S100a10 (S100 calcium binding protein A10) - Rat Genome Database

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Gene: S100a10 (S100 calcium binding protein A10) Ictidomys tridecemlineatus
Analyze
Symbol: S100a10
Name: S100 calcium binding protein A10
RGD ID: 12701716
Description: ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Disease Models (ortholog); depressive disorder (ortholog); FOUND IN plasma membrane protein complex (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505823,129,202 - 23,132,450 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365802,159,185 - 2,168,007 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365802,159,582 - 2,162,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
S100a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505823,129,202 - 23,132,450 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365802,159,185 - 2,168,007 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365802,159,582 - 2,162,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,982,915 - 151,993,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,982,915 - 151,993,859 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,955,391 - 151,966,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,222,010 - 150,233,338 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,768,466 - 148,779,369NCBI
Celera1125,070,031 - 125,081,361 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,333,289 - 123,344,620 (-)NCBIHuRef
CHM1_11153,350,637 - 153,361,966 (-)NCBICHM1_1
T2T-CHM13v2.01151,106,434 - 151,117,380 (-)NCBIT2T-CHM13v2.0
S100a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39393,462,424 - 93,471,952 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl393,462,387 - 93,471,950 (+)EnsemblGRCm39 Ensembl
GRCm38393,555,117 - 93,564,645 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl393,555,080 - 93,564,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv37393,359,039 - 93,368,567 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36393,640,568 - 93,650,047 (+)NCBIMGSCv36mm8
Celera393,527,294 - 93,536,975 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.51NCBI
S100a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82181,904,454 - 181,913,101 (+)NCBIGRCr8
mRatBN7.22179,221,012 - 179,229,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2179,220,887 - 179,229,661 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2186,781,747 - 186,790,413 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02184,763,422 - 184,772,055 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02179,424,873 - 179,433,539 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02193,892,589 - 193,901,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2193,892,589 - 193,901,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02210,966,302 - 210,974,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42186,645,674 - 186,654,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12186,595,779 - 186,604,427 (+)NCBI
Celera2171,057,114 - 171,065,762 (-)NCBICelera
Cytogenetic Map2q34NCBI
S100a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955589435,798 - 446,361 (+)NCBIChiLan1.0ChiLan1.0
S100A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,829,200 - 97,840,350 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,580,445 - 97,591,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,341,974 - 127,353,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,985,312 - 130,995,130 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,985,312 - 130,995,130 (-)Ensemblpanpan1.1panPan2
S100A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,984,138 - 60,994,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,427,818 - 60,438,527 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01762,003,340 - 62,014,053 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX121,424,516 - 121,424,809 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1762,003,348 - 62,013,987 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,829,811 - 60,840,517 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,915,981 - 60,926,690 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,645,403 - 61,656,113 (-)NCBIUU_Cfam_GSD_1.0
S100A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,261,815 - 97,272,513 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,261,752 - 97,272,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,272,262 - 106,283,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,690,580 - 11,701,561 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603811,248,480 - 11,259,640 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,597,942 - 19,608,271 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477219,597,909 - 19,608,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021730475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000020555   ⟹   ENSSTOP00000018388
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365802,159,185 - 2,168,007 (-)Ensembl
RefSeq Acc Id: XM_021730475   ⟹   XP_021586150
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505823,129,202 - 23,132,450 (-)NCBI
SpeTri2.0NW_0049365802,159,582 - 2,162,832 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021586150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018388.1
GenBank Protein KAG3281565 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021586150   ⟸   XM_021730475
- UniProtKB: I3N1Z2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018388   ⟸   ENSSTOT00000020555
Protein Domains
S100/CaBP-9k-type calcium binding subdomain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023215 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020555.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  S100-A10 UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100a10 ENTREZGENE
PANTHER PTHR11639:SF74 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3N1Z2 ENTREZGENE, UniProtKB/TrEMBL