Morn4 (MORN repeat containing 4) - Rat Genome Database

Name: Morn4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Morn4 (MORN repeat containing 4) Ictidomys tridecemlineatus

Analyze

Symbol:

Morn4

Name:

MORN repeat containing 4

RGD ID:

12704192

Description:

INVOLVED IN response to axon injury (inferred); FOUND IN stereocilium tip (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

MORN repeat-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	36,049,888 - 36,060,537 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	2,089,062 - 2,099,614 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	2,089,013 - 2,099,651 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

response to axon injury (IEA)

Cellular Component

cell projection (IEA)

cytoplasm (IEA)

filopodium tip (IEA)

stereocilium (IEA)

stereocilium tip (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Morn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	36,049,888 - 36,060,537 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	2,089,062 - 2,099,614 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	2,089,013 - 2,099,651 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MORN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	97,614,555 - 97,634,156 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	97,614,553 - 97,633,500 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	99,374,312 - 99,393,913 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	99,364,300 - 99,383,903 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	99,364,300 - 99,383,227	NCBI
Celera	10	93,111,622 - 93,131,220 (-)	NCBI		Celera
Cytogenetic Map	10	q24.2	NCBI
HuRef	10	93,000,269 - 93,019,932 (-)	NCBI		HuRef
CHM1_1	10	99,656,044 - 99,675,672 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	98,494,762 - 98,514,356 (-)	NCBI		T2T-CHM13v2.0

Morn4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	42,063,378 - 42,074,815 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	42,063,378 - 42,074,796 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	42,074,939 - 42,086,376 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	42,074,939 - 42,086,357 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	42,149,429 - 42,160,860 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	42,128,253 - 42,132,444 (-)	NCBI		MGSCv36	mm8
Celera	19	42,878,810 - 42,890,009 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	35.72	NCBI

Morn4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	250,837,639 - 250,847,943 (-)	NCBI		GRCr8
mRatBN7.2	1	240,888,338 - 240,898,644 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	240,888,344 - 240,898,716 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	249,033,786 - 249,044,093 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	255,730,920 - 255,741,227 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	248,383,948 - 248,394,255 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	261,323,079 - 261,333,383 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	261,323,083 - 261,333,383 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	268,775,551 - 268,785,855 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	248,764,890 - 248,775,194 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	249,023,640 - 249,033,239 (+)	NCBI
Celera	1	236,722,836 - 236,733,176 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

Morn4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	3,713,483 - 3,724,990 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	3,713,483 - 3,725,303 (-)	NCBI	ChiLan1.0	ChiLan1.0

MORN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	109,526,610 - 109,546,299 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	109,531,929 - 109,551,619 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	94,235,061 - 94,254,509 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	97,728,039 - 97,746,747 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

MORN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	10,873,435 - 10,885,350 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	10,874,318 - 10,884,047 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	11,058,441 - 11,070,381 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	11,198,629 - 11,210,578 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	11,198,636 - 11,210,494 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	10,859,758 - 10,871,868 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	10,920,315 - 10,932,241 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	11,060,135 - 11,072,079 (-)	NCBI		UU_Cfam_GSD_1.0

MORN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	108,987,752 - 108,999,598 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	108,987,739 - 108,999,610 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	118,491,716 - 118,503,858 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MORN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	90,775,224 - 90,794,745 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	90,776,920 - 90,780,252 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	51,674,719 - 51,694,488 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Morn4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	9,257,196 - 9,267,516 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	9,257,195 - 9,271,259 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040273413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040273414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024825 ⟹ ENSSTOP00000017701

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936636	2,089,062 - 2,099,614 (+)	Ensembl

RefSeq Acc Id:

XM_005335261 ⟹ XP_005335318

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	36,049,892 - 36,060,537 (+)	NCBI
SpeTri2.0	NW_004936636	2,089,013 - 2,099,651 (+)	NCBI

Sequence:

