Slc15a5 (solute carrier family 15 member 5)

Gene: Slc15a5 (solute carrier family 15 member 5) Ictidomys tridecemlineatus

Analyze

Symbol:

Slc15a5

Name:

solute carrier family 15 member 5

RGD ID:

12680184

Description:

ENCODES a protein that exhibits symporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN peptide transport (inferred); protein transport (inferred); transmembrane transport (inferred); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	91,621,762 - 91,704,767 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	1,349,397 - 1,432,155 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	1,349,397 - 1,432,155 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

peptide transport (IEA)

protein transport (IEA)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

symporter activity (IEA)

transmembrane transporter activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Slc15a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	91,621,762 - 91,704,767 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	1,349,397 - 1,432,155 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	1,349,397 - 1,432,155 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC15A5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	16,188,485 - 16,277,685 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	16,188,485 - 16,277,685 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	16,341,419 - 16,430,619 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	16,233,869 - 16,321,886 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	21,486,383 - 21,574,381 (-)	NCBI		Celera
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	16,110,761 - 16,198,741 (-)	NCBI		HuRef
CHM1_1	12	16,307,411 - 16,395,372 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	16,065,864 - 16,155,028 (-)	NCBI		T2T-CHM13v2.0

Slc15a5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	137,960,584 - 138,056,914 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	137,960,584 - 138,056,914 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	137,983,586 - 138,079,916 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	137,983,586 - 138,079,916 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	137,932,111 - 138,028,437 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	137,947,786 - 138,037,394 (-)	NCBI		MGSCv36	mm8
Celera	6	141,048,720 - 141,143,799 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	67.96	NCBI

Slc15a5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	172,609,293 - 172,702,893 (-)	NCBI		GRCr8
mRatBN7.2	4	170,878,021 - 170,971,620 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	170,878,021 - 170,971,620 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	177,173,067 - 177,266,669 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	172,957,259 - 173,050,845 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	171,577,779 - 171,671,367 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	171,970,620 - 172,063,391 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	171,970,620 - 172,063,391 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	236,224,617 - 236,317,092 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	175,098,364 - 175,191,369 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	159,452,735 - 159,545,830 (-)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

Slc15a5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	12,832,193 - 12,924,836 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	12,832,193 - 12,924,836 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC15A5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	21,635,901 - 21,723,724 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	21,632,662 - 21,720,485 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	16,190,038 - 16,277,911 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	16,586,139 - 16,674,013 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SLC15A5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	30,452,346 - 30,534,393 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	30,414,299 - 30,534,100 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	15,913,616 - 15,995,287 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	30,772,519 - 30,854,218 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	30,772,513 - 30,853,930 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	30,719,403 - 30,744,564 (+)	NCBI		UMICH_Zoey_3.1
UMICH_Zoey_3.1	27	30,623,335 - 30,690,490 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	30,619,522 - 30,701,397 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	15,633,835 - 15,715,524 (-)	NCBI		UU_Cfam_GSD_1.0

SLC15A5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	56,345,871 - 56,429,368 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	56,345,871 - 56,430,645 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	59,635,863 - 59,718,270 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC15A5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	16,103,843 - 16,198,937 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	16,106,887 - 16,197,599 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	19,095,894 - 19,193,747 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc15a5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	21,798,306 - 21,887,888 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	21,798,306 - 21,887,928 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005331916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000008465 ⟹ ENSSTOP00000007586

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936587	1,349,397 - 1,432,155 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036937 ⟹ ENSSTOP00000031316

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936587	1,378,366 - 1,384,936 (+)	Ensembl

RefSeq Acc Id:

XM_005331916 ⟹ XP_005331973

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	91,621,762 - 91,704,767 (+)	NCBI
SpeTri2.0	NW_004936587	1,349,397 - 1,432,155 (+)	NCBI

Sequence:

show sequence

ATGTCTGTTACACACTTTACAATAACAGATGAGGAAGTGGCCTTACATCTCAGCACTGAGAGGG
AGAAAACTGTAAGACATATCGATTATTTTTCATCACCAAACTCTGTGAAAAAAATTCAGGTTGG
AATCTGCTTGCTTCTGGTGGAGCTGTGTGAGAGATTCACCTTCTTTGAAGTCGTCTGCAACATG
ATCCCCTTTTGCACCGTCAAACTGGGCTACCACAATTACCAGGCAGCCATTTTGAACTTGTGTT
TTATTGGAACTTCAATACTTACTCCTGTGCTTGTGGGGTGGCTGGCTGACATCTTCCTAGGAAG
AAATAAACTGGTGTATATCTGCTTATTTCTACATTTCCTAGGCACTGCCTTGTTATCTGGGGTT
GCTTTCCCCTCAGAAGATTCCTACATAGGCTCTTACCATGTGATTAACCACATACCCACCAAGG
AGCAGAACAGGCTGTTTCACGTAGCACTGCTAGCCATCTCCCTTGGCACCGGAGGAATCAGAGC
CATTGTCTGTCCACAGGCTGCTTATGGTCTTCAGGAACACAAATCAAAGAAACGAACATCTCTT
TTTAACTGCTGCGAGACCTTTAATGAGATGTGTCATTGCATCCGTACCACCCAACGCTTCCCCG
CGATCATGTTAAGCAGCCTAGACTGGAAGTCTCAGGCACTGAAGGCACCACTTCCGAGTAAGGC
TGCCAAATGTTGCTCCCTCCTGGCAACATTTGGGGTGTTTGTTAATGCACTGAAAACATGCTGC
CTGCAGTATTTTCATCTTGGTAGAGATGTGACAGACTGGTTAGACCATGCCAAGGAAAAAAATG
GCGGCCACTACAGTGAGCTCCTCGTGGAAGACACAAAACCTTTCTTCGCCCTTCTCCCTCTCTT
CATTTTTCAACTAATATACAGAGTGTGCATTATGCAGATTCCTTCGGCATATTATCTGCAGACC
ATGAATTCCAACCTGAATCTGGATGGATTTCTTCTGCCAATTGCAGTAATGAATGCCATCAGCA
GCCTACCATTATTAGTTCTGGCTCCTTTTATGGAGTACTTCAGCACCTGCCTGTTTCCCTCTAA
GAGAGATGGACCATTTCTGTCAGCATGCATTATTGCTGGAAATCTTTCTGCTGCGTTGTCTGTG
ATGGTAGCTGGCTTCTCTGAAATACGCAGAAAACACTTTCCACTGCTGGAACAGCCTCTTTTAG
GCCAAGTTCTGCCTGTCTCCTCCATGCCCTGTTTCCACCTGGTTCTTCAGTACGTTTTACTTGG
AGTGGCTGAAACTCTGGTAAACCCTGCCCTCTCCATAATAGCACACAGATTTGTTCCAAGAACC
GTCCGAGGAACTTCTATGAATTTTTTGACACTGTTCAATGGATTTGGTTGTTTCACAGGGGCAC
TGCTGGTGGAGTTGGTTTATCTCATCTCAGAAGGCAATTGGTTTCCAAACACATTAAACAAAGG
CAATTTAGAAAGCTTCTTCTTCTTGCTGGCATCATTAACATTGTTGAACGTCCTGGGATTCTGG
AGTGTTTCGCAAAGATATTGTAATCTAAATCATTTTAATGCCCAGAACATCAGTGGAAGTAATC
TTGAAGAAACACTTCTCCTCCATGAAAAGTCTCTGAAATTTTATGGCAGCACACAGGAAATTTC
TTCAAGTATTGATCTTTGGGAGACAGCCCTATGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005331973	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000007586.3
	ENSSTOP00000031316.1
GenBank Protein	KAG3292310	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005331973 ⟸ XM_005331916

- UniProtKB:

I3MBN9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVTHFTITDEEVALHLSTEREKTVRHIDYFSSPNSVKKIQVGICLLLVELCERFTFFEVVCNM
IPFCTVKLGYHNYQAAILNLCFIGTSILTPVLVGWLADIFLGRNKLVYICLFLHFLGTALLSGV
AFPSEDSYIGSYHVINHIPTKEQNRLFHVALLAISLGTGGIRAIVCPQAAYGLQEHKSKKRTSL
FNCCETFNEMCHCIRTTQRFPAIMLSSLDWKSQALKAPLPSKAAKCCSLLATFGVFVNALKTCC
LQYFHLGRDVTDWLDHAKEKNGGHYSELLVEDTKPFFALLPLFIFQLIYRVCIMQIPSAYYLQT
MNSNLNLDGFLLPIAVMNAISSLPLLVLAPFMEYFSTCLFPSKRDGPFLSACIIAGNLSAALSV
MVAGFSEIRRKHFPLLEQPLLGQVLPVSSMPCFHLVLQYVLLGVAETLVNPALSIIAHRFVPRT
VRGTSMNFLTLFNGFGCFTGALLVELVYLISEGNWFPNTLNKGNLESFFFLLASLTLLNVLGFW
SVSQRYCNLNHFNAQNISGSNLEETLLLHEKSLKFYGSTQEISSSIDLWETAL

hide sequence

RefSeq Acc Id:

ENSSTOP00000031316 ⟸ ENSSTOT00000036937

RefSeq Acc Id:

ENSSTOP00000007586 ⟸ ENSSTOT00000008465

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000008472	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000008465.3	UniProtKB/TrEMBL
	ENSSTOT00000036937.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	MFS_trans_sf	UniProtKB/TrEMBL
	POT_fam	UniProtKB/TrEMBL
NCBI Gene	Slc15a5	ENTREZGENE
PANTHER	PTHR11654	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 15 MEMBER 5	UniProtKB/TrEMBL
Pfam	PTR2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/TrEMBL
UniProt	A0A287DCU7_ICTTR	UniProtKB/TrEMBL
	I3MBN9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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