Ddx1 (DEAD-box helicase 1) - Rat Genome Database

Name: Ddx1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ddx1 (DEAD-box helicase 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Ddx1

Name:

DEAD-box helicase 1

RGD ID:

12682453

Description:

ENCODES a protein that exhibits ATP binding (inferred); chromatin binding (inferred); DNA binding (inferred); INVOLVED IN response to exogenous dsRNA (ortholog); response to virus (ortholog); ASSOCIATED WITH amenorrhea (ortholog); endometrial hyperplasia (ortholog); genetic disease (ortholog); FOUND IN cleavage body (inferred); cytoplasm (inferred); cytoplasmic stress granule (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATP-dependent RNA helicase DDX1; DEAD/H-box helicase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX1 (DEAD-box helicase 1)	NCBI	Ortholog
Mus musculus (house mouse):	Ddx1 (DEAD box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ddx1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ddx1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx1 (DEAD-box helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	55,920,933 - 55,954,651 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	14,884,442 - 14,918,823 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	14,884,532 - 14,918,621 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

endometrial hyperplasia (ISO)

genetic disease (ISO)

human immunodeficiency virus infectious disease (ISO)

optic atrophy (ISO)

schizophrenia (ISO)

substance-related disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA duplex unwinding (IEA)

double-strand break repair (IEA)

mRNA processing (IEA)

positive regulation of canonical NF-kappaB signal transduction (IEA)

positive regulation of myeloid dendritic cell cytokine production (IEA)

protein localization to cytoplasmic stress granule (IEA)

response to exogenous dsRNA (IEA,ISO)

response to virus (IEA,ISO)

rRNA processing (IEA)

tRNA processing (IEA)

tRNA splicing, via endonucleolytic cleavage and ligation (IEA)

Cellular Component

cleavage body (IEA)

cytoplasm (IEA)

cytoplasmic stress granule (IEA)

cytosol (IEA)

mitochondrion (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

ribonucleoprotein complex (IEA)

tRNA-splicing ligase complex (IEA)

Molecular Function

ATP binding (IEA)

chromatin binding (IEA)

DNA binding (IEA)

DNA/RNA helicase activity (IEA)

double-stranded RNA binding (IEA)

exonuclease activity (IEA)

nuclease activity (IEA)

nucleic acid binding (IEA)

poly(A) binding (IEA)

protein binding (ISO)

RNA binding (IEA)

RNA helicase activity (IEA)

transcription coregulator activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Ddx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	55,920,933 - 55,954,651 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	14,884,442 - 14,918,823 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	14,884,532 - 14,918,621 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	15,591,868 - 15,631,101 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	15,591,178 - 15,634,346 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	15,731,992 - 15,771,225 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	15,649,221 - 15,688,676 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	15,682,367 - 15,721,823	NCBI
Celera	2	15,649,490 - 15,688,945 (+)	NCBI		Celera
Cytogenetic Map	2	p24.3	NCBI
HuRef	2	15,583,004 - 15,622,496 (+)	NCBI		HuRef
CHM1_1	2	15,661,598 - 15,701,093 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	15,623,489 - 15,662,692 (+)	NCBI		T2T-CHM13v2.0

Ddx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	13,269,308 - 13,299,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	13,266,974 - 13,299,214 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	13,219,307 - 13,249,174 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	13,216,973 - 13,249,213 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	13,226,113 - 13,255,980 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	13,245,295 - 13,275,162 (-)	NCBI		MGSCv36	mm8
Celera	12	13,565,291 - 13,593,111 (-)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	6.4	NCBI

Ddx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	41,725,365 - 41,756,236 (-)	NCBI		GRCr8
mRatBN7.2	6	35,996,469 - 36,027,340 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	35,996,469 - 36,027,365 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	36,308,721 - 36,339,592 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	36,623,377 - 36,654,248 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	36,091,437 - 36,122,515 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	38,422,892 - 38,453,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	38,422,888 - 38,453,797 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	47,188,697 - 47,219,567 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	36,794,602 - 36,825,473 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	36,812,356 - 36,818,005 (-)	NCBI
Celera	6	35,359,044 - 35,389,916 (-)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI

Ddx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955487	9,085,918 - 9,119,979 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955487	9,085,950 - 9,117,599 (+)	NCBI	ChiLan1.0	ChiLan1.0

DDX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	110,890,477 - 110,930,113 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	110,894,450 - 110,959,990 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	15,582,499 - 15,619,751 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	15,716,044 - 15,753,482 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	15,716,044 - 15,753,623 (+)	Ensembl	panpan1.1		panPan2

DDX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	11,432,060 - 11,467,000 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	11,432,136 - 11,466,990 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	11,375,128 - 11,409,962 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	11,559,789 - 11,594,731 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	11,559,798 - 11,594,727 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	11,419,496 - 11,454,379 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	11,429,814 - 11,464,805 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	11,454,120 - 11,488,966 (+)	NCBI		UU_Cfam_GSD_1.0

DDX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	121,818,406 - 121,856,604 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	121,818,400 - 121,856,667 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	130,448,196 - 130,480,756 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	92,007,446 - 92,045,414 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	92,007,036 - 92,045,190 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	20,189,540 - 20,227,199 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ddx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624865	898,850 - 928,091 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624865	898,850 - 927,375 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003976 ⟹ ENSSTOP00000003564

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	14,885,150 - 14,918,823 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000039174 ⟹ ENSSTOP00000032249

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	14,884,442 - 14,918,681 (-)	Ensembl

RefSeq Acc Id:

XM_005322629 ⟹ XP_005322686

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	55,920,933 - 55,954,651 (+)	NCBI
SpeTri2.0	NW_004936493	14,884,532 - 14,918,621 (-)	NCBI

Sequence:

show sequence

ATTTTAAAATTACTTTTTATTTTCAGAGATGGGTGTTATGCCTGAGATTGCACAAGCTGTGGAA
GAGATGGATTGGCTCCTCCCAACTGATATCCAAGCTGAATCCATCCCATTGATCCTAGGAGGAG
GTGATGTACTTATGGCTGCAGAAACAGGAAGTGGAAAAACTGGTGCTTTCAGTATTCCAGTTAT
ACAGATAGTTTATGAAACTCTGAAAGACCAACAAGAAGGGAAAAAAGGAAAAACAACAATTAAA
ACTGGTGCTTCGGTGCTCAACAAATGGCAAATGAATCCATATGACAGAGGATCTGCTTTTGCAA
TTGGGTCAGATGGTCTTTGTTGTCAAAGTAGAGAAGTGAAGGAATGGCACGGATGCAGAGCTAC
TAAAGGATTAATGAAAGGGAAACATTACTATGAAGTCTCCTGTCATGACCAGGGGTTGTGCAGA
GTTGGGTGGTCTACCATGCAGGCCTCCCTAGATCTAGGTACAGACAAGTTTGGATTTGGCTTTG
GTGGAACAGGAAAGAAATCCCATAACAAACAGTTTGATAATTATGGAGAGGAATTCACTATGCA
TGACACCATTGGATGTTACCTAGATATAGATAAAGGACATGTCAAATTCTCCAAAAATGGGAAA
GATCTTGGTCTGGCATTTGAAGTACCACCACATATGAAAAACCAAGCCCTCTTTCCTGCTTGTG
TTTTGAAGAATGCTGAACTAAAATTTAACTTTGGTGAAGAAGAATTTAAGTTTCCACCAAAAGA
TGGTTTTGTTGCTCTTTCCAAGGCACCAGATAGTTACGTTGTCAAATCACAGCACACAGGTAAT
GCGCAGGTGACACAAACAAAGTTTCTCCCCAATGCTCCAAAAGCTCTCATCGTTGAACCCTCTC
GTGAATTAGCTGAACAAACTTTGAATAATGTCAAGCAGTTTAAGAAATATGTTGATAATCCTAA
ATTAAGGGAGCTTCTGATAATTGGAGGTGTTGCAGCACGGGATCAGCTCTCTGTTTTGGATAAT
GGGGTTGATATTGTTGTAGGCACCCCAGGAAGACTAGATGATTTGGTGTCAACTGGAAAGCTGA
ACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCTGATGGACTTCTTTCTCAAGGTTATTC
TGATTTTATAAATAGAATGCACAGTCAAATTCCTCAGATTACCTCAGATGGAAAAAGACTTCAG
GTGATTGTTTGCTCTGCTACTTTGCATTCTTTTGATGTAAAGAAACTCTCTGAGAAAATAATGC
ATTTTCCCACATGGGTTGATTTAAAAGGAGAAGATTCTGTTCCAGATACTGTACACCATGTTGT
TGTCCCAGTGAATCCCAAAACTGACAGACTCTGGGAAAGGCTAGGAAAAAACCACATTAGAACT
GATGATGTACATGCAAAAGATAATACAAGACCTGGTGCTAACAGTCCAGAGATGTGGTCTGAAG
CTATTAAAATCCTGAAGGGGGAGTATGCTGTCCGAGCAATCAAGGAACACAAGATGGATCAAGC
AATTATCTTCTGTAGAACCAAAATTGACTGTGATAATTTGGAGCAGTATTTTATGCAACAGGGA
GGAGGACCTGATAAAAAAGGACACCAGTTCTCATGTGTTTGTCTTCATGGTGATAGAAAGCCTC
ATGAGAGAAAGCAAAACCTGGAACGATTTAAGAAAGGAGACGTGAGATTCTTGATTTGCACAGA
TGTAGCTGCTAGAGGAATTGATATCCATGGTGTTCCTTATGTTATAAATGTCACCCTGCCTGAT
GAAAAGCAAAACTATGTACACCGAATTGGCAGAGTAGGCAGAGCTGAAAGGATGGGTCTGGCCA
TTTCCCTGGTGGCAACAGAAAAAGAAAAGGTTTGGTACCATGTATGTAGCAATCGTGGAAAAGG
GTGTTACAATACGAGACTCAAGGAAGATGGTGGCTGTACCATTTGGTACAATGAGATGCAGCTT
CTCTCTGAGATAGAAGAACACCTGAACTGCACCATTTCTCAGGTTGAGCCGGATATCAAGGTTC
CAGTGGATGAATTTGATGGAAAAGTTACCTATGGTCAAAAGAGGGCTGCTGGTGGTGGAAACTA
TAAAGGCCATGTGGATATTTTGGCACCTACTGTTCAAGAGTTGGCTGCCCTTGAAAAGGAGGCA
CAGACATCTTTTCTGCATCTTGGCTACCTTCCTAACCAGCTGTTCAGAACCTTCTGATTTTCAT
GTGTACTGAATAAGATTTGAATACTAAGTCAGTAGTCTTAAAACTCTAAAACAGTTGTACTGCT
TCCAAGTAGCAGTATATATAGTAACTTAAGCTATTAATGCTAACTCTTGCATGTCAAGAAACAT
TAGTCTTAGAAATTCTTCATAAAATGGCAACCTAATGACAATAAATTTGACCACTATATTTTCA
TGAAGGTTTGCGTCTTATTTTAAATTTATATTGATTTCTCCCCCCCCCTTTTAAAGTATGCTGC
AAGCTTATGCATTAAGTTTATGGATATGTGAATTTGGCCAAAGATCATATGAAACTACTAGCAG
ATGTCCTAAGAATAAGGTCTTTCACTGGGAGTGGTCCTGATGGATGATCTTCAGATGGTTAAGG
CTGTCTGGGTGCAAGTTCAGCGGGAGGAGAGTTGTGATGTGAAAGAAAATGGGGTGATACCAAG
GTGGAAGGAGGACAGCCCAGTTAGTTTGGAAACCTGGAGGATCCTGGGGGTTAGAAGAAGTTCC
GTGTCTGTGAAGATGTATCTGAAGGATTACCTTCCTTTTAAGAACCTTTTTTTCCAGATGATAT
GTACCCTGGAAAATAAAACTAATATGCTAACCCTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005322686	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003564.3
	ENSSTOP00000032249.1
GenBank Protein	KAG3267612	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005322686 ⟸ XM_005322629

- UniProtKB:

A0A287DFD0 (UniProtKB/TrEMBL), I3M3D3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD
QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHY
YEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI
DKGHVKFSKNGKDLGLAFEVPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP
DSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGG
VAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHSQ
IPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR
LWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID
CDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH
GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKED
GGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAP
TVQELAALEKEAQTSFLHLGYLPNQLFRTF

hide sequence

RefSeq Acc Id:

ENSSTOP00000032249 ⟸ ENSSTOT00000039174

RefSeq Acc Id:

ENSSTOP00000003564 ⟸ ENSSTOT00000003976

Protein Domains

B30.2/SPRY Helicase ATP-binding Helicase C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003977	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003976.3	UniProtKB/TrEMBL
	ENSSTOT00000039174.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	DEAD/DEAH_box_helicase_dom	UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
NCBI Gene	Ddx1	ENTREZGENE
PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	UniProtKB/TrEMBL
	ATP-DEPENDENT RNA HELICASE DDX1	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A287DFD0	ENTREZGENE, UniProtKB/TrEMBL
	I3M3D3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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