGGTCGCGGCGTCTCCTGGGATCCGGAAGAAGTTGATTTTCCT
CACGGAAGTCGTCGTCTTTGAGTCATAGGTGTGAGCCACGCCCAAGCTGTGGGAATAAAATGGC
GGGGAAGAAGAACGTTCTGTCGTCTCTGGCGGTTTACGCGGAGGATTCAGAACCCGAGTCTGAT
GGCGAAGCTGGAATCGAAGCTGTGGGCGGCGCGGCTGAAGAGAAAGGTGGATTGGTGTCTGATG
CCTATGGAGATGATGACTTTTCTCGCCCAGGGGGTGATGAAGATGGTTATGAAGAAGAGGAAGA
CGAGAACAGCAAACAGTCGGAAGATGACGATTCAGAGACTGAAAAACCTGAGGCTGATGACCCA
AAGGATAACACAGAAGTAGAGAAGCGAGATCCCCAAGAACTAGTTGCCTCCTTTTCCGAAAGGG
TCCGGAACATGTCGCCTGATGAAATCAAGATCCCACCAGAACCCCCTGGCAGGTGTTCTAATCA
TTTACAAGACAAGATCCAGAAGCTTTATGAGCGAAAGATAAAGGAGGGAATGGATATGAATTAC
ATCATCCAAAGGAAGAAAGAATTTCGGAACCCTAGCATCTATGAGAAACTGATCCAGTTCTGTG
CCATTGATGAGCTGGGCACCAACTACCCAAAGGATATGTTTGACCCCCATGGCTGGTCTGAGGA
TTCCTACTATGAGGCATTAGCCAAGGCCCAGAAGATTGAAATGGACAAATTGGAAAAAGCCAAA
AAGGAGCGAACCAAAATTGAGTTTGTGACGGGCACCAAGAAAGGCACCACCACCAATGCCACAG
CTACCACCACAACCACTGCCAGCACAGCCGTCGCAGATGCCCAAAAGAGAAAGAGCAAGTGGGA
CTCCGCCATCCCAGTGACGACAATAGCGCAGCCCACCATTCTCACCACCACTGCCACCCTGCCA
GCGGTAGTCACTGTCACCACCAGCGCCAGCGGCTCCAAGACCACAGTCATCTCTGCTGTGGGCA
CCATCGTGAAGAAAGCCAAGCAGTGACAGAGCCATGCCAGGGCTTGACTGTGCAGCCTAGTGGC
TGCTGTATATTTCAGGACTTGGACCTGCTCCCAAGGTGCCATCTGAGAGGAGCCTCTGTGTGGC
ATTCCAACCAGAAGGACATTGTAGCAGAGGCAAAGGATACAGCAGATAGGGTCTGTCTGTCCAC
ACACCACTTTGGGGTCTCACCCAATTAAAAGTGTCGTGTTCTTCTGTCCCAGCATCTGGGGTAC
ACTGGCCTCTCCCACGGTTTGTTTGCAGGCAAATGTGAAGCTCAAATGCTCCCTCCATCTTCTT
ATTCATGATTATTGATTGCCTAAGGATTGATAGTGGGGTGATGGAAGCCTGTGGCACTGCTCAG
AGGGGTGCCCCAGTAAGTCACTGATTGTTCCCACTGTCTGCCTCTTGGCATGCTCAGGTGTGGC
CCCAGGGAGGAGAGTGAGGCCTCTGGTTCTTAAGCAAGAGCAGACCTCAGCTGTCTTGGTGCAA
TTGAGCACTCTACAGGCCGCTTCTTGGACATGCCCAGGCTTTCAGAATTAGGCTAGGTACCAGA
AAGGCTGGGGTGAGATCCCCAATGTGCACCAGAGGGGGTTGGTATGGGCACCTGGCCAAGGCCA
CCTAGTCCCTTAGTGCCCAGCAGGCGCAGCCAGTGAGATCTGCAGTCGGGGAGATGAATCACCT
CCTGCTCTGGCCGGCAGCAGTTCATTGTTTATGTGAAAGCACTGCTCCTGGGAGAGCTGCTGCC
ACCCCACCCTTCCTCTGTTGTTATCTCTGCCCAGCAGCAGTCCCTGGGCAACACCAATGGCTGA
CCAGCTTCTCTTGGGCCAAAATGGGTTTCCCAACCACCACCAGCCTGAGAGTAGAGGGGGCAGT
TTGCCTTTGAGGTCTCTGGCAGCTCTGGTCCAGCGGAAGCGCTGAGTGTCAAAGAAGGAAGCCG
GGCTGTGAAAAGCTGTAGATTCCATGGGCCCGGCACAGACTGAGAAAGGTGGTCTTGAAATTGA
TGCCTGGTACTGTTATGTGATCTGAGGAATATGACAAACTATCCCTAATGTCGCCAAAATAAAA
ATAGTCACTCTTGCCCCATCTTATCCTTGGGACTTGGCCACCCTGGGGGAATTGCTGCTGCCTG
CTCATCCTAAGAGGGTCTTTGTAAAGGCCCCCTTGCTCTCAGGCTCTGGGGGTTCCCCCATAGC
CAAGGATACCAGGAGGTCTAGTAGAAGGCAGTGCAGCAGGGAAACAGAGTGCCAAGTACAGTGG
GCATCCACTGGTCTGGCATCCTGGCCTAAAGCAAGTCCTGTGGTCTGTATGCCACTCTGTCAAA
TCAGCAATAAAGCTTCATGCAGA

hide sequence

RefSeq Acc Id:

XM_013361658 ⟹ XP_013217112

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI
SpeTri2.0	NW_004936594	862,822 - 903,900 (+)	NCBI

Sequence:

show sequence

ACCTTTCCCAACTCTAAGATAAACCCCTGGGAATAGCCTGTCAGGTACAACCCCTACAACCTTA
CATCCGTCGCGCGATGATGACGTAAACAAGCGCAGACCTGAGGGATGGGCCAGGTTCAGAAACG
GCGGTTTTGATTGGCTACCCTCGGTCGCGGCGTCTCCTGGGATCCGGAAGAAGTTGATTTTCCT
CACGGAAGTCGTCGTCTTTGAGTCATAGGTGTGAGCCACGCCCAAGCTGTGGGAATAAAATGGC
GGGGAAGAAGAACGTTCTGTCGTCTCTGGCGGTTTACGCGGAGGATTCAGAACCCGAGTCTGAT
GGCGAAGCTGGAATCGAAGCTGTGGGCGGCGCGGCTGAAGAGAAAGGTGGATTGGTGTCTGATG
CCTATGGAGATGATGACTTTTCTCGCCCAGGGGGTGATGAAGATGGTTATGAAGAAGAGGAAGA
CGAGAACAGCAAACAGTCGGATAACACAGAAGTAGAGAAGCGAGATCCCCAAGAACTAGTTGCC
TCCTTTTCCGAAAGGGTCCGGAACATGTCGCCTGATGAAATCAAGATCCCACCAGAACCCCCTG
GCAGGTGTTCTAATCATTTACAAGACAAGATCCAGAAGCTTTATGAGCGAAAGATAAAGGAGGG
AATGGATATGAATTACATCATCCAAAGGAAGAAAGAATTTCGGAACCCTAGCATCTATGAGAAA
CTGATCCAGTTCTGTGCCATTGATGAGCTGGGCACCAACTACCCAAAGGATATGTTTGACCCCC
ATGGCTGGTCTGAGGATTCCTACTATGAGGCATTAGCCAAGGCCCAGAAGATTGAAATGGACAA
ATTGGAAAAAGCCAAAAAGGAGCGAACCAAAATTGAGTTTGTGACGGGCACCAAGAAAGGCACC
ACCACCAATGCCACAGCTACCACCACAACCACTGCCAGCACAGCCGTCGCAGATGCCCAAAAGA
GAAAGAGCAAGTGGGACTCCGCCATCCCAGTGACGACAATAGCGCAGCCCACCATTCTCACCAC
CACTGCCACCCTGCCAGCGGTAGTCACTGTCACCACCAGCGCCAGCGGCTCCAAGACCACAGTC
ATCTCTGCTGTGGGCACCATCGTGAAGAAAGCCAAGCAGTGACAGAGCCATGCCAGGGCTTGAC
TGTGCAGCCTAGTGGCTGCTGTATATTTCAGGACTTGGACCTGCTCCCAAGGTGCCATCTGAGA
GGAGCCTCTGTGTGGCATTCCAACCAGAAGGACATTGTAGCAGAGGCAAAGGATACAGCAGATA
GGGTCTGTCTGTCCACACACCACTTTGGGGTCTCACCCAATTAAAAGTGTCGTGTTCTTCTGTC
CCAGCATCTGGGGTACACTGGCCTCTCCCACGGTTTGTTTGCAGGCAAATGTGAAGCTCAAATG
CTCCCTCCATCTTCTTATTCATGATTATTGATTGCCTAAGGATTGATAGTGGGGTGATGGAAGC
CTGTGGCACTGCTCAGAGGGGTGCCCCAGTAAGTCACTGATTGTTCCCACTGTCTGCCTCTTGG
CATGCTCAGGTGTGGCCCCAGGGAGGAGAGTGAGGCCTCTGGTTCTTAAGCAAGAGCAGACCTC
AGCTGTCTTGGTGCAATTGAGCACTCTACAGGCCGCTTCTTGGACATGCCCAGGCTTTCAGAAT
TAGGCTAGGTACCAGAAAGGCTGGGGTGAGATCCCCAATGTGCACCAGAGGGGGTTGGTATGGG
CACCTGGCCAAGGCCACCTAGTCCCTTAGTGCCCAGCAGGCGCAGCCAGTGAGATCTGCAGTCG
GGGAGATGAATCACCTCCTGCTCTGGCCGGCAGCAGTTCATTGTTTATGTGAAAGCACTGCTCC
TGGGAGAGCTGCTGCCACCCCACCCTTCCTCTGTTGTTATCTCTGCCCAGCAGCAGTCCCTGGG
CAACACCAATGGCTGACCAGCTTCTCTTGGGCCAAAATGGGTTTCCCAACCACCACCAGCCTGA
GAGTAGAGGGGGCAGTTTGCCTTTGAGGTCTCTGGCAGCTCTGGTCCAGCGGAAGCGCTGAGTG
TCAAAGAAGGAAGCCGGGCTGTGAAAAGCTGTAGATTCCATGGGCCCGGCACAGACTGAGAAAG
GTGGTCTTGAAATTGATGCCTGGTACTGTTATGTGATCTGAGGAATATGACAAACTATCCCTAA
TGTCGCCAAAATAAAAATAGTCACTCTTGCCCCATCTTATCCTTGGGACTTGGCCACCCTGGGG
GAATTGCTGCTGCCTGCTCATCCTAAGAGGGTCTTTGTAAAGGCCCCCTTGCTCTCAGGCTCTG
GGGGTTCCCCCATAGCCAAGGATACCAGGAGGTCTAGTAGAAGGCAGTGCAGCAGGGAAACAGA
GTGCCAAGTACAGTGGGCATCCACTGGTCTGGCATCCTGGCCTAAAGCAAGTCCTGTGGTCTGT
ATGCCACTCTGTCAAATCAGCAATAAAGCTTCATGCAGA

hide sequence

RefSeq Acc Id:

XM_040268443 ⟹ XP_040124377

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI

RefSeq Acc Id:

XM_040268444 ⟹ XP_040124378

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI

RefSeq Acc Id:

XM_040268445 ⟹ XP_040124379

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,508,055 - 5,548,938 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005332624	(Get FASTA)	NCBI Sequence Viewer
	XP_013217112	(Get FASTA)	NCBI Sequence Viewer
	XP_040124377	(Get FASTA)	NCBI Sequence Viewer
	XP_040124378	(Get FASTA)	NCBI Sequence Viewer
	XP_040124379	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011645.2
GenBank Protein	KAG3268484	(Get FASTA)	NCBI Sequence Viewer
	KAG3268485	(Get FASTA)	NCBI Sequence Viewer
	KAG3268486	(Get FASTA)	NCBI Sequence Viewer
	KAG3268487	(Get FASTA)	NCBI Sequence Viewer
	KAG3268488	(Get FASTA)	NCBI Sequence Viewer
	KAG3268489	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013217112 ⟸ XM_013361658

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGGAAEEKGGLVSDAYGDDDFSRPGGDEDGYEEE
EDENSKQSDNTEVEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIK
EGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEM
DKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTIL
TTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ

hide sequence

RefSeq Acc Id:	XP_005332624 ⟸ XM_005332567
- Peptide Label:	isoform X3
- UniProtKB:	I3MK60 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGGAAEEKGGLVSDAYGDDDFSRPGGDEDGYEEE EDENSKQSEDDDSETEKPEADDPKDNTEVEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCS NHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWS EDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSK WDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ hide sequence

RefSeq Acc Id:	XP_040124378 ⟸ XM_040268444
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040124379 ⟸ XM_040268445
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040124377 ⟸ XM_040268443
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSSTOP00000011645 ⟸ ENSSTOT00000012995

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012995	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012995.3	UniProtKB/TrEMBL
InterPro	SAP30BP	UniProtKB/TrEMBL
NCBI Gene	Sap30bp	ENTREZGENE
PANTHER	PTHR13464	UniProtKB/TrEMBL
	SAP30-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	HCNGP	UniProtKB/TrEMBL
UniProt	I3MK60	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-09	Sap30bp	SAP30 binding protein	LOC101961847	SAP30 binding protein	Symbol and/or name change	5135510	APPROVED
2021-03-26	LOC101961847	SAP30 binding protein	Sap30bp	SAP30 binding protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD