Efcab11 (EF-hand calcium binding domain 11) - Rat Genome Database

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Gene: Efcab11 (EF-hand calcium binding domain 11) Ictidomys tridecemlineatus
Analyze
Symbol: Efcab11
Name: EF-hand calcium binding domain 11
RGD ID: 12694668
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand calcium-binding domain-containing protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,840,745 - 14,994,771 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,074,126 - 17,228,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,075,493 - 17,228,234 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Efcab11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,840,745 - 14,994,771 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,074,126 - 17,228,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,075,493 - 17,228,234 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381489,794,669 - 89,954,777 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1489,794,669 - 89,954,777 (-)EnsemblGRCh38hg38GRCh38
GRCh371490,261,013 - 90,421,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,333,222 - 89,490,842 (-)NCBINCBI36Build 36hg18NCBI36
Build 341489,331,093 - 89,490,786NCBI
Celera1470,310,740 - 70,468,290 (-)NCBICelera
Cytogenetic Map14q32.11NCBI
HuRef1470,437,426 - 70,595,017 (-)NCBIHuRef
CHM1_11490,201,442 - 90,358,992 (-)NCBICHM1_1
T2T-CHM13v2.01484,018,846 - 84,178,973 (-)NCBIT2T-CHM13v2.0
Efcab11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391299,683,790 - 99,849,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1299,659,304 - 99,850,698 (-)EnsemblGRCm39 Ensembl
GRCm381299,692,195 - 99,884,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1299,693,045 - 99,884,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712100,955,741 - 101,121,652 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612100,118,581 - 100,284,492 (-)NCBIMGSCv36mm8
Celera12100,940,390 - 101,105,944 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.25NCBI
Efcab11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86124,738,531 - 124,892,623 (-)NCBIGRCr8
mRatBN7.26119,008,908 - 119,162,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,008,919 - 119,162,046 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6119,155,004 - 119,313,090 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06119,451,823 - 119,609,895 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06118,786,680 - 118,944,754 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06123,742,971 - 123,894,714 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6123,743,064 - 123,894,826 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06132,968,485 - 133,119,982 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46123,936,251 - 124,094,113 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6116,542,993 - 116,695,699 (-)NCBICelera
Cytogenetic Map6q32NCBI
Efcab11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,267,722 - 12,420,869 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,269,610 - 12,420,775 (-)NCBIChiLan1.0ChiLan1.0
EFCAB11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21590,933,594 - 91,099,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11490,159,438 - 90,316,097 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01470,414,351 - 70,573,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11489,766,772 - 89,925,341 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1489,769,013 - 89,925,224 (-)Ensemblpanpan1.1panPan2
EFCAB11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1860,876,210 - 61,021,581 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl860,876,646 - 61,023,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha860,456,854 - 60,601,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0861,148,335 - 61,293,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl861,148,767 - 61,295,778 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1860,830,096 - 60,975,099 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0860,878,814 - 61,023,887 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0861,206,729 - 61,351,908 (-)NCBIUU_Cfam_GSD_1.0
EFCAB11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7111,600,717 - 111,766,205 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17111,574,771 - 111,766,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,137,693 - 118,330,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12467,507,804 - 67,672,991 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2467,507,047 - 67,671,627 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605354,817,472 - 54,975,455 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efcab11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473412,416,030 - 12,601,310 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473412,414,914 - 12,601,221 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000040484   ⟹   ENSSTOP00000026181
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648817,074,126 - 17,228,263 (-)Ensembl
RefSeq Acc Id: XM_013356787   ⟹   XP_013212241
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,840,745 - 14,994,771 (+)NCBI
SpeTri2.0NW_00493648817,075,493 - 17,228,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040274815   ⟹   XP_040130749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,840,745 - 14,866,685 (+)NCBI
RefSeq Acc Id: XM_040274816   ⟹   XP_040130750
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,840,745 - 14,994,771 (+)NCBI
RefSeq Acc Id: XM_040274818   ⟹   XP_040130752
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864014,840,745 - 14,868,484 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013212241 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130749 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130750 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130752 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000026181.1
GenBank Protein KAG3260535 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013212241   ⟸   XM_013356787
- Peptide Label: isoform X2
- UniProtKB: A0A287CY29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130750   ⟸   XM_040274816
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040130752   ⟸   XM_040274818
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040130749   ⟸   XM_040274815
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000026181   ⟸   ENSSTOT00000040484
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029608 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000040484.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Efcab11 ENTREZGENE
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287CY29 ENTREZGENE, UniProtKB/TrEMBL