show sequence

CCTCCGGTGGGACAGGCGGTGGAAGTGGCGGAGAGGAAGGTGGAAGGGGGAGAGCCAGGCGGAG
GAAAGGTTTCTGCCGCCGAAGCCCCGCTTTGGGGCGTGACAGTAGTCCCGAAAGGCCGAGCCCC
GGTCGGCTGGCAGCACGGGTGAGAGGGGGCCGCGAGAGAATGGTCAGCCAGGTAGGGACAGAGG
AGCCAAGCGGATGACCTGGGCTGGGGAACGCGGCTTCAACCTGATGCCCTGACCCGAGGGCGGC
TGCCTGGGGAGGGTACCAAGCCCAGCACTTGAGTTTAGACCACTCGTCGAGTCTCGGAAGAGCG
CGCAGCACCCGGGTTAGCGGTCAGAGTATGAGGGGCTGCGTCTGGAGGGAATGACAGAACTGTG
TGAACTGAAGAACCTGCGGGGCTGGAGAGCAAACCCAGATTTCATCTTTTTCTTCTGTAAACTG
TCACCATGACCCTGACAAAAGGTTCTTTCACCTACTCCAGTGGGGAGGAATATCATGGCGAGTG
GAAGGAGGGCCGCAGGCATGGTTATGGTCAACTGCTGTTTGCAGATGGTGGCACCTATCTGGGT
CATTTTGAGAATGGGCTCTTTAATGGCTTTGGGGTACTGACCTTTTCAGATGGTTCAAGGTATG
AGGGGGAGTTTGCCCAGGGCAAGTTTAATGGCGTTGGAGTCTTCATTCGGCACGACAACATGAC
CTTTGAGGGGGAATTTAAAAATGGCAGAGTAGATGGTTTTGGCCTGCTGACTTTCCCTGATGGT
TCTCATGGAATACCCCGCAACGAAGGTCTATTTGAGAACAATAAACTGCTGCGGCGGGAGAAGT
GTTCTGCGGTAGTTCAGCGGGCCCAGAGTGCCTCCAAGTCCGCCAGAAATCTCACTGCTTGATG
GGGCAGTGGGCACAGCTGGAATAGTGTCAGTAAAGCCCATGACCACCTGAGATGAACAGAATGA
ACCAGATCTCAGATGAGATGAGGATGACCACGGAGCCGAAGCCTGTGATGTGTCCCATCACCTG
CCAATCAGCAATTTGATCACAGAAAGTGCTAAGGATTTTGGCCCAAAGACCCCGCAGTGGTTAG
CAGATCTGTCTTTTCCTGATGCTTATTTGCTGAAGACAGGAGCTGTGTTTTCTTACTTGTCGAC
ATTTCCTGTTCTTGAGACCTGGGGTTACCCAGTACAGAGTGGCTGCAGCCTTCACTCCATTTAC
TGCCAAGTGATTCAGAATCTCCTCATTCTGCCTGTGTTTGGGCACATGACCCTAGCCCCCACTT
AGGGCCAATGCTGGGTGCTGCCCTGGCAAAATGAGGTACAAGATAGACAGTACAGTGACCCTGT
GAAAGTCGGGCCAGAACTTCTGTGTACATGAGCCCCTCATTCAGTGCAGTTTGAATCCTGGCTC
CAGGCTCCAACTTTGTCTGATCAGACTAGTCTTTGTGTCTGCTTATTTCCCCTATGAAGGATCT
GGTAAGAGTGTTGTTTTCTTCTTTCTTGACTTTACAAGTCATGTTCTTTACCTGAGTTAGGGCA
TATATTCCAATCTCCATTTGTGTCTCTCCGTCCTTAGAGTCTATCAGACAGAATCCCTTTGTGG
TATAGTCAAGAAAGAAACTGATGTAATAGTAACCTCATAAGTTGTATTCATTACTCACTCCAGG
TCAAGGGGCAGACATATCCGGCCTCAAGGCCTTCCTGGGGGGTGGACTAAGTGTTGGGGAAGGC
CTGCATCGACATAGTTCTTTCCCTATAGGTGGTAGATCAGACTCACCTACACCCCTGGGTGTAG
GTAGACTCACACCCACCCTGGGACTGTGGTGAACTAAAAGCATTGGCTGTTCCTCGCATTTGAC
TTGCTATAACTCTCCCACCAAGAGCCTTGATCTTCAGGCCTTGGTCAGATTTTGGAAGGTGGAA
TCCCTATACAGTTCATCATGAGGCCTCCAGTTACCACAGGACCCAGACACACCCCCAGCTGCCA
TCCTCACACTGAATCTTCCTCAATAGCAGACTATGGTGGAAATTATAACCGTGTGCCTCTATTT
ATTCTGTGAACTGTATTGTAGAATCAAGTGTTCATAGAAATAAACAAATCACCAGATCTGCCTA

hide sequence

RefSeq Acc Id:

XM_040273413 ⟹ XP_040129347

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	36,049,890 - 36,060,537 (+)	NCBI

RefSeq Acc Id:

XM_040273414 ⟹ XP_040129348

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	36,049,888 - 36,060,537 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335318	(Get FASTA)	NCBI Sequence Viewer
	XP_040129347	(Get FASTA)	NCBI Sequence Viewer
	XP_040129348	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017701.1
GenBank Protein	KAG3264347	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335318 ⟸ XM_005335261
- UniProtKB:	I3N005 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLTKGSFTYSSGEEYHGEWKEGRRHGYGQLLFADGGTYLGHFENGLFNGFGVLTFSDGSRYEG EFAQGKFNGVGVFIRHDNMTFEGEFKNGRVDGFGLLTFPDGSHGIPRNEGLFENNKLLRREKCS AVVQRAQSASKSARNLTA hide sequence

RefSeq Acc Id:	XP_040129348 ⟸ XM_040273414
- UniProtKB:	I3N005 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040129347 ⟸ XM_040273413
- UniProtKB:	I3N005 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000017701 ⟸ ENSSTOT00000024825

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026926	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024825.2	UniProtKB/TrEMBL
Gene3D-CATH	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/TrEMBL
InterPro	MORN	UniProtKB/TrEMBL
NCBI Gene	Morn4	ENTREZGENE
PANTHER	MORN REPEAT-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
	MORN REPEAT-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	MORN	UniProtKB/TrEMBL
SMART	MORN	UniProtKB/TrEMBL
Superfamily-SCOP	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/TrEMBL
UniProt	I3N005	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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