Timd4 (T cell immunoglobulin and mucin domain containing 4)

Gene: Timd4 (T cell immunoglobulin and mucin domain containing 4) Ictidomys tridecemlineatus

Analyze

Symbol:

Timd4

Name:

T cell immunoglobulin and mucin domain containing 4

RGD ID:

12677986

Description:

ENCODES a protein that exhibits phosphatidylserine binding (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); lymphoproliferative syndrome 1 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-cell immunoglobulin and mucin domain containing 4; T-cell immunoglobulin and mucin domain containing 4, transcript variant X1; T-cell immunoglobulin and mucin domain containing 4, transcript variant X2; T-cell immunoglobulin and mucin domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	107,657,579 - 107,691,432 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	6,106,991 - 6,141,027 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hepatocellular carcinoma (ISO)

lymphoproliferative syndrome 1 (ISO)

ovarian cyst (ISO)

systemic lupus erythematosus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic cell clearance (ISO)

Molecular Function

phosphatidylserine binding (ISO)

protein binding (ISO)

References

Genomics

Comparative Map Data

Timd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	107,657,579 - 107,691,432 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	6,106,991 - 6,141,027 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TIMD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	156,919,292 - 156,963,226 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	156,919,292 - 156,963,226 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	156,346,303 - 156,390,237 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	156,278,948 - 156,322,844 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	156,278,948 - 156,322,844	NCBI
Celera	5	152,372,011 - 152,415,965 (-)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	151,439,934 - 151,483,898 (-)	NCBI		HuRef
CHM1_1	5	155,778,728 - 155,822,695 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	157,438,332 - 157,482,246 (-)	NCBI		T2T-CHM13v2.0

Timd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	46,701,613 - 46,735,160 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	46,701,627 - 46,735,159 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	46,810,786 - 46,844,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	46,810,800 - 46,844,332 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	46,624,301 - 46,657,835 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	46,654,240 - 46,687,385 (+)	NCBI		MGSCv36	mm8
Celera	11	51,386,317 - 51,427,725 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	28.09	NCBI

Timd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	31,686,994 - 31,723,095 (+)	NCBI		GRCr8
mRatBN7.2	10	31,185,751 - 31,221,843 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	31,185,731 - 31,220,966 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	31,880,822 - 31,917,215 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	31,880,918 - 31,915,247 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	31,702,238 - 31,738,453 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	31,892,078 - 31,927,581 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	30,630,506 - 30,666,574 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

Timd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	10,969,413 - 10,998,042 (-)	NCBI	ChiLan1.0	ChiLan1.0

TIMD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	152,116,349 - 152,160,098 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	150,255,838 - 150,299,645 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	152,321,962 - 152,365,717 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	158,305,666 - 158,340,856 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	158,305,721 - 158,349,336 (-)	Ensembl	panpan1.1		panPan2

TIMD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	53,070,950 - 53,133,617 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	52,991,626 - 53,031,531 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	53,536,074 - 53,576,110 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	4	53,362,017 - 53,401,841 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	53,469,257 - 53,509,284 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	53,986,239 - 54,026,173 (+)	NCBI		UU_Cfam_GSD_1.0

TIMD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	66,253,604 - 66,292,961 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	66,253,572 - 66,292,963 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	72,127,780 - 72,143,503 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TIMD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	59,320,120 - 59,381,965 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	59,319,749 - 59,355,100 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	18,267,835 - 18,309,378 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Timd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	32,381,189 - 32,482,874 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021726499 ⟹ XP_021582174

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	107,657,579 - 107,691,432 (+)	NCBI
SpeTri2.0	NW_004936515	6,106,991 - 6,141,025 (+)	NCBI

Sequence:

show sequence

TCAAAATGTCCCAAGGGCCTCTCCTTCTCTGGCTGGTGATGCAGTTCGGGTGGATTTATCTGGT
ACCAACTGCATCAGAGGATACCGTGACATCGTTTTTGGGTCAGTCAGTGACTTTGCCCTGTTTA
TATTTGTCCTGGTCTCAGGACAGAAACAGCATGTGCTGGGGCAAAGGCCACTGTCCCAATTCTA
AATGCAGCCAGGCGCTTCTCCACACGGACGGATCTAGAGTGCTCTCTAGTGCGTCTGAAAAATA
TAGGCTTCTGGGGAACATCCAGAGAGGTCATGTTTCCTTGACCATCTCCAACACCAATGAAGAG
GACAGTGGGGTGTACTGCTGCCGCATAGAGGTGCCAGGCTGGTTCAATGACGTGAAGAAGCATG
TTCACTTGGTGCTGAGTAGAGCCCCAACAACCACCAGGAAAATGACCACCTTGCCCCCAACCAC
CACCCCTCACATGACGACAACCACAGCGGCGGTGCCTCCAACAACAGCCGTGACGACCCCTGAC
CTCACAACCAGAGCACCGCTTCAGACGATGGCCACCTCGGGCTTCACAACGTCCACCACGTGCC
CCCTGACAACAATGACCTCCCTCTCGGAGGTGGCCACGAGTCTTCTGACCACCGGGCCTTCTAC
GGAAGGGCCTGACCTCACCACAGAATCAGCAACTTTTCGTGGTTCCAGCACGTCTTGGAGAAGC
ATCAAGGCAACTTCTGCACACACTGCCTCGTCTATGGCCAAAGGGTCTGAAACTCGGGTTCTTA
GGACTACATCCCAGGGAACACAGAAAAAGAGTGACTCAGGGGAAACTGGTGATTCCGTGACTCC
TCTTCAACCAGCATCGGAGATGACAAGTTCCACGCAAAGTAAATCAAAAGAGAACCACGAGACC
AACCTGGTGGTAATGGTCGCCTCCTGCGTGGGGTTCGTGCTGTTGGTGTTGGTGGCTACGTTTC
TCCTGCGAGGGAAAGTCACGAAAACCAGTTGTTTGCAGAAACACAAGAGATTAGACAAACTTGG
AGAAAGCAAAAATGCTCTCAATGACATGCATCATGGACAGGACGATGAAGATGGGCTTTTCACT
CTCTAACTTGCTACTTTTTCTTAGGATTGAGCAAGGCCTTGATGCTTGAAATTTCCATTTAAGT
CTTGTGGTGTTATAAATTTCGTTTTTTTTTTAAATGTTTCGACTATTGTGTTGATGTTATGGAT
TTGGTTTAGTTTTAATTTCACATGTGAGAGGTCTTTGGGAGACCACATCTTCTCTGCCTCGTGC
TTTAACCATCTCTGTAGTGTCACTGATCAGTGATCTTCTATATGATACCTGGGTAACCTCATCA
CCATGCCATGGCAGGAGTCCAGCCAACCTGAGGGCTGCTCTGAGATTAAGAAATATTTGAAACA
AAGTTCGTCTCTGATGGCATCT

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Protein Sequences


Protein RefSeqs	XP_021582174	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3265405	(Get FASTA)	NCBI Sequence Viewer
	KAG3265406	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021582174 ⟸ XM_021726499

- Sequence:

show sequence

MSQGPLLLWLVMQFGWIYLVPTASEDTVTSFLGQSVTLPCLYLSWSQDRNSMCWGKGHCPNSKC
SQALLHTDGSRVLSSASEKYRLLGNIQRGHVSLTISNTNEEDSGVYCCRIEVPGWFNDVKKHVH
LVLSRAPTTTRKMTTLPPTTTPHMTTTTAAVPPTTAVTTPDLTTRAPLQTMATSGFTTSTTCPL
TTMTSLSEVATSLLTTGPSTEGPDLTTESATFRGSSTSWRSIKATSAHTASSMAKGSETRVLRT
TSQGTQKKSDSGETGDSVTPLQPASEMTSSTQSKSKENHETNLVVMVASCVGFVLLVLVATFLL
RGKVTKTSCLQKHKRLDKLGESKNALNDMHHGQDDEDGLFTL

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Timd4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-12-19	Timd4	T cell immunoglobulin and mucin domain containing 4		T-cell immunoglobulin and mucin domain containing 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI