Trak2 (trafficking kinesin protein 2)

Gene: Trak2 (trafficking kinesin protein 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Trak2

Name:

trafficking kinesin protein 2

RGD ID:

12683640

Description:

ENCODES a protein that exhibits enzyme binding (ortholog); GABA receptor binding (ortholog); kinesin binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); dendritic transport of mitochondrion (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); dendrite (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

trafficking kinesin protein 2, transcript variant X1; trafficking kinesin protein 2, transcript variant X2; trafficking kinesin protein 2, transcript variant X3; trafficking kinesin protein 2, transcript variant X4; trafficking kinesin protein 2, transcript variant X5; trafficking kinesin protein 2, transcript variant X6; trafficking kinesin-binding protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,519 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	649,418 - 708,820 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	649,413 - 708,816 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

common variable immunodeficiency 1 (ISO)

Experimental Liver Cirrhosis (ISO)

Neurodevelopmental Disorders (ISO)

Pulmonary Arterial Hypertension (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde axonal transport of mitochondrion (IEA)

anterograde dendritic transport of mitochondrion (IEA)

dendrite morphogenesis (ISO)

dendritic transport of mitochondrion (ISO)

endosome to lysosome transport (ISO)

mitochondrion distribution (IEA)

negative regulation of axonogenesis (ISO)

neurogenesis (IEA)

protein O-linked glycosylation (ISO)

protein targeting (IEA)

regulation of transcription by RNA polymerase II (ISO)

vesicle transport along microtubule (IEA)

Cellular Component

axon cytoplasm (IEA)

axonal growth cone (ISO)

cytoplasm (ISO)

cytoplasmic vesicle (IEA)

dendrite (IEA,ISO)

dendrite cytoplasm (IEA)

early endosome (ISO)

mitochondrion (IEA)

neuronal cell body (ISO)

nucleus (ISO)

plasma membrane (ISO)

Molecular Function

enzyme binding (ISO)

GABA receptor binding (IEA,ISO)

kinesin binding (ISO)

myosin binding (IEA)

protein binding (ISO)

signaling receptor binding (ISO)

TPR domain binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Trak2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,519 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	649,418 - 708,820 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	649,413 - 708,816 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	201,377,207 - 201,451,458 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	201,377,207 - 201,451,500 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	202,241,930 - 202,316,181 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	201,950,175 - 202,024,499 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	202,067,436 - 202,141,760	NCBI
Celera	2	195,993,770 - 196,068,264 (-)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	194,090,332 - 194,144,077 (-)	NCBI		HuRef
CHM1_1	2	202,247,949 - 202,322,415 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	201,857,884 - 201,933,333 (-)	NCBI		T2T-CHM13v2.0

Trak2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	58,939,608 - 59,013,509 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	58,939,608 - 59,012,589 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	58,900,449 - 58,974,345 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	58,900,449 - 58,973,430 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	58,957,294 - 59,030,326 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	58,844,996 - 58,891,044 (-)	NCBI		MGSCv36	mm8
Celera	1	59,419,476 - 59,489,206 (-)	NCBI		Celera
Cytogenetic Map	1	C1.3	NCBI
cM Map	1	29.2	NCBI

Trak2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	67,842,680 - 67,909,786 (-)	NCBI		GRCr8
mRatBN7.2	9	60,348,531 - 60,414,036 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	60,350,012 - 60,413,996 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	68,844,354 - 68,909,801 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,960,314 - 74,025,761 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	72,278,580 - 72,344,037 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,698,706 - 65,763,351 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,698,712 - 65,763,273 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	65,505,448 - 65,570,090 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	57,474,682 - 57,540,751 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	57,624,566 - 57,661,312 (-)	NCBI
Celera	9	57,788,961 - 57,853,095 (-)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

Trak2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	206,146 - 261,326 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	205,372 - 261,210 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRAK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	104,000,055 - 104,075,173 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	104,015,054 - 104,090,173 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	88,630,665 - 88,705,709 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	206,785,541 - 206,861,102 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	206,785,541 - 206,861,102 (-)	Ensembl	panpan1.1		panPan2

TRAK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	10,457,985 - 10,521,432 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	10,461,104 - 10,497,820 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	11,341,722 - 11,405,148 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	10,362,764 - 10,426,223 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	10,362,766 - 10,426,177 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	10,343,403 - 10,406,849 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	10,322,444 - 10,385,866 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	10,315,865 - 10,379,295 (-)	NCBI		UU_Cfam_GSD_1.0

TRAK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	104,991,726 - 105,055,025 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	104,991,261 - 105,056,054 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	116,383,936 - 116,416,217 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	87,022,038 - 87,096,685 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	87,022,043 - 87,096,666 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	112,322,842 - 112,398,263 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trak2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624899	300,096 - 332,392 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624899	275,291 - 335,555 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005338905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002933 ⟹ ENSSTOP00000002623

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936726	653,226 - 689,895 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000035352 ⟹ ENSSTOP00000026894

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936726	671,567 - 689,895 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000041380 ⟹ ENSSTOP00000031940

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936726	649,418 - 708,820 (-)	Ensembl

RefSeq Acc Id:

XM_005338904 ⟹ XP_005338961

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,519 (-)	NCBI
SpeTri2.0	NW_004936726	651,918 - 708,816 (-)	NCBI

Sequence:

show sequence

ATTGACCCAGCGTCACTGCAGAATCGAGGTCGCCGAGTGATGATGTGAAGTCGCCCGCCCTTCC
CTGCCACGCCCGAGTGGTTACTGGCTGCGGCGGCAGCTTGGGCTGCTGCTCTCAGGCTGCCGCC
GCTTCTGGGGCTTATTCCTGAGGTATTGGGGGCGGAGGACGGCAGACGCCGGGCCATTCCAGTC
ATGACTGTCCAAGTGATGATAATCACATGAGAGCACTCATTGCTGCAGATGCTGTTTGACTCAT
CAGAGAAAATCTGTGCAAAAGAAAATATCCATATGCCTACTTCTATTTCTTTATTAAATGGCTT
GATGGATTTCCTTTACTCTGATTCATACCAAAGCTGTCCTTTTCAACCAAAGCAAGAAAGGATC
CTGCATGAGTCAGTCGCAGAATGCCATTTTTACATCACCAACAGGTGAAGAGAACCTCATGAGT
AGCAATCACAGAGACTCGGAGAGCATCACTGATGTCTGCTCCAATGAGGATCTCCCTGAAGTTG
AGCTGGTGAATCTGCTAGAAGAACAGCTACCACAGTATAAGCTAAGAGTAGACTCACTCTTTCT
GTATGAAAATCAGGACTGGACACAGTCGCCACAGCACCAGCACCATGCATCTGATGCCCTCTCT
CCAGTCCTTGCTGAAGAGACTTTCCGTTACATGATTCTAGGTACAGACAGAGTGGAGCAGATGA
CCAAAACTTACAATGACATTGACATGGTTACACATCTCCTTGCAGAGAGAGATCGTGATCTGGA
GCTAGCTGCTCGAATTGGACAAGCTCTCTTAAAGCGGAATCATGTCTTGTCTGAGCAAAATGAA
GCCTTGGAAGAGCAATTGGGACAAGCCTTTGATCAAGTTAATCAGCTGCAACATGAGCTATCCA
AGAAAGATGAATTACTTCGAATCGTCTCTATTGCTTCTGAAGAAAGTGAAACTGATTCCAGCTG
TTCTACACCTCTTAGGTTCAATGAGTCCTTTAGCTTATCTCAAGGTTTGCTACAGCTGGACATG
CTACAAGAAAAGCTCAAGGAACTGGAAGAAGAGAACATGGCTCTTCGATCCAAGGCTTGTCATA
TAAAGACAGAAACTTGTACTTATGAAGAGAAGGAACAACAGCTTGTGAATGACTGTGTTAAAGA
ACTTCGAGAAACAAATGCTCAGATGTCCAAAATGACTGAAGAATTGTCAGGGAAGAGTGATGAA
CTGATTCGATACCAAGAGGAGATCTCCTCGCTTTTGTCTCAGATTGTAGATCTGCAGCACAAAC
TTAAAGAACATGTGATTGAAAAGGAAGAACTAAGACTTCACCTACAAGCTTCCAAAGATGCCCA
GCGACAACTGACAATGGAGCTACATGAGTTACAAGACAGGAATATGGAGTGTTTGGGAATGTTA
CATGAATCCCAAGAAGAAATAAAGGAACTTCGTAGCAGATCTGGCCCTGCTGCTCATCTGTACT
TCTCTCAATCTTATGGAGCTTTTACTGGGGAATCTTTGGCAGCTGAGATTGAGGGGACCATGCG
TAAAAAGTTGAGTTTGGATGAGGAATCTCTCTTTAAGCAAAAAGCCCAACAGAAACGGGTGTTT
GATACTGTCAAGGTTGCAAATGACACACGGGGCCGCTCTGTCCCATTTCCAGCTCTGCTACCCA
TCCCAGGCTCAAACCGTTCAAGTGTCATCATGACAGCAAAACCTTTTGAGTCTGGTGTACAGCA
AACAGAGGACAAAACACTCCCAAACCCAGGGAGCAACTCAGAGGAGGCTCCAGGGAGCTCTCAG
TCGGTGAGCCAGCCAGAACCTTCAGAAGACAGTGATTTGGCTACAGCACTACATCGCCTCAGCC
TGCGTCGACAGAACTACTTAAGTGAGAAGCAGTTCTTTGCTGAAGAGTGGGAACGGAAGATCCG
GGTTCTAGCTGACCAAAAAGAAGGGGTTAGTGGTTATGACACTCCCACAGAGAGCCTTGCATCT
GTTTGCACCGACCAGTCAGAGATCACAGACCTCAGCAGTGCCAGTTGCCTTCGAGGCTTTATGC
CAGAAAAATTACAAATCGTCAAGCCCCTTGAAGGATCACAAACTCTACATCACTGGCAGCAGCT
TGCTCAACCAAACTTGGGAACTATTCTTGATCCACGACCAGGTGTCATTACTAAAGGCTTTACC
CAGTTGCCCAAAGGTGCCGTCTATCACATCTCAGATTTAGAGGAGGATGAAGAGGAGGGCATCA
CTTTTCAGGTTCAGCAGCCTCTTCATATGGAGCAGAAACCTGCAGTATCCAAACCAGTAACAGG
GATCTTCCTACCACCCATTTCTTCAACAGTTGGACCAGTTGCAGTTTCAACCTCAAACCCAGGA
AAGTGTCTGTCATGCACGAACTCGACATTCACCTTCACCACCTGTAGGATATTACATCCCTCTG
ATATCACTCAGGTTACCCCTAGCTCTGGATTCCCTTCGCTATCCTGTGGAAGTAGTGGGAATAG
TTCATCGAACACAGCTATGAATTCTCCTGCCATGTCCTATAGACTCAGCATTGGTGAATCCATC
ACAAACCGACGAGATTCTACTGTAACCTTCAGTAGCACCATGAGCTTGGCCAAACTTCTTCAGG
AGCGTGGCATCTCTGCTAAAGTGTACCACAGCCCAATTTCAGAGAATCCCCTTCTCACGCCTCT
TCCAAAAGCCCTTGCTATCCCTTCCACACCTCCAAATTCCCCATCTCATTCACCATGCCCCTCT
CCCTTGCCCTTTGAGACCCGAGTGCATCTCTCTGAAAATTTTTTGGCCTCCCGTCCAGCTGAAA
CATTCCTCCAGGAAATGTATGGCTTGAGACCTTCCCGGAACCCTCCTGATGTTGGCCAGTTGAA
AATGAACCTAGTGGATAGGCTGAAGCGACTAGGGATAGCCAGAGTCGTCAAGACCCCTGCCAGC
CAGGAGAATGGAAAAAGCCAAGAGGTAGAAATCAGCCTACAAAAACCAGACTCTGCTGTTTATT
TAAATTCCGGTAGCAGCTTAATGGGTGGACTGAGAAGGAATCAGAGTCTTCCAGTCATGCTGGG
TAGCTTTGGTGTCCCTGTTTGCACATCCTCGCCCAAAATGAGTATCCTGAAGGAGGACTGAAAC
TCATCATTAACTGAACCCTTGTACAGATTAGCACATGAAGGATTGATATGCACTGATACAAGCA
ATCTAGTCTGACTTGAGAGAAAAGGAATGTTGCAGAAGGGTTGTGAATGTGGAGAGGGCAGTGG
AGGTGTGGAAACAAGATTGGGCTGAGGTCCCTGTGGATGAAGTCTGGTAAATTGAAAGTAGAAA
CGAATGAGCCATGAGTGTTTCGAGAAAGAAAAGAAAGGTTTAACAATCTTTCAGTTGAGTTTTC
TTGTCTTGAAAATAAAAAATGAATAGAAATTCAATAGTATTAGACCACACCAGAAAACTGAACT
TGCTGATACCTTTACTTCTGATGAGCATAGCAGGACGGGAAGAGAAAAAGAGCAACTTTGACGG
TCACTCAGAGAAAGCTCTTCCAAAAGGTTGGTGTGGTGATTTCAGTCTGTTACTCGGATGGTAT
CGAGATGCTCAAATGTTACTCTGCTAATGTCTGGTTAAATCATGCATCCATCTAATGGTGTGCT
CATAGCATTCGCAAAACAAGGAATTTTATCTTTTTAGTTACATCATAAGTTGAGACTCCTTTTT
TCCTGTTTTCAGGCCTTTGAGCCACTGTGAGCTCAAATGCCATCCAAATTCCTTCATATTAATG
ATAATTGAAAGCTCATTTCTAAATTTGTATTTTTATACAATATCCAAA

hide sequence

RefSeq Acc Id:

XM_005338905 ⟹ XP_005338962

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,474 (-)	NCBI
SpeTri2.0	NW_004936726	652,609 - 708,757 (-)	NCBI

Sequence:

show sequence

CTTCCCTGCCACGCCCGAGTGGTTACTGGCTGCGGCGGCAGCTTGGGCTGCTGCTCTCAGGCTG
CCGCCGCTTCTGGGGCTTATTCCTGAGGTATTGGGGGCGGAGGACGGCAGACGCCGGGCCATTC
CATAAAATTCTCACAAAAGAAGAGGAGGACCTGTGCTTTTCTTGGGAGGCAGTAAAGAAAGAAC
AGTGTGTATTCAGAGCCAGCCTAGGAAACAGAACACAGGTCATGACTGTCCAAGTGATGATAAT
CACATGAGAGCACTCATTGCTGCAGATGCTGTTTGACTCATCAGAGAAAATCTGTGCAAAAGAA
AATATCCATATGCCTACTTCTATTTCTTTATTAAATGGCTTGATGGATTTCCTTTACTCTGATT
CATACCAAAGCTGTCCTTTTCAACCAAAGCAAGAAAGGATCCTGCATGAGTCAGTCGCAGAATG
CCATTTTTACATCACCAACAGGTGAAGAGAACCTCATGAGTAGCAATCACAGAGACTCGGAGAG
CATCACTGATGTCTGCTCCAATGAGGATCTCCCTGAAGTTGAGCTGGTGAATCTGCTAGAAGAA
CAGCTACCACAGTATAAGCTAAGAGTAGACTCACTCTTTCTGTATGAAAATCAGGACTGGACAC
AGTCGCCACAGCACCAGCACCATGCATCTGATGCCCTCTCTCCAGTCCTTGCTGAAGAGACTTT
CCGTTACATGATTCTAGGTACAGACAGAGTGGAGCAGATGACCAAAACTTACAATGACATTGAC
ATGGTTACACATCTCCTTGCAGAGAGAGATCGTGATCTGGAGCTAGCTGCTCGAATTGGACAAG
CTCTCTTAAAGCGGAATCATGTCTTGTCTGAGCAAAATGAAGCCTTGGAAGAGCAATTGGGACA
AGCCTTTGATCAAGTTAATCAGCTGCAACATGAGCTATCCAAGAAAGATGAATTACTTCGAATC
GTCTCTATTGCTTCTGAAGAAAGTGAAACTGATTCCAGCTGTTCTACACCTCTTAGGTTCAATG
AGTCCTTTAGCTTATCTCAAGGTTTGCTACAGCTGGACATGCTACAAGAAAAGCTCAAGGAACT
GGAAGAAGAGAACATGGCTCTTCGATCCAAGGCTTGTCATATAAAGACAGAAACTTGTACTTAT
GAAGAGAAGGAACAACAGCTTGTGAATGACTGTGTTAAAGAACTTCGAGAAACAAATGCTCAGA
TGTCCAAAATGACTGAAGAATTGTCAGGGAAGAGTGATGAACTGATTCGATACCAAGAGGAGAT
CTCCTCGCTTTTGTCTCAGATTGTAGATCTGCAGCACAAACTTAAAGAACATGTGATTGAAAAG
GAAGAACTAAGACTTCACCTACAAGCTTCCAAAGATGCCCAGCGACAACTGACAATGGAGCTAC
ATGAGTTACAAGACAGGAATATGGAGTGTTTGGGAATGTTACATGAATCCCAAGAAGAAATAAA
GGAACTTCGTAGCAGATCTGGCCCTGCTGCTCATCTGTACTTCTCTCAATCTTATGGAGCTTTT
ACTGGGGAATCTTTGGCAGCTGAGATTGAGGGGACCATGCGTAAAAAGTTGAGTTTGGATGAGG
AATCTCTCTTTAAGCAAAAAGCCCAACAGAAACGGGTGTTTGATACTGTCAAGGTTGCAAATGA
CACACGGGGCCGCTCTGTCCCATTTCCAGCTCTGCTACCCATCCCAGGCTCAAACCGTTCAAGT
GTCATCATGACAGCAAAACCTTTTGAGTCTGGTGTACAGCAAACAGAGGACAAAACACTCCCAA
ACCCAGGGAGCAACTCAGAGGAGGCTCCAGGGAGCTCTCAGTCGGTGAGCCAGCCAGAACCTTC
AGAAGACAGTGATTTGGCTACAGCACTACATCGCCTCAGCCTGCGTCGACAGAACTACTTAAGT
GAGAAGCAGTTCTTTGCTGAAGAGTGGGAACGGAAGATCCGGGTTCTAGCTGACCAAAAAGAAG
GGGTTAGTGGTTATGACACTCCCACAGAGAGCCTTGCATCTGTTTGCACCGACCAGTCAGAGAT
CACAGACCTCAGCAGTGCCAGTTGCCTTCGAGGCTTTATGCCAGAAAAATTACAAATCGTCAAG
CCCCTTGAAGGATCACAAACTCTACATCACTGGCAGCAGCTTGCTCAACCAAACTTGGGAACTA
TTCTTGATCCACGACCAGGTGTCATTACTAAAGGCTTTACCCAGTTGCCCAAAGGTGCCGTCTA
TCACATCTCAGATTTAGAGGAGGATGAAGAGGAGGGCATCACTTTTCAGGTTCAGCAGCCTCTT
CATATGGAGCAGAAACCTGCAGTATCCAAACCAGTAACAGGGATCTTCCTACCACCCATTTCTT
CAACAGTTGGACCAGTTGCAGTTTCAACCTCAAACCCAGGAAAGTGTCTGTCATGCACGAACTC
GACATTCACCTTCACCACCTGTAGGATATTACATCCCTCTGATATCACTCAGGTTACCCCTAGC
TCTGGATTCCCTTCGCTATCCTGTGGAAGTAGTGGGAATAGTTCATCGAACACAGCTATGAATT
CTCCTGCCATGTCCTATAGACTCAGCATTGGTGAATCCATCACAAACCGACGAGATTCTACTGT
AACCTTCAGTAGCACCATGAGCTTGGCCAAACTTCTTCAGGAGCGTGGCATCTCTGCTAAAGTG
TACCACAGCCCAATTTCAGAGAATCCCCTTCTCACGCCTCTTCCAAAAGCCCTTGCTATCCCTT
CCACACCTCCAAATTCCCCATCTCATTCACCATGCCCCTCTCCCTTGCCCTTTGAGACCCGAGT
GCATCTCTCTGAAAATTTTTTGGCCTCCCGTCCAGCTGAAACATTCCTCCAGGAAATGTATGGC
TTGAGACCTTCCCGGAACCCTCCTGATGTTGGCCAGTTGAAAATGAACCTAGTGGATAGGCTGA
AGCGACTAGGGATAGCCAGAGTCGTCAAGACCCCTGCCAGCCAGGAGAATGGAAAAAGCCAAGA
GGTAGAAATCAGCCTACAAAAACCAGACTCTGCTGTTTATTTAAATTCCGGTAGCAGCTTAATG
GGTGGACTGAGAAGGAATCAGAGTCTTCCAGTCATGCTGGGTAGCTTTGGTGTCCCTGTTTGCA
CATCCTCGCCCAAAATGAGTATCCTGAAGGAGGACTGA

hide sequence

RefSeq Acc Id:

XM_040294701 ⟹ XP_040150635

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,476 (-)	NCBI

RefSeq Acc Id:

XM_040294702 ⟹ XP_040150636

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,722,402 (-)	NCBI

RefSeq Acc Id:

XM_040294703 ⟹ XP_040150637

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,738,475 (-)	NCBI

RefSeq Acc Id:

XM_040294704 ⟹ XP_040150638

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,679,121 - 158,715,614 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338961	(Get FASTA)	NCBI Sequence Viewer
	XP_005338962	(Get FASTA)	NCBI Sequence Viewer
	XP_040150635	(Get FASTA)	NCBI Sequence Viewer
	XP_040150636	(Get FASTA)	NCBI Sequence Viewer
	XP_040150637	(Get FASTA)	NCBI Sequence Viewer
	XP_040150638	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002623.3
	ENSSTOP00000026894.1
	ENSSTOP00000031940.1
GenBank Protein	KAG3274980	(Get FASTA)	NCBI Sequence Viewer
	KAG3274981	(Get FASTA)	NCBI Sequence Viewer
	KAG3274982	(Get FASTA)	NCBI Sequence Viewer
	KAG3274983	(Get FASTA)	NCBI Sequence Viewer
	KAG3274984	(Get FASTA)	NCBI Sequence Viewer
	KAG3274985	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005338961 ⟸ XM_005338904
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DEF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQSQNAIFTSPTGEENLMSSNHRDSESITDVCSNEDLPEVELVNLLEEQLPQYKLRVDSLFLY ENQDWTQSPQHQHHASDALSPVLAEETFRYMILGTDRVEQMTKTYNDIDMVTHLLAERDRDLEL AARIGQALLKRNHVLSEQNEALEEQLGQAFDQVNQLQHELSKKDELLRIVSIASEESETDSSCS TPLRFNESFSLSQGLLQLDMLQEKLKELEEENMALRSKACHIKTETCTYEEKEQQLVNDCVKEL RETNAQMSKMTEELSGKSDELIRYQEEISSLLSQIVDLQHKLKEHVIEKEELRLHLQASKDAQR QLTMELHELQDRNMECLGMLHESQEEIKELRSRSGPAAHLYFSQSYGAFTGESLAAEIEGTMRK KLSLDEESLFKQKAQQKRVFDTVKVANDTRGRSVPFPALLPIPGSNRSSVIMTAKPFESGVQQT EDKTLPNPGSNSEEAPGSSQSVSQPEPSEDSDLATALHRLSLRRQNYLSEKQFFAEEWERKIRV LADQKEGVSGYDTPTESLASVCTDQSEITDLSSASCLRGFMPEKLQIVKPLEGSQTLHHWQQLA QPNLGTILDPRPGVITKGFTQLPKGAVYHISDLEEDEEEGITFQVQQPLHMEQKPAVSKPVTGI FLPPISSTVGPVAVSTSNPGKCLSCTNSTFTFTTCRILHPSDITQVTPSSGFPSLSCGSSGNSS SNTAMNSPAMSYRLSIGESITNRRDSTVTFSSTMSLAKLLQERGISAKVYHSPISENPLLTPLP KALAIPSTPPNSPSHSPCPSPLPFETRVHLSENFLASRPAETFLQEMYGLRPSRNPPDVGQLKM NLVDRLKRLGIARVVKTPASQENGKSQEVEISLQKPDSAVYLNSGSSLMGGLRRNQSLPVMLGS FGVPVCTSSPKMSILKED hide sequence

RefSeq Acc Id:	XP_005338962 ⟸ XM_005338905
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DEF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQSQNAIFTSPTGEENLMSSNHRDSESITDVCSNEDLPEVELVNLLEEQLPQYKLRVDSLFLY ENQDWTQSPQHQHHASDALSPVLAEETFRYMILGTDRVEQMTKTYNDIDMVTHLLAERDRDLEL AARIGQALLKRNHVLSEQNEALEEQLGQAFDQVNQLQHELSKKDELLRIVSIASEESETDSSCS TPLRFNESFSLSQGLLQLDMLQEKLKELEEENMALRSKACHIKTETCTYEEKEQQLVNDCVKEL RETNAQMSKMTEELSGKSDELIRYQEEISSLLSQIVDLQHKLKEHVIEKEELRLHLQASKDAQR QLTMELHELQDRNMECLGMLHESQEEIKELRSRSGPAAHLYFSQSYGAFTGESLAAEIEGTMRK KLSLDEESLFKQKAQQKRVFDTVKVANDTRGRSVPFPALLPIPGSNRSSVIMTAKPFESGVQQT EDKTLPNPGSNSEEAPGSSQSVSQPEPSEDSDLATALHRLSLRRQNYLSEKQFFAEEWERKIRV LADQKEGVSGYDTPTESLASVCTDQSEITDLSSASCLRGFMPEKLQIVKPLEGSQTLHHWQQLA QPNLGTILDPRPGVITKGFTQLPKGAVYHISDLEEDEEEGITFQVQQPLHMEQKPAVSKPVTGI FLPPISSTVGPVAVSTSNPGKCLSCTNSTFTFTTCRILHPSDITQVTPSSGFPSLSCGSSGNSS SNTAMNSPAMSYRLSIGESITNRRDSTVTFSSTMSLAKLLQERGISAKVYHSPISENPLLTPLP KALAIPSTPPNSPSHSPCPSPLPFETRVHLSENFLASRPAETFLQEMYGLRPSRNPPDVGQLKM NLVDRLKRLGIARVVKTPASQENGKSQEVEISLQKPDSAVYLNSGSSLMGGLRRNQSLPVMLGS FGVPVCTSSPKMSILKED hide sequence

RefSeq Acc Id:	XP_040150635 ⟸ XM_040294701
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040150637 ⟸ XM_040294703
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040150636 ⟸ XM_040294702
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040150638 ⟸ XM_040294704
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000026894 ⟸ ENSSTOT00000035352

RefSeq Acc Id:

ENSSTOP00000031940 ⟸ ENSSTOT00000041380

RefSeq Acc Id:

ENSSTOP00000002623 ⟸ ENSSTOT00000002933

Protein Domains

HAP1 N-terminal Trafficking kinesin-binding protein C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002930	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002933.3	UniProtKB/TrEMBL
	ENSSTOT00000035352.1	UniProtKB/TrEMBL
	ENSSTOT00000041380.1	UniProtKB/TrEMBL
InterPro	HAP1_N	UniProtKB/TrEMBL
	TRAK1/2_C	UniProtKB/TrEMBL
NCBI Gene	Trak2	ENTREZGENE
PANTHER	TRAFFICKING KINESIN-BINDING PROTEIN	UniProtKB/TrEMBL
	TRAFFICKING KINESIN-BINDING PROTEIN 2	UniProtKB/TrEMBL
Pfam	HAP1_N	UniProtKB/TrEMBL
	Milton	UniProtKB/TrEMBL
SMART	HAP1_N	UniProtKB/TrEMBL
	Milton	UniProtKB/TrEMBL
UniProt	A0A287D074_ICTTR	UniProtKB/TrEMBL
	A0A287DEF0	ENTREZGENE, UniProtKB/TrEMBL
	I3M1D8_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